yhoogstrate/fuma issues and pull requests

#50 - Fix bug when GTF line has no gene/transcript id

Pull Request - State: closed - Opened by Redmar-van-den-Berg about 2 years ago - 1 comment

#49 - Merge the changes to use Python3 to master

Pull Request - State: closed - Opened by Redmar-van-den-Berg about 3 years ago

#48 - Make FuMa work with Python3

Pull Request - State: closed - Opened by Redmar-van-den-Berg about 3 years ago - 2 comments

#47 - PyPI requires a valid author email, or none at all

Pull Request - State: closed - Opened by Redmar-van-den-Berg about 3 years ago

#46 - python2 -> python3

Issue - State: closed - Opened by yhoogstrate about 3 years ago
Labels: enhancement

#45 - v3.0.7

Pull Request - State: closed - Opened by yhoogstrate about 3 years ago - 3 comments

#44 - Fix issue 43

Pull Request - State: closed - Opened by Redmar-van-den-Berg over 4 years ago - 4 comments

#43 - FuMa crashes on empty fusion file

Issue - State: closed - Opened by Redmar-van-den-Berg over 4 years ago

#42 - changes to support arriba

Pull Request - State: closed - Opened by yhoogstrate over 4 years ago

#41 - Pizzly support

Issue - State: closed - Opened by mblue9 about 7 years ago - 2 comments

#40 - Problem running the Tophat Fusion Pre (fusions.out) results

Issue - State: closed - Opened by KeyTals over 7 years ago - 5 comments
Labels: bug

#39 - FusionCatcher Error

Issue - State: closed - Opened by KeyTals over 7 years ago - 3 comments

#38 - Pypi compatibility updates

Pull Request - State: closed - Opened by yhoogstrate almost 8 years ago - 1 comment

#37 - [WIP] Python3 compatiblity (excl. HTSeq)

Pull Request - State: closed - Opened by yhoogstrate about 8 years ago

#36 - FuMa compatibility changes

Pull Request - State: closed - Opened by yhoogstrate about 8 years ago

#35 - Porting to Python 3

Issue - State: closed - Opened by bow about 8 years ago - 2 comments
Labels: enhancement, wontfix

#34 - Suppresses a warning for certain installations

Pull Request - State: closed - Opened by yhoogstrate over 8 years ago

#33 - Minor changes that have no impact on the function

Pull Request - State: closed - Opened by yhoogstrate over 8 years ago

#32 - Refactored code

Pull Request - State: closed - Opened by yhoogstrate over 8 years ago - 1 comment

#31 - Bugfix

Pull Request - State: closed - Opened by yhoogstrate over 8 years ago

#30 - Removal unused trans seq vars

Pull Request - State: closed - Opened by yhoogstrate over 8 years ago

#29 - Changed verbosity settings

Pull Request - State: closed - Opened by yhoogstrate over 8 years ago - 1 comment

#28 - Another reduction of memory footpint

Pull Request - State: closed - Opened by yhoogstrate over 8 years ago

#27 - Huge reduction of memory footprint

Pull Request - State: closed - Opened by yhoogstrate over 8 years ago

#26 - memory overload

Issue - State: closed - Opened by yhoogstrate over 8 years ago
Labels: enhancement

#25 - Some mem reduction steps

Pull Request - State: closed - Opened by yhoogstrate over 8 years ago

#24 - More reduction of memory usage

Pull Request - State: closed - Opened by yhoogstrate over 8 years ago

#23 - Additional comment

Pull Request - State: closed - Opened by yhoogstrate over 8 years ago

#22 - Added utility for GTF to BED conversion

Pull Request - State: closed - Opened by yhoogstrate over 8 years ago

#21 - Reduction of memory footprint

Pull Request - State: closed - Opened by yhoogstrate over 8 years ago

#20 - JAFFA format support

Issue - State: closed - Opened by NoeGeno over 8 years ago - 2 comments

#19 - --format="extensive" not working

Issue - State: closed - Opened by yhoogstrate over 8 years ago
Labels: bug, wontfix

#18 - Minor change in Readme (description for SOAPFuse and EricScript)

Pull Request - State: closed - Opened by yhoogstrate over 8 years ago - 1 comment

#17 - Fixes support for EricScript, installation numpy & exception handling

Pull Request - State: closed - Opened by yhoogstrate over 8 years ago

#16 - Support for SOAPFuse and EricScript

Pull Request - State: closed - Opened by yhoogstrate over 8 years ago

#15 - Readme: minor update adding URL to CG format specification

Pull Request - State: closed - Opened by yhoogstrate over 8 years ago

#14 - Soapfuse format support

Issue - State: closed - Opened by avkitex over 8 years ago - 15 comments
Labels: enhancement, question

#13 - Changes to relative bedpe conversion

Pull Request - State: closed - Opened by yhoogstrate over 8 years ago

#12 - Small fix that allows CG files to have empty strand column

Pull Request - State: closed - Opened by yhoogstrate over 8 years ago

#11 - Small changes to the utilities and the export-to CG function

Pull Request - State: closed - Opened by yhoogstrate over 8 years ago

#10 - Small update for printing Fusion genes (Only affects API/dev)

Pull Request - State: closed - Opened by yhoogstrate almost 9 years ago

#9 - Strand specific default off long genes column

Pull Request - State: closed - Opened by yhoogstrate almost 9 years ago

#8 - Installation fails but still creates binary when numpy is missing

Issue - State: closed - Opened by yhoogstrate almost 9 years ago - 1 comment
Labels: invalid

#7 - v2.10.1: fix for list output (1 tab at each line too much)

Pull Request - State: closed - Opened by yhoogstrate almost 9 years ago

#6 - v2.10.0 (many changes)

Pull Request - State: closed - Opened by yhoogstrate almost 9 years ago

#5 - Support for StarFusion format

Pull Request - State: closed - Opened by yhoogstrate about 9 years ago

#4 - Correct version number

Pull Request - State: closed - Opened by yhoogstrate about 9 years ago

#3 - Version 2.9.1: Support for Chimera prettyPrint format

Pull Request - State: closed - Opened by yhoogstrate about 9 years ago

#2 - Stranded fusions

Pull Request - State: closed - Opened by yhoogstrate about 9 years ago

#1 - Complex subset problem with n > 2 datasets

Issue - State: closed - Opened by yhoogstrate almost 10 years ago - 1 comment

GitHub / yhoogstrate/fuma issues and pull requests