yoavram/curveball issues and pull requests

#168 - xlrd version

Issue - State: open - Opened by nahanoo 7 months ago - 1 comment

#167 - ZeroDivisionError: float division by zero

Issue - State: open - Opened by wayne-wpl 11 months ago

#166 - TypeError: Could not convert G12G12G12G12G12G12G12G12H12H12H12H12H12H12H12H12 to numeric

Issue - State: open - Opened by wayne-wpl over 1 year ago - 2 comments

#165 - Bump certifi from 2016.8.31 to 2022.12.7

Pull Request - State: open - Opened by dependabot[bot] about 2 years ago - 1 comment
Labels: dependencies

#164 - Bump lxml from 4.7.1 to 4.9.1

Pull Request - State: open - Opened by dependabot[bot] over 2 years ago - 1 comment
Labels: dependencies

#163 - Bump numpy from 1.11.1 to 1.22.0

Pull Request - State: closed - Opened by dependabot[bot] over 2 years ago - 1 comment
Labels: dependencies

#162 - Bump numpy from 1.11.1 to 1.21.0

Pull Request - State: closed - Opened by dependabot[bot] over 2 years ago - 2 comments
Labels: dependencies

#161 - Bump lxml from 3.6.4 to 4.6.5

Pull Request - State: closed - Opened by dependabot[bot] about 3 years ago - 2 comments
Labels: dependencies

#160 - Import example data error

Issue - State: open - Opened by BinhongLiu about 3 years ago - 15 comments

#159 - BioTek data

Issue - State: closed - Opened by Edison2021 over 3 years ago

#158 - Update handling of xlsx

Issue - State: open - Opened by yoavram over 3 years ago - 1 comment

#157 - Bump lxml from 3.6.4 to 4.6.3

Pull Request - State: closed - Opened by dependabot[bot] almost 4 years ago - 1 comment
Labels: dependencies

#156 - Bump lxml from 3.6.4 to 4.6.2

Pull Request - State: closed - Opened by dependabot[bot] about 4 years ago - 1 comment
Labels: dependencies

#155 - Fixed as_matrix bug

Pull Request - State: open - Opened by chofski almost 5 years ago - 4 comments

#154 - as_matrix depreciated in pandas

Issue - State: closed - Opened by chofski almost 5 years ago - 2 comments

#153 - error with strain and cycle number

Issue - State: closed - Opened by pavlo888 almost 5 years ago - 1 comment

#152 - Use with Biotek Reader

Issue - State: open - Opened by behrimg about 5 years ago
Labels: IO

#151 - Add workaround for pre-cleaned data

Pull Request - State: open - Opened by nickp60 over 5 years ago - 3 comments

#150 - Support for cleaned data?

Issue - State: open - Opened by nickp60 over 5 years ago - 1 comment
Labels: help wanted, CLI, IO

#149 - Add support for Spectramax

Issue - State: open - Opened by yoavram over 5 years ago
Labels: enhancement, CLI, IO

#148 - Resource files not there after pip install

Issue - State: closed - Opened by yoavram over 5 years ago - 2 comments
Labels: bug, packaging

#147 - Deprecation warning

Issue - State: open - Opened by yoavram over 5 years ago - 1 comment
Labels: refactoring

#146 - Write competition coefficients to output

Issue - State: open - Opened by yoavram over 5 years ago - 1 comment
Labels: CLI

#145 - Update CHANGELOG.md

Issue - State: closed - Opened by yoavram over 5 years ago

#144 - Fix deployment to PyPI

Issue - State: closed - Opened by yoavram over 5 years ago - 1 comment

#143 - DOCS: recommend installing Python 3

Issue - State: closed - Opened by yoavram almost 8 years ago - 1 comment
Labels: docs

#142 - v0.2.9

Pull Request - State: closed - Opened by yoavram almost 8 years ago

#141 - Deprecated warning

Issue - State: open - Opened by yoavram almost 8 years ago - 1 comment
Labels: refactoring

#140 - Analytics

Issue - State: open - Opened by yoavram about 8 years ago

#139 - Bug fixes

Pull Request - State: closed - Opened by yoavram over 8 years ago - 1 comment
Labels: bug, CLI, CI

#138 - Bug fix

Pull Request - State: closed - Opened by yoavram over 8 years ago - 1 comment

#137 - Development of v.0.2.6

Pull Request - State: closed - Opened by yoavram over 8 years ago

#136 - BUG: KeyError in find_max_growth_ci

Issue - State: closed - Opened by yoavram over 8 years ago

#135 - IndexError in find_lag_ci when there is no lag

Issue - State: open - Opened by yoavram over 8 years ago
Labels: bug

#134 - Confidence interval bugs and K

Pull Request - State: closed - Opened by yoavram over 8 years ago - 1 comment
Labels: bug, enhancement

#133 - Consistent default for use_weights

Issue - State: open - Opened by yoavram over 8 years ago
Labels: refactoring

#132 - Faster growth function

Issue - State: open - Opened by yoavram over 8 years ago
Labels: enhancement, refactoring

#131 - Confidence interval for K

Issue - State: closed - Opened by yoavram over 8 years ago - 1 comment

#130 - update dependencies in docs

Issue - State: closed - Opened by yoavram over 8 years ago
Labels: docs

#129 - Parallelization

Issue - State: open - Opened by yoavram over 8 years ago

#128 - Major update for version 0.2.4

Pull Request - State: closed - Opened by yoavram over 8 years ago - 1 comment

#127 - Remove --unshallow from .travis.yml

Issue - State: open - Opened by yoavram over 8 years ago
Labels: CI

#126 - FutureWarning: sort(columns=....) is deprecated, use sort_values(by=.....)

Issue - State: open - Opened by yoavram almost 9 years ago
Labels: refactoring, IO

#125 - Change find_max_growth

Issue - State: open - Opened by yoavram almost 9 years ago
Labels: question

#124 - Add Python 3.5 support to docs

Pull Request - State: closed - Opened by yoavram almost 9 years ago - 1 comment
Labels: docs

#123 - Remove divshot file

Issue - State: closed - Opened by yoavram almost 9 years ago - 1 comment

#122 - Test and build for Python 3.5

Pull Request - State: closed - Opened by yoavram almost 9 years ago - 1 comment
Labels: CI, packaging

#121 - Create installers that already bundle Python

Issue - State: closed - Opened by yoavram about 9 years ago - 1 comment
Labels: packaging

#120 - Migrate docs hosting to Netlify

Pull Request - State: closed - Opened by yoavram about 9 years ago - 1 comment
Labels: docs, CI

#119 - Use matplotlib's plot directive in the docs

Issue - State: open - Opened by yoavram about 9 years ago
Labels: docs

#118 - Docs addition and revision

Pull Request - State: closed - Opened by yoavram about 9 years ago - 1 comment
Labels: docs

#117 - FIX: fig.close gave errors

Pull Request - State: closed - Opened by yoavram about 9 years ago - 1 comment

#116 - Read and write Curveball csv files

Pull Request - State: closed - Opened by yoavram about 9 years ago - 1 comment

#115 - Make models.py agnostic to the choice of model

Issue - State: open - Opened by yoavram about 9 years ago
Labels: refactoring

#114 - CLI bug fixes

Pull Request - State: closed - Opened by yoavram about 9 years ago - 2 comments
Labels: bug, CLI

#113 - Weighted AIC and BIC - closes #112

Pull Request - State: closed - Opened by yoavram over 9 years ago - 1 comment
Labels: enhancement

#112 - Model weights

Issue - State: closed - Opened by yoavram over 9 years ago

#111 - Model classes and improved codebase

Pull Request - State: closed - Opened by yoavram over 9 years ago - 1 comment
Labels: enhancement, tests, refactoring

#110 - Lower limit on N in guess_nu

Issue - State: closed - Opened by yoavram over 9 years ago - 1 comment

#109 - Baranyi-Roberts step model

Issue - State: closed - Opened by yoavram over 9 years ago

#108 - Missing docs

Issue - State: closed - Opened by yoavram over 9 years ago
Labels: docs

#107 - Model fitting reorganization

Pull Request - State: closed - Opened by yoavram over 9 years ago - 1 comment

#106 - Warn when number of competition resamples is lower than requested

Pull Request - State: closed - Opened by yoavram over 9 years ago - 1 comment

#105 - Check dependence of parameter estimates on initial guesses

Issue - State: open - Opened by yoavram over 9 years ago

#104 - Added guess, param_max, and weights as options to the CLI - closes #76

Pull Request - State: closed - Opened by yoavram over 9 years ago - 1 comment
Labels: CLI

#103 - Explain CLI output table columns

Issue - State: open - Opened by yoavram over 9 years ago
Labels: docs, CLI

#102 - Hide future warnings when verbose is off - closes #100

Pull Request - State: closed - Opened by yoavram over 9 years ago - 1 comment
Labels: CLI

#101 - Install didn't include the data and plate_template files

Issue - State: open - Opened by yoavram over 9 years ago - 3 comments
Labels: bug, packaging

#100 - Hide FutureWarning in CLI when running with --no-verbose

Issue - State: closed - Opened by yoavram over 9 years ago - 2 comments
Labels: CLI

#99 - .exe file is created by conda convert

Issue - State: closed - Opened by yoavram over 9 years ago - 1 comment
Labels: bug, packaging

#98 - Benchmark with a 2nd order polynomial

Issue - State: closed - Opened by yoavram over 9 years ago - 1 comment
Labels: question

#97 - Plot standard deviation vs mean of the data samples

Issue - State: closed - Opened by yoavram over 9 years ago - 2 comments
Labels: enhancement

#96 - Warnning when K is not reached in the data

Issue - State: open - Opened by yoavram over 9 years ago
Labels: enhancement, question

#95 - Find max time

Issue - State: open - Opened by yoavram over 9 years ago - 1 comment
Labels: enhancement, question

#94 - Add RMSD to output

Issue - State: closed - Opened by yoavram over 9 years ago - 1 comment
Labels: enhancement

#93 - 'Edit on GitHub' links in docs - closes #84

Pull Request - State: closed - Opened by yoavram over 9 years ago - 1 comment
Labels: docs

#92 - update badges to anaconda.org; added a quickstart section

Pull Request - State: closed - Opened by yoavram over 9 years ago - 1 comment

#91 - Testing and docs for running on headless ubuntu

Pull Request - State: closed - Opened by yoavram over 9 years ago - 1 comment
Labels: docs, tests, packaging

#90 - Anaconda.org badges instead of PyPi?

Issue - State: closed - Opened by yoavram over 9 years ago
Labels: docs

#89 - Reorganize CONTRIBUTING.md

Pull Request - State: closed - Opened by yoavram over 9 years ago - 1 comment

#88 - Curveball import fails on headless machine

Issue - State: closed - Opened by yoavram over 9 years ago - 2 comments
Labels: bug, packaging

#87 - Curveball CLI installation on Ubuntu

Issue - State: closed - Opened by yoavram over 9 years ago - 1 comment
Labels: bug, CLI, packaging

#84 - "Edit on GitHub" link in docs

Issue - State: closed - Opened by yoavram over 9 years ago
Labels: docs

#80 - Test on Windows

Issue - State: open - Opened by yoavram over 9 years ago - 1 comment
Labels: tests, CI

#79 - Faster build on Travis

Issue - State: open - Opened by yoavram over 9 years ago - 2 comments
Labels: CI

#76 - More options in CLI

Issue - State: closed - Opened by Itafr over 9 years ago - 2 comments
Labels: enhancement, CLI

#73 - Input format

Issue - State: open - Opened by yoavram over 9 years ago - 1 comment
Labels: enhancement, tests, CLI, refactoring

#67 - Move deployments to public server

Issue - State: open - Opened by yoavram over 9 years ago
Labels: CI

#60 - Acknowledgements

Issue - State: open - Opened by yoavram over 9 years ago
Labels: question, docs

#58 - Illegal lag values when resampling the parameters

Issue - State: open - Opened by yoavram over 9 years ago
Labels: bug

#56 - Check if ModelResult.covar is None

Issue - State: open - Opened by yoavram over 9 years ago - 3 comments
Labels: bug

#54 - What's new section

Issue - State: closed - Opened by yoavram over 9 years ago - 1 comment
Labels: docs

#52 - Test on OS X

Issue - State: open - Opened by yoavram over 9 years ago
Labels: tests, CI

#48 - Optional dependencies

Issue - State: open - Opened by yoavram over 9 years ago - 1 comment
Labels: packaging

#45 - CONTRIBUTING.md

Issue - State: closed - Opened by yoavram over 9 years ago - 1 comment
Labels: docs

#37 - Consider if nu must be >=1

Issue - State: open - Opened by yoavram over 9 years ago - 2 comments
Labels: question

#35 - Reorganize params guessing and model fitting

Issue - State: closed - Opened by yoavram over 9 years ago
Labels: refactoring

#30 - Model fit object changes due to one of curveball's functions

Issue - State: open - Opened by yoavram over 9 years ago
Labels: bug

#29 - Fix `SettingWithCopyWarning` warnings

Issue - State: open - Opened by yoavram over 9 years ago
Labels: enhancement

#25 - Log

Issue - State: open - Opened by yoavram over 9 years ago
Labels: enhancement, CLI

GitHub / yoavram/curveball issues and pull requests