Ecosyste.ms: Issues

An open API service for providing issue and pull request metadata for open source projects.

GitHub / yeatmanlab/AFQ-Insight issues and pull requests

#147 - [ENH] make table optional

Pull Request - State: closed - Opened by 36000 8 months ago - 2 comments

#146 - Allow sklearn to update to current version.

Pull Request - State: open - Opened by arokem 9 months ago

#145 - Docbuild can't find intersphinx inventory

Issue - State: open - Opened by arokem 9 months ago

#144 - Update groupyr 0 3 3

Pull Request - State: closed - Opened by arokem 9 months ago - 1 comment

#143 - Installation issue - sklearn dependency

Issue - State: closed - Opened by pierre-nedelec 10 months ago - 2 comments

#142 - Autoencoder

Pull Request - State: open - Opened by arokem 11 months ago - 1 comment

#141 - Upgrade python version

Pull Request - State: closed - Opened by arokem 11 months ago

#139 - MAINT: sklearn: if_delegate_has_method deprecation

Pull Request - State: closed - Opened by arokem about 1 year ago - 1 comment

#138 - Updates soon-to-be-deprecated Seaborn API.

Pull Request - State: open - Opened by arokem over 1 year ago - 1 comment

#137 - Documentation URL no longer works

Issue - State: open - Opened by arokem almost 2 years ago

#136 - Display tract profiles grouped by var_interest

Pull Request - State: open - Opened by pierre-nedelec almost 2 years ago

#135 - Generate bootstrap confidence intervals on tract profiles

Issue - State: open - Opened by arokem almost 2 years ago

#132 - `len(AFQDataset.sessions)` is not equal to `len(AFQDataset.subjects`

Issue - State: open - Opened by arokem almost 2 years ago - 2 comments

#131 - Should bundle-wise averaging use nanmean?

Issue - State: open - Opened by arokem almost 2 years ago

#130 - It would be nice to have an `AFQDataset.bundles` attribute

Issue - State: open - Opened by arokem almost 2 years ago

#129 - Add documentation on M1 installation issues

Issue - State: open - Opened by richford almost 2 years ago

#127 - WIP: Allow DataFrames as inputs.

Pull Request - State: open - Opened by arokem almost 2 years ago

#126 - DOC: Adds statsmodels fit of a "standard" statistical model.

Pull Request - State: closed - Opened by arokem about 2 years ago - 2 comments

#125 - DOC: Adds a tract profile plot to the ALS example.

Pull Request - State: open - Opened by arokem about 2 years ago - 1 comment

#124 - Add AFQDataset.from_dataframe() static method

Issue - State: open - Opened by richford over 2 years ago

#123 - Use the new from_dataset method to initialize objects in examples.

Pull Request - State: closed - Opened by arokem over 2 years ago - 2 comments

#122 - Add Python 3.10 to CI workflows

Pull Request - State: closed - Opened by richford over 2 years ago - 2 comments
Labels: documentation, ci

#121 - Add HBN

Pull Request - State: closed - Opened by richford over 2 years ago - 1 comment
Labels: enhancement, effort: low

#120 - Add python 3.10 support

Issue - State: closed - Opened by richford over 2 years ago - 1 comment

#119 - Add fit, fit_transform, transform, predict, and score methods

Pull Request - State: closed - Opened by richford over 2 years ago - 13 comments

#118 - Add ability to transform datasets

Issue - State: closed - Opened by richford over 2 years ago
Labels: enhancement, question, effort: medium

#117 - Add attention mechanism to the tf nn models

Issue - State: open - Opened by richford over 2 years ago
Labels: enhancement

#116 - Add fetcher for the HBN data

Issue - State: closed - Opened by richford over 2 years ago
Labels: enhancement

#115 - Make the augmentation functions work on GPU

Issue - State: open - Opened by richford over 2 years ago
Labels: enhancement

#114 - Tensorflow datasets => CNN

Issue - State: closed - Opened by arokem over 2 years ago - 6 comments

#113 - NF: Allow passing an AFQDataset object as input.

Pull Request - State: closed - Opened by arokem over 2 years ago - 2 comments

#112 - Add 1D cnn models and data augmentation

Pull Request - State: closed - Opened by richford over 2 years ago - 1 comment

#111 - Matching fails when dataframe has non-numeric indices

Issue - State: closed - Opened by richford over 2 years ago - 2 comments

#110 - Remove groupyr ref from user guide

Pull Request - State: closed - Opened by richford almost 3 years ago

#109 - Remove groupyr references from contribution guide

Pull Request - State: closed - Opened by richford almost 3 years ago

#107 - Add matching module with first draft of MDM

Pull Request - State: closed - Opened by 36000 almost 3 years ago - 9 comments

#106 - Add utilities for matching between participants

Issue - State: closed - Opened by arokem almost 3 years ago - 2 comments

#105 - Make AFQDataset work with different input formats and make indexable

Pull Request - State: closed - Opened by richford almost 3 years ago
Labels: enhancement, documentation

#104 - ENH: Expose figsize and tight_layout kwargs to plot_tract_profiles

Pull Request - State: closed - Opened by richford almost 3 years ago

#103 - Reading y with missing values

Issue - State: closed - Opened by arokem almost 3 years ago - 1 comment

#102 - Expose legend kwargs to user in plot_tract_profiles

Pull Request - State: closed - Opened by richford almost 3 years ago
Labels: enhancement

#101 - BF: Fix label encoding in the presence of NaN labels

Pull Request - State: closed - Opened by richford almost 3 years ago - 1 comment
Labels: bug

#100 - Label encoding is broken in the presence of NaNs

Issue - State: closed - Opened by richford almost 3 years ago
Labels: bug

#99 - RF: For plotting, sometimes you don't want to group by any other variable

Pull Request - State: closed - Opened by arokem almost 3 years ago - 1 comment

#98 - Add capabilities to split and impute AFQDataset

Issue - State: closed - Opened by richford almost 3 years ago
Labels: enhancement

#97 - Update docstring to reflect the default value

Pull Request - State: closed - Opened by arokem almost 3 years ago

#96 - Add enforce_sub_prefix option to AFQDataset and load_afq_data

Pull Request - State: closed - Opened by richford almost 3 years ago - 2 comments
Labels: enhancement

#95 - Add a RegressOutTransformer

Issue - State: open - Opened by richford about 3 years ago
Labels: enhancement

#94 - Match subject identifiers with and without the "sub-" prefix

Issue - State: closed - Opened by richford about 3 years ago
Labels: enhancement

#93 - Add a drop_na parameter to AFQDataset and load_afq_data

Issue - State: closed - Opened by richford about 3 years ago - 1 comment
Labels: enhancement

#92 - Fetcher for HCP phenotypic data

Issue - State: open - Opened by arokem about 3 years ago - 2 comments

#91 - BF: Cast integer session identifiers to strings.

Pull Request - State: closed - Opened by arokem about 3 years ago - 4 comments

#90 - WIP Add 1-D data augmentation methods

Pull Request - State: closed - Opened by richford about 3 years ago - 1 comment

#89 - Add an AFQDataset class

Pull Request - State: closed - Opened by richford over 3 years ago - 1 comment

#88 - WIP: Adds option to plot the callosal bundle profiles

Pull Request - State: closed - Opened by arokem over 3 years ago - 3 comments

#87 - Add some more sklearn API to the CNN model?

Issue - State: open - Opened by arokem over 3 years ago

#86 - TST: Improve coverage.

Pull Request - State: closed - Opened by arokem over 3 years ago - 1 comment

#85 - Fixes tests broken by previous commits.

Pull Request - State: closed - Opened by arokem over 3 years ago - 1 comment

#84 - DOC + RF: Adds docstrings to class definitions.

Pull Request - State: closed - Opened by arokem over 3 years ago - 3 comments

#83 - ENH: Add Convolutional Neural Network Models

Pull Request - State: closed - Opened by richford over 3 years ago - 2 comments
Labels: enhancement, effort: high, impact: high

#82 - Add callosal bundles to plot_tract_profiles

Pull Request - State: closed - Opened by richford over 3 years ago - 1 comment

#81 - The output from load_afq_data is getting pretty busy

Issue - State: closed - Opened by richford over 3 years ago - 1 comment
Labels: question

#80 - ENH: Allow bundle aggregation and put load_afq_data output into a named_tuple

Pull Request - State: closed - Opened by richford over 3 years ago - 2 comments
Labels: enhancement

#79 - DOC: Make examples a bit more explicit

Pull Request - State: closed - Opened by arokem over 3 years ago - 3 comments

#78 - Add a `GroupMeanTransformer`

Issue - State: closed - Opened by arokem over 3 years ago - 2 comments

#77 - Add research examples to documentation

Pull Request - State: closed - Opened by richford over 3 years ago - 1 comment
Labels: documentation

#76 - ENH: Add dataset fetchers

Pull Request - State: closed - Opened by richford over 3 years ago

#75 - Rename power_transformer to transformer in the AFQ pipelines

Issue - State: closed - Opened by richford over 3 years ago
Labels: enhancement, documentation, effort: low, impact: low

#74 - Add a real research example to the sphinx gallery

Issue - State: closed - Opened by richford over 3 years ago
Labels: documentation, effort: medium, impact: medium

#73 - Adds error handling for cases where users forget to set target_cols.

Pull Request - State: closed - Opened by arokem over 3 years ago

#72 - WIP: Convolutional neural network models

Pull Request - State: closed - Opened by arokem over 3 years ago - 9 comments

#71 - ENH: Add unsupervised boolean parameter to load_afq_data

Pull Request - State: closed - Opened by richford over 3 years ago - 1 comment
Labels: enhancement, effort: low, impact: medium

#70 - Loading data without `subjects` table for unsupervised learning

Issue - State: closed - Opened by arokem over 3 years ago - 1 comment
Labels: enhancement, effort: low, impact: medium

#69 - ENH: Add bundle profile plotting function

Pull Request - State: closed - Opened by richford over 3 years ago - 2 comments

#68 - Remove transformers that were migrated to groupyr

Pull Request - State: closed - Opened by richford over 3 years ago
Labels: enhancement

#67 - DEP: Loosen groupyr dependency

Pull Request - State: closed - Opened by richford almost 4 years ago

#66 - DEP: Loosen dependency requirements

Pull Request - State: closed - Opened by richford almost 4 years ago - 3 comments
Labels: ci

#65 - Fixes broken links

Pull Request - State: closed - Opened by arokem almost 4 years ago - 1 comment

#64 - WIP: Cross-validation support for multiple covariate matching

Pull Request - State: closed - Opened by mnarayan almost 4 years ago - 2 comments

#63 - Implement stratified cross-validation for multiple covariates

Issue - State: open - Opened by mnarayan almost 4 years ago

#62 - Implement Combat transformer

Issue - State: closed - Opened by richford almost 4 years ago - 1 comment
Labels: enhancement

#61 - ENH: Stratify bootstrap replicants in SerialBaggingClassifier

Pull Request - State: closed - Opened by richford almost 4 years ago
Labels: enhancement, effort: low, impact: medium

#60 - ENH: Add SerialBagging classes

Pull Request - State: closed - Opened by richford almost 4 years ago
Labels: enhancement, effort: medium, impact: medium

#59 - ENH: Add ensemble estimators to pipelines

Pull Request - State: closed - Opened by richford almost 4 years ago - 3 comments
Labels: enhancement, effort: medium, impact: high

#58 - `load_afq_data` should accept multiple metrics in file

Issue - State: closed - Opened by richford almost 4 years ago - 1 comment
Labels: enhancement, effort: low, impact: medium

#57 - FIX: Add option to serialize cv execution

Pull Request - State: closed - Opened by richford about 4 years ago

#56 - ENH: Use joblib.Parallel instead of custom groupyr._ProgressParallel

Pull Request - State: closed - Opened by richford about 4 years ago
Labels: enhancement, effort: low, impact: medium

#55 - ENH: Add functions and test for outer cross-validation loop

Pull Request - State: closed - Opened by richford about 4 years ago
Labels: enhancement, effort: medium, impact: medium

#54 - FIX: Use target transformer only if requested by user

Pull Request - State: closed - Opened by richford about 4 years ago
Labels: bug

#53 - ENH: Bump groupyr version

Pull Request - State: closed - Opened by richford about 4 years ago

#52 - ENH: Use sklearn LabelEncoder in load_afq_data and return classes

Pull Request - State: closed - Opened by richford about 4 years ago

#51 - ENH: Increase flexibility of load_afq_data

Pull Request - State: closed - Opened by richford about 4 years ago
Labels: enhancement

#50 - REF: Use groupyr

Pull Request - State: closed - Opened by richford about 4 years ago - 1 comment
Labels: enhancement

#49 - Migrate to groupyr

Issue - State: closed - Opened by richford about 4 years ago