Ecosyste.ms: Issues

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GitHub / ylab-hi/scanneo2 issues and pull requests

#25 - cleave peptide for fusion gene

Issue - State: open - Opened by nttg8100 4 months ago - 3 comments

#24 - Where I can download the required argument peptides

Issue - State: closed - Opened by nttg8100 4 months ago - 2 comments

#22 - Calling the long non indel from both DNAseq and RNAseq bam file

Issue - State: closed - Opened by nttg8100 4 months ago - 5 comments

#21 - Aligned option using star

Issue - State: closed - Opened by nttg8100 5 months ago - 2 comments

#21 - Aligned option using star

Issue - State: closed - Opened by nttg8100 5 months ago - 2 comments

#20 - Spladder parallel

Pull Request - State: closed - Opened by riasc 5 months ago

#20 - Spladder parallel

Pull Request - State: closed - Opened by riasc 5 months ago

#19 - add cpus to spladder

Issue - State: closed - Opened by nttg8100 5 months ago - 2 comments

#19 - add cpus to spladder

Issue - State: closed - Opened by nttg8100 5 months ago - 2 comments

#18 - Request TESLA*fastq.gz

Issue - State: closed - Opened by nine-sarayut 5 months ago - 3 comments

#18 - Request TESLA*fastq.gz

Issue - State: closed - Opened by nine-sarayut 5 months ago - 3 comments

#17 - Paired-end Bam files causes error exception in featureCounts

Issue - State: closed - Opened by riasc 7 months ago - 2 comments

#17 - Paired-end Bam files causes error exception in featureCounts

Issue - State: closed - Opened by riasc 7 months ago - 2 comments

#16 - nthreads cannot be larger than environment variable

Issue - State: closed - Opened by riasc 7 months ago - 1 comment

#16 - nthreads cannot be larger than environment variable

Issue - State: closed - Opened by riasc 7 months ago - 1 comment

#15 - Implemented Similarity Measures

Pull Request - State: closed - Opened by riasc 7 months ago

#15 - Implemented Similarity Measures

Pull Request - State: closed - Opened by riasc 7 months ago

#14 - Add routine to catch missing input data on filesystem

Issue - State: open - Opened by riasc 7 months ago

#14 - Add routine to catch missing input data on filesystem

Issue - State: open - Opened by riasc 7 months ago

#13 - Update Snakemake 8 and Gather/Scatter Indel Calling

Pull Request - State: closed - Opened by riasc 7 months ago

#12 - Corrected Linkage of Prediction Tools to Prioritization

Pull Request - State: closed - Opened by riasc 8 months ago

#12 - Corrected Linkage of Prediction Tools to Prioritization

Pull Request - State: closed - Opened by riasc 8 months ago

#11 - Fix Missing/Outdated Genome in Exitron Calling (Switch to ENSEMBL)

Pull Request - State: closed - Opened by riasc 8 months ago

#10 - Fix Missing-Annotation Error in Exitron Calling

Pull Request - State: closed - Opened by riasc 8 months ago

#9 - Fixed Issues when no normal samples is provided

Pull Request - State: closed - Opened by riasc 8 months ago

#8 - GATK Speedup Gather&Scatter

Issue - State: closed - Opened by riasc 9 months ago - 1 comment
Labels: enhancement

#7 - Improve Download of VEP Cache (+small fixes)

Pull Request - State: closed - Opened by riasc 9 months ago

#6 - Slow FTP download of VEP Cache

Issue - State: closed - Opened by riasc 9 months ago - 1 comment

#5 - Minor fixes

Pull Request - State: closed - Opened by riasc 9 months ago

#4 - MHC-I genotyping on Split BAMs

Issue - State: open - Opened by riasc 9 months ago

#3 - Devel

Pull Request - State: closed - Opened by riasc about 1 year ago

#2 - Devel

Pull Request - State: closed - Opened by riasc about 1 year ago

#1 - updating automated routines

Pull Request - State: closed - Opened by riasc over 1 year ago