Ecosyste.ms: Issues

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GitHub / ysig/GraKeL issues and pull requests

#119 - Node with No Outgoing Edge in WL Kernel

Issue - State: open - Opened by JohnLyu2 about 1 month ago - 1 comment

#118 - Nodes with multiple attributes

Issue - State: open - Opened by caspervanengelenburg 2 months ago - 1 comment

#116 - Fixed numpy import error on numpy > 2.0.0

Pull Request - State: open - Opened by edisnord 3 months ago - 1 comment

#115 - Can't import GraKeL due to a numpy import error

Issue - State: open - Opened by edisnord 4 months ago

#115 - Can't import GraKeL due to a numpy import error

Issue - State: open - Opened by edisnord 4 months ago - 1 comment

#114 - explicitly define dtype for sparse matrix

Pull Request - State: closed - Opened by klausweinbauer 4 months ago - 1 comment

#112 - make RandomWalk kernel compatible with SciPy version >= 1.12.0

Pull Request - State: closed - Opened by klausweinbauer 4 months ago - 1 comment

#111 - RandomWalk kernel incompatible with SciPy version >=1.14.0

Issue - State: closed - Opened by klausweinbauer 4 months ago - 2 comments

#110 - Bump actions/download-artifact from 2 to 4.1.7 in /.github/workflows

Pull Request - State: open - Opened by dependabot[bot] 5 months ago
Labels: dependencies

#109 - Edge labels not working for custom dataset

Issue - State: open - Opened by j-adamczyk 9 months ago - 1 comment

#108 - updated links in fetch_dataset and fixed SSL purpose

Pull Request - State: closed - Opened by theoliver7 9 months ago - 2 comments

#107 - Issue #105 : avoid ssl error in fetch_dataset

Pull Request - State: closed - Opened by pwelke 12 months ago - 2 comments

#106 - Graph hopper kernel unable to transfom the data

Issue - State: open - Opened by SantaAnkit 12 months ago - 1 comment

#105 - fetch_dataset not working

Issue - State: closed - Opened by jbannon about 1 year ago - 1 comment

#104 - fix doc for edge histogram

Pull Request - State: closed - Opened by KarahanS about 1 year ago

#103 - The Weisfeiler-Lehman Edge Kernel

Issue - State: closed - Opened by KarahanS about 1 year ago

#102 - Print <class 'grakel.graph.Graph'>

Issue - State: open - Opened by AmirDavoodi about 1 year ago - 1 comment

#101 - build: Add doc dependancies

Pull Request - State: open - Opened by eddiebergman about 1 year ago - 1 comment

#100 - Origin/0.1a10

Pull Request - State: closed - Opened by ysig over 1 year ago - 2 comments

#99 - Can't install on Windows 10, keep getting same error

Issue - State: closed - Opened by preslaff over 1 year ago - 2 comments

#98 - Add BibTeX syntax highlighting to `README.md`

Pull Request - State: closed - Opened by Benjamin-Loison over 1 year ago

#97 - Error when using EdgeHistogram

Issue - State: closed - Opened by kkkkk001 over 1 year ago - 1 comment
Labels: bug

#96 - RWK matrix returns by fit_transform by RandomWalkLabeled() contains only 1.0

Issue - State: closed - Opened by KatrinaLiang over 1 year ago - 7 comments
Labels: bug

#94 - NeighborhoodSubgraphPairwiseDistance kernel returns diagonal elements less than 1

Issue - State: closed - Opened by altsoph over 1 year ago - 5 comments
Labels: bug

#93 - fix when graph grakel is initialized with attributes

Pull Request - State: open - Opened by YasCoMa over 1 year ago - 1 comment

#92 - Graphlet kernel

Issue - State: closed - Opened by congrendai over 1 year ago - 1 comment
Labels: question

#91 - Explicit graph kernels

Issue - State: closed - Opened by congrendai over 1 year ago - 2 comments

#90 - Graph.clone() or Graph.copy()

Issue - State: closed - Opened by pwelke over 1 year ago - 3 comments

#89 - Generating graphs from dense/numpy matrices

Issue - State: open - Opened by VHolstein almost 2 years ago - 1 comment
Labels: enhancement, good first issue

#88 - Difference between ShortestPath and ShortestPathAttr

Issue - State: closed - Opened by kaidi-g almost 2 years ago - 2 comments

#87 - modified random walk kernel giving all 1 scores for normalize=true

Issue - State: closed - Opened by siantist about 2 years ago - 1 comment

#86 - MultiDiGraph: graph_from_networkx() ValueError

Issue - State: closed - Opened by MichZipp about 2 years ago - 1 comment
Labels: question

#85 - Remove win32 builds altogether

Pull Request - State: closed - Opened by eddiebergman over 2 years ago - 1 comment

#84 - I don't know how to use my own data for input

Issue - State: closed - Opened by JXn-XMU over 2 years ago - 5 comments

#83 - Update CI to allow newer Python versions

Pull Request - State: closed - Opened by eddiebergman over 2 years ago - 22 comments
Labels: enhancement

#82 - Add newer python versions to builds

Pull Request - State: closed - Opened by eddiebergman over 2 years ago - 3 comments

#81 - NaN error when using Random walk kernel on certain datasets

Issue - State: closed - Opened by amanuelanteneh over 2 years ago - 3 comments

#80 - Fingerprint dataset not accessible using fetch_dataset function

Issue - State: closed - Opened by amanuelanteneh over 2 years ago - 13 comments

#79 - Can we obtain vector representation of the graphs?

Issue - State: closed - Opened by Kangfei over 2 years ago - 1 comment

#78 - Release wheels for Python 3.8+

Issue - State: closed - Opened by eddiebergman over 2 years ago - 3 comments

#77 - How to use the edge weight information of a graph？

Issue - State: closed - Opened by happysnzy over 2 years ago - 2 comments

#76 - use of ‘WeisfeilerLehman’

Issue - State: closed - Opened by happysnzy over 2 years ago - 1 comment

#75 - Missing args in kernel.fit_transform()

Issue - State: closed - Opened by cshjin almost 3 years ago - 7 comments
Labels: enhancement, good first issue

#74 - add documentation of C_grid parameter

Pull Request - State: closed - Opened by pwelke almost 3 years ago

#73 - Can I split train and test data manually?

Issue - State: closed - Opened by BlockChanZJ about 3 years ago - 4 comments

#72 - SubgraphMatching can not use normalize=True

Issue - State: closed - Opened by anonymous-author-here about 3 years ago - 1 comment

#71 - initialization of self.mu_ in random_walk.py

Issue - State: closed - Opened by JuliusSchwartz over 3 years ago - 2 comments
Labels: bug, question

#70 - The newest document is missing

Issue - State: closed - Opened by onlyacat over 3 years ago - 2 comments

#69 - Tutorial Fix

Pull Request - State: closed - Opened by aja114 over 3 years ago

#68 - Is there a best practice when computations are done in a cluster?

Issue - State: closed - Opened by ragnarlevi over 3 years ago - 1 comment

#67 - graphletsampling kernel Runtime Warning: invalid value encountered in true_divide

Issue - State: closed - Opened by phillopski almost 4 years ago - 3 comments

#65 - Is there a graph similarity algorithm that considers edge attributes?

Issue - State: closed - Opened by inksong almost 4 years ago - 2 comments

#64 - How to get mediate feature of graphs

Issue - State: closed - Opened by LittleWhite-Hai almost 4 years ago - 1 comment

#63 - GraphHopper: data type must provide an itemsize

Issue - State: closed - Opened by shelusb almost 4 years ago - 3 comments

#62 - Which algorithm can be used when both node and edge are labeled?

Issue - State: closed - Opened by tiedaoxiaotubie almost 4 years ago - 9 comments

#61 - TypeError with Submatching kernel

Issue - State: closed - Opened by funan-jhc-lee almost 4 years ago - 2 comments

#60 - pynauty

Issue - State: closed - Opened by pdobsan almost 4 years ago - 1 comment

#59 - calculate graph similarity by using GraKel

Issue - State: closed - Opened by tiedaoxiaotubie almost 4 years ago - 7 comments

#57 - Division by zero error when using Propagation kernel

Issue - State: closed - Opened by amirabbasasadi about 4 years ago - 2 comments

#56 - How to get the extracted kernel dependent features of WL kernel?

Issue - State: closed - Opened by nbl97 about 4 years ago - 1 comment

#55 - Documentation returns Error 404

Issue - State: closed - Opened by JosuaStadelmaier about 4 years ago - 3 comments

#54 - Include LICENSE in pip package

Pull Request - State: closed - Opened by jan-janssen about 4 years ago

#53 - Fix #52 example optimizing_hyperparameters

Pull Request - State: closed - Opened by moan0s about 4 years ago

#52 - Example optimizing_hyperparameters unable to run

Issue - State: closed - Opened by moan0s about 4 years ago - 1 comment

#51 - How to get the matching graph?

Issue - State: closed - Opened by wjd92 about 4 years ago - 1 comment

#49 - 0.1a8

Pull Request - State: closed - Opened by ysig about 4 years ago

#48 - Changed import of Bunch

Pull Request - State: closed - Opened by xtomasch over 4 years ago

#47 - Changed import of Bunch

Pull Request - State: closed - Opened by xtomasch over 4 years ago - 1 comment

#46 - implementation of EMD Kernel

Issue - State: closed - Opened by JhuoW over 4 years ago - 1 comment

#45 - GraphHopper error

Issue - State: closed - Opened by paulamartingonzalez over 4 years ago - 1 comment

#44 - joblib raised Deprecation Error

Issue - State: closed - Opened by EchoShoot over 4 years ago - 5 comments

#43 - Unable to transform same graph twice wth ShortestPath kernel

Issue - State: closed - Opened by kevinlee2198 over 4 years ago - 1 comment

#42 - problem with sklearn's train_test_split after networkx import

Issue - State: closed - Opened by SylvainTakerkart almost 5 years ago - 5 comments

#41 - Dealing with multiple sets of continuous attributes?

Issue - State: closed - Opened by SylvainTakerkart almost 5 years ago - 2 comments

#40 - Error when fitting graph kernels

Issue - State: closed - Opened by paulamartingonzalez almost 5 years ago - 7 comments

#39 - MultiscaleLaplacianFast parse_input doesn't accept length one input

Issue - State: closed - Opened by YemanBrhane almost 5 years ago - 1 comment

#37 - Kernels suitable for continuous adjacency matrices?

Issue - State: closed - Opened by marsuplink almost 5 years ago - 10 comments

#36 - Issue with fetch_dataset and MultiscaleLaplacian kernel

Issue - State: closed - Opened by fede-vaccaro almost 5 years ago - 1 comment

#35 - how to plot a Grakel graph object

Issue - State: closed - Opened by 040840308 almost 5 years ago - 1 comment

#34 - NotImplementedError: Pairwise operation is not implemented!

Issue - State: closed - Opened by kgoyal98 almost 5 years ago - 3 comments

#33 - Kernel for rdf graphs

Issue - State: closed - Opened by sbhttchryy almost 5 years ago - 1 comment

#32 - 0.1a7

Pull Request - State: closed - Opened by ysig almost 5 years ago

#31 - Minor typo in RW kernel

Pull Request - State: closed - Opened by Alessi0X almost 5 years ago

#30 - Faster "calculation" stage for Floyd-Warshall

Pull Request - State: closed - Opened by Alessi0X almost 5 years ago

#29 - Vectorised initialisation for Floyd-Warshall

Pull Request - State: closed - Opened by Alessi0X almost 5 years ago - 1 comment

#28 - Vectorised initialisation for Floyd-Warshall

Pull Request - State: closed - Opened by Alessi0X almost 5 years ago

#27 - Possible improvement for initialisation of Floyd-Warshall?

Issue - State: closed - Opened by Alessi0X almost 5 years ago - 2 comments

#26 - Using Graph Kernels for regression

Issue - State: closed - Opened by sbhttchryy almost 5 years ago - 1 comment

#25 - Graphlet Sampling kernel errors when sampling is 'None'

Issue - State: closed - Opened by Alessi0X almost 5 years ago - 8 comments

#24 - full documentation link down

Issue - State: closed - Opened by zsxing99 about 5 years ago - 2 comments

#23 - Including node attributes in GraKel

Issue - State: closed - Opened by sbhttchryy about 5 years ago - 2 comments