Ecosyste.ms: Issues

An open API service for providing issue and pull request metadata for open source projects.

GitHub / ygidtu/trackplot issues and pull requests

#99 - Strand assignment problem for junctions

Issue - State: open - Opened by shiro-kur 20 days ago - 2 comments

#98 - Order by polya tail length

Issue - State: open - Opened by MustafaElshani 4 months ago - 3 comments

#97 - Set y-axis scale for different sample types

Issue - State: closed - Opened by czfoo 8 months ago - 2 comments

#96 - adjustText breaking changes

Issue - State: closed - Opened by SarahNadeau 9 months ago - 2 comments

#95 - Google Colab Example

Issue - State: open - Opened by abishpius over 1 year ago - 2 comments

#94 - correct installation doc numbering

Pull Request - State: closed - Opened by ygidtu over 1 year ago

#93 - By increasing the event length

Issue - State: closed - Opened by sivasubramanics over 1 year ago - 3 comments

#92 - fix several bugs

Pull Request - State: closed - Opened by ygidtu over 1 year ago

#91 - update the readme doc

Pull Request - State: closed - Opened by zhou-ran over 1 year ago

#90 - update the doc of installation

Pull Request - State: closed - Opened by zhou-ran over 1 year ago

#89 - refine doc

Pull Request - State: closed - Opened by zhou-ran over 1 year ago

#88 - installation doc

Pull Request - State: closed - Opened by zhou-ran over 1 year ago

#87 - update cmd doc

Pull Request - State: closed - Opened by zhou-ran over 1 year ago

#86 - update docs and add appimage support

Pull Request - State: closed - Opened by ygidtu over 1 year ago

#85 - update cmd doc

Pull Request - State: closed - Opened by zhou-ran over 1 year ago

#84 - more interactive and informative web layout

Pull Request - State: closed - Opened by ygidtu over 1 year ago

#83 - update doc

Pull Request - State: closed - Opened by zhou-ran over 1 year ago

#81 - update diagram

Pull Request - State: closed - Opened by zhou-ran almost 2 years ago

#80 - update hic_domain and doc

Pull Request - State: closed - Opened by zhou-ran almost 2 years ago

#79 - update install junction_log

Pull Request - State: closed - Opened by zhou-ran almost 2 years ago

#78 - update install order and hic.2.tsv

Pull Request - State: closed - Opened by zhou-ran almost 2 years ago

#77 - update fig

Pull Request - State: closed - Opened by zhou-ran almost 2 years ago

#76 - rename to trackplot

Pull Request - State: closed - Opened by ygidtu almost 2 years ago

#75 - update bench and 10x fig

Pull Request - State: closed - Opened by zhou-ran almost 2 years ago

#74 - update ptbp example and atac umi tag

Pull Request - State: closed - Opened by zhou-ran almost 2 years ago

#73 - Dev fix bugs and update web

Pull Request - State: closed - Opened by ygidtu almost 2 years ago

#72 - update hic domain

Pull Request - State: closed - Opened by zhou-ran almost 2 years ago

#71 - update pdf and doc

Pull Request - State: closed - Opened by zhou-ran almost 2 years ago

#70 - update command document and function of domain selection

Pull Request - State: closed - Opened by zhou-ran almost 2 years ago

#69 - update junction doc

Pull Request - State: closed - Opened by zhou-ran almost 2 years ago

#68 - update readsegment and doc

Pull Request - State: closed - Opened by zhou-ran almost 2 years ago

#67 - update interactive notebook and web document

Pull Request - State: closed - Opened by zhou-ran almost 2 years ago

#66 - update article pdf

Pull Request - State: closed - Opened by zhou-ran almost 2 years ago

#65 - update example_article_file

Pull Request - State: closed - Opened by zhou-ran almost 2 years ago

#64 - better junction layout in default mode

Pull Request - State: closed - Opened by ygidtu about 2 years ago

#63 - update to 0.1.3, fix several junction related issues

Pull Request - State: closed - Opened by ygidtu about 2 years ago

#62 - Dev 0.1.2

Pull Request - State: closed - Opened by ygidtu about 2 years ago

#61 - v0.1.1

Pull Request - State: closed - Opened by ygidtu about 2 years ago

#60 - Assorted dumb questions considering sashimi and stranded libraries

Issue - State: closed - Opened by ckuenne about 2 years ago - 8 comments

#59 - fix multiprocessing bugs

Pull Request - State: closed - Opened by ygidtu about 2 years ago

#58 - Crash when reproducing sashimi example

Issue - State: closed - Opened by ckuenne about 2 years ago - 2 comments

#57 - update to v0.0.9, enable multiprocessing with conditions

Pull Request - State: closed - Opened by ygidtu about 2 years ago

#56 - update to v0.0.8, fix --log, add conda config

Pull Request - State: closed - Opened by ygidtu about 2 years ago

#55 - update to v0.0.7

Pull Request - State: closed - Opened by ygidtu about 2 years ago

#54 - update dev

Pull Request - State: closed - Opened by ygidtu about 2 years ago

#53 - KeyError: 'transcript_name'

Issue - State: closed - Opened by Puriney about 2 years ago - 4 comments

#52 - Consider use absolute path

Issue - State: closed - Opened by Puriney about 2 years ago - 6 comments

#51 - v0.0.6

Pull Request - State: closed - Opened by ygidtu over 2 years ago

#50 - add ref

Pull Request - State: closed - Opened by zhou-ran over 2 years ago

#49 - Dev

Pull Request - State: closed - Opened by ygidtu over 2 years ago

#48 - Dev

Pull Request - State: closed - Opened by zhou-ran over 2 years ago

#47 - update web to v0.0.5, fix several bugs, update docs

Pull Request - State: closed - Opened by ygidtu over 2 years ago

#46 - add readme diagram

Pull Request - State: closed - Opened by zhou-ran over 2 years ago

#45 - Dev

Pull Request - State: closed - Opened by zhou-ran over 2 years ago

#44 - update doc

Pull Request - State: closed - Opened by zhou-ran over 2 years ago

#43 - update to v0.0.4

Pull Request - State: closed - Opened by ygidtu over 2 years ago

#42 - Dev

Pull Request - State: closed - Opened by ygidtu over 2 years ago

#41 - add analysis reproduction

Pull Request - State: closed - Opened by zhou-ran over 2 years ago

#40 - update dev

Pull Request - State: closed - Opened by ygidtu over 2 years ago

#39 - Dev

Pull Request - State: closed - Opened by ygidtu over 2 years ago

#38 - update plot_hic y boundary

Pull Request - State: closed - Opened by zhou-ran over 2 years ago

#37 - update strand-aware

Pull Request - State: closed - Opened by zhou-ran over 2 years ago

#36 - add include junction parameters

Pull Request - State: closed - Opened by zhou-ran over 2 years ago

#35 - Dev

Pull Request - State: closed - Opened by ygidtu over 2 years ago

#34 - add is_single_cell for hic track

Pull Request - State: closed - Opened by zhou-ran over 2 years ago

#33 - add primary ref select in reference plot, and fix process of hic data

Pull Request - State: closed - Opened by zhou-ran over 2 years ago

#32 - update m6a tag and igv blank plot

Pull Request - State: closed - Opened by zhou-ran over 2 years ago

#31 - update m6a, polya setting

Pull Request - State: closed - Opened by zhou-ran over 2 years ago

#30 - update command line and picture in doc

Pull Request - State: closed - Opened by zhou-ran over 2 years ago

#29 - fix junction number and splice span bugs

Pull Request - State: closed - Opened by zhou-ran over 2 years ago

#28 - fix some error in site plot and demultiplex barcode

Pull Request - State: closed - Opened by zhou-ran over 2 years ago

#27 - upgrade web to vue3 & vite for security alerts

Pull Request - State: closed - Opened by ygidtu over 2 years ago

#26 - Dev

Pull Request - State: closed - Opened by ygidtu over 2 years ago

#25 - fix strand-aware bug in single-end, and error in guess_protein_id

Pull Request - State: closed - Opened by zhou-ran over 2 years ago

#24 - update hic plot

Pull Request - State: closed - Opened by zhou-ran over 2 years ago

#23 - update sc-mode picture

Pull Request - State: closed - Opened by zhou-ran over 2 years ago

#22 - fix hic legend, add hic doc, and update example.png

Pull Request - State: closed - Opened by zhou-ran over 2 years ago

#21 - add hic module

Pull Request - State: closed - Opened by zhou-ran over 2 years ago

#20 - update strand-aware density plot

Pull Request - State: closed - Opened by zhou-ran over 2 years ago

#19 - update scale of igv-like, fix graph coordinate

Pull Request - State: closed - Opened by zhou-ran over 2 years ago

#18 - update heatmap link

Pull Request - State: closed - Opened by zhou-ran over 2 years ago

#17 - update heatmap and line plot png

Pull Request - State: closed - Opened by zhou-ran over 2 years ago

#16 - Dev

Pull Request - State: closed - Opened by zhou-ran over 2 years ago

#15 - Dev

Pull Request - State: closed - Opened by zhou-ran over 2 years ago

#14 - add local domain mode

Pull Request - State: closed - Opened by zhou-ran over 2 years ago

#13 - add sorted func to igv

Pull Request - State: closed - Opened by zhou-ran over 2 years ago

#12 - update domain, replot example pic

Pull Request - State: closed - Opened by zhou-ran over 2 years ago

#11 - Dev

Pull Request - State: closed - Opened by zhou-ran over 2 years ago

#10 - Dev

Pull Request - State: closed - Opened by zhou-ran over 2 years ago

#9 - add igv like plot, regard deletion as match in rna-seq, add deletion …

Pull Request - State: closed - Opened by zhou-ran over 2 years ago

#8 - Dev

Pull Request - State: closed - Opened by zhou-ran over 2 years ago

#7 - Dev

Pull Request - State: closed - Opened by zhou-ran over 2 years ago

#6 - Dev

Pull Request - State: closed - Opened by zhou-ran over 2 years ago

#5 - add additional track support and adjust plot parameter

Pull Request - State: closed - Opened by zhou-ran almost 3 years ago

#4 - plot domain in refernece

Pull Request - State: closed - Opened by zhou-ran almost 3 years ago

#3 - update coordinate map and reference plot

Pull Request - State: closed - Opened by zhou-ran almost 3 years ago

#2 - finalize protein coordinate to genomic coordinate

Pull Request - State: closed - Opened by zhou-ran almost 3 years ago

#1 - add pep coordiante transfer

Pull Request - State: closed - Opened by zhou-ran almost 3 years ago