Ecosyste.ms: Issues

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GitHub / yardencsGitHub/tweetynet issues and pull requests

#222 - Deleted dependency detected

Issue - State: closed - Opened by ashishbijlani 9 months ago - 1 comment
Labels: wontfix

#221 - termination message

Issue - State: closed - Opened by abscodeice 10 months ago - 2 comments

#219 - CLN: Make fixes to work with vak 0.8.0, fixes #218

Pull Request - State: closed - Opened by NickleDave over 1 year ago

#218 - Make TweetyNet work with vak 0.8.0

Issue - State: closed - Opened by NickleDave over 1 year ago

#217 - CI: Fix ci.yml so we don't get spurious failures

Pull Request - State: closed - Opened by NickleDave about 2 years ago - 1 comment

#216 - Fix dependencies, remove logger arg

Pull Request - State: closed - Opened by NickleDave about 2 years ago

#214 - DEV: raise lower bound on Python to 3.8

Issue - State: closed - Opened by NickleDave about 2 years ago

#213 - Pre-trained model

Issue - State: closed - Opened by danstowell over 2 years ago - 5 comments

#212 - document code in ./article/README.md, fix #197

Pull Request - State: closed - Opened by NickleDave over 2 years ago

#211 - finish writing 'replicate-key-results/runall.sh'

Issue - State: closed - Opened by NickleDave over 2 years ago
Labels: wontfix

#210 - add src/scripts/results-dataset-scripts

Pull Request - State: closed - Opened by NickleDave over 2 years ago

#209 - add email + orcid for Emily to CITATION.cff

Pull Request - State: closed - Opened by NickleDave over 2 years ago

#208 - Fix link to gif

Pull Request - State: closed - Opened by NickleDave over 2 years ago

#207 - Add demo gif

Pull Request - State: closed - Opened by NickleDave over 2 years ago

#206 - make more updates to README, fix #203

Pull Request - State: closed - Opened by NickleDave over 2 years ago

#205 - make DVC dataset and add links to README

Issue - State: closed - Opened by NickleDave over 2 years ago - 1 comment

#204 - Error processing files with one annotation

Issue - State: closed - Opened by vivinastase over 2 years ago - 6 comments
Labels: BUG

#203 - add links to datasets in cloud storage, in article README

Issue - State: closed - Opened by NickleDave over 2 years ago - 1 comment

#202 - DOC: add CITATION.cff, fixes #162

Pull Request - State: closed - Opened by NickleDave over 2 years ago

#201 - add src/scripts/replicate-key-result/runall.sh

Pull Request - State: closed - Opened by NickleDave over 2 years ago

#200 - add .csv files generated by `vak prep`

Pull Request - State: closed - Opened by NickleDave over 2 years ago

#199 - fix up conda env files for article

Issue - State: closed - Opened by NickleDave over 2 years ago - 1 comment

#198 - DOC: revise README, fixes #196

Pull Request - State: closed - Opened by NickleDave over 2 years ago

#197 - finish documenting code in `./article`

Issue - State: closed - Opened by NickleDave over 2 years ago

#195 - Prep for conda forge

Pull Request - State: closed - Opened by NickleDave over 2 years ago

#194 - Clean up for version 0.7.0

Pull Request - State: closed - Opened by NickleDave over 2 years ago - 1 comment

#193 - Add env files and readme to article

Pull Request - State: closed - Opened by NickleDave over 2 years ago

#192 - add files to `./article` that capture environment used for results in paper

Issue - State: closed - Opened by NickleDave over 2 years ago
Labels: writing/paper

#191 - add README to `./article` that documents how to install / reproduce article results

Issue - State: closed - Opened by NickleDave over 2 years ago
Labels: writing/paper, DOC

#190 - add latex files for submitted revision, fix #189

Pull Request - State: closed - Opened by NickleDave over 2 years ago

#189 - add submitted revision, .tex, .bib, etc

Issue - State: closed - Opened by NickleDave almost 3 years ago

#188 - CLN: factor out source data code, fixes #187

Pull Request - State: closed - Opened by NickleDave almost 3 years ago

#187 - factor out source data code

Issue - State: closed - Opened by NickleDave almost 3 years ago

#184 - docs: add zhehao-nkd as a contributor for bug

Pull Request - State: closed - Opened by allcontributors[bot] almost 3 years ago

#183 - Fix packaging, fixes #177

Pull Request - State: closed - Opened by NickleDave almost 3 years ago

#182 - EXPT: run a couple more window size experiments

Pull Request - State: closed - Opened by NickleDave almost 3 years ago - 2 comments

#181 - make threshold lines thicker in annotation figure

Pull Request - State: closed - Opened by NickleDave almost 3 years ago - 1 comment

#180 - add separate README to article/ that documents how to install

Issue - State: closed - Opened by NickleDave almost 3 years ago
Labels: DOC

#179 - Create annotation figure spectrograms with matlab

Pull Request - State: closed - Opened by yardencsGitHub almost 3 years ago - 3 comments

#178 - fix panel + tweak layout of bf-behavior.ai and .png

Pull Request - State: closed - Opened by NickleDave almost 3 years ago

#177 - fix packaging

Issue - State: closed - Opened by NickleDave almost 3 years ago - 2 comments
Labels: BUG, DEV

#176 - swapping panels A,B

Pull Request - State: closed - Opened by yardencsGitHub almost 3 years ago

#175 - FIG: change 'unl' to 'bg' in schematic figure

Pull Request - State: closed - Opened by NickleDave almost 3 years ago

#174 - Tweetynet v svm stats

Pull Request - State: closed - Opened by yardencsGitHub almost 3 years ago - 1 comment

#173 - Run filter size and number expts #130

Pull Request - State: closed - Opened by NickleDave almost 3 years ago

#172 - Vak crashes when .cbin files dont have corresponding .rec files

Issue - State: closed - Opened by avanikop almost 3 years ago - 2 comments

#171 - adopt all-contributors

Issue - State: closed - Opened by NickleDave almost 3 years ago - 2 comments
Labels: ENH, DOC

#170 - BUG: remove 'padding' from kwargs to fix #166

Pull Request - State: closed - Opened by NickleDave almost 3 years ago - 4 comments

#169 - fix y limits in tweetynet-v-svm figure

Pull Request - State: closed - Opened by NickleDave almost 3 years ago

#168 - add a code of conduct

Issue - State: closed - Opened by NickleDave almost 3 years ago - 1 comment
Labels: DOC

#167 - add a contributing.md

Issue - State: closed - Opened by NickleDave almost 3 years ago - 1 comment
Labels: wontfix, DOC

#166 - fix "Invalid padding string 'SAME'" error that pytorch > 1.7.1 raises

Issue - State: closed - Opened by NickleDave almost 3 years ago - 1 comment
Labels: BUG

#165 - add demo GIF

Issue - State: closed - Opened by NickleDave almost 3 years ago - 1 comment
Labels: DOC

#164 - fix link in README, tweak text slightly

Pull Request - State: closed - Opened by NickleDave almost 3 years ago

#163 - make further tweaks to architecture figures

Pull Request - State: closed - Opened by NickleDave almost 3 years ago

#162 - add citation.cff file

Issue - State: closed - Opened by NickleDave almost 3 years ago - 1 comment
Labels: DOC

#161 - regenerate tweetynet-v-svm fig with final results

Pull Request - State: closed - Opened by NickleDave almost 3 years ago

#160 - Add final canary tweetynet v svm results

Pull Request - State: closed - Opened by NickleDave almost 3 years ago

#159 - commit tweaks I forgot to commit

Pull Request - State: closed - Opened by NickleDave almost 3 years ago

#158 - rewrite post-processing + hyperparams fig

Pull Request - State: closed - Opened by NickleDave almost 3 years ago

#157 - BUG: fix how 'semi-automated cleaning' works in `hvc.resegment`

Pull Request - State: closed - Opened by NickleDave almost 3 years ago

#156 - Tweak figs

Pull Request - State: closed - Opened by NickleDave almost 3 years ago

#155 - Fix make error curve seg params arg

Pull Request - State: closed - Opened by NickleDave almost 3 years ago

#154 - move example + schematic to top of bf-behavior figure

Pull Request - State: closed - Opened by NickleDave almost 3 years ago

#153 - add .ai and .png file of post-processing figure

Pull Request - State: closed - Opened by NickleDave almost 3 years ago

#152 - update fig files after adding updated canary csvs

Pull Request - State: closed - Opened by NickleDave almost 3 years ago

#151 - Rerun canary error vak040b5

Pull Request - State: closed - Opened by NickleDave almost 3 years ago

#149 - Add spect to bf behav fig

Pull Request - State: closed - Opened by NickleDave almost 3 years ago

#148 - Make article eval add data lineage metadata

Pull Request - State: closed - Opened by NickleDave almost 3 years ago

#147 - Update annotation fig panel numbering

Pull Request - State: closed - Opened by yardencsGitHub almost 3 years ago - 1 comment

#146 - perform statistical test on SVM v TweetyNet accuracy at largest data point

Issue - State: closed - Opened by NickleDave almost 3 years ago - 4 comments
Labels: wontfix, experiment, writing/paper

#145 - modify first annotation figure as discussed

Issue - State: closed - Opened by NickleDave almost 3 years ago - 2 comments
Labels: figure, writing/paper

#144 - make sure source data csv files include data lineage / metadata

Issue - State: closed - Opened by NickleDave almost 3 years ago - 1 comment

#140 - add "representative examples" to results figures

Issue - State: closed - Opened by NickleDave almost 3 years ago - 3 comments
Labels: figure, writing/paper

#139 - recompute syllable error rate for canary experiments

Issue - State: closed - Opened by NickleDave almost 3 years ago - 1 comment

#132 - 3.2 better integration with parallel work

Issue - State: closed - Opened by NickleDave over 3 years ago - 1 comment
Labels: writing/paper, essential-revision

#131 - Add hvc expt scripts + results + figure

Pull Request - State: closed - Opened by NickleDave over 3 years ago - 5 comments

#130 - test # of features (maps) + filter sizes for BFs

Issue - State: closed - Opened by NickleDave over 3 years ago - 1 comment
Labels: experiment, minor-point-revision

#108 - plot training histories for different hidden size models

Issue - State: closed - Opened by NickleDave over 3 years ago - 1 comment

#106 - fix + test canary npz files

Issue - State: closed - Opened by NickleDave over 3 years ago - 2 comments

#104 - change run_eval script so it can run without eval config files

Issue - State: closed - Opened by NickleDave over 3 years ago - 1 comment

#101 - add language in intro to emphasize problems resulting from segmentation

Issue - State: closed - Opened by NickleDave over 3 years ago - 2 comments
Labels: writing/paper, essential-revision

#99 - rewrite title/abstract to emphasize end-to-end segmentation free model

Issue - State: closed - Opened by NickleDave over 3 years ago - 1 comment
Labels: writing/paper

#93 - rerun summary data results scripts after final re-factoring

Issue - State: closed - Opened by NickleDave over 3 years ago - 1 comment
Labels: wontfix, experiment, essential-revision

#78 - 10. relationship to the issue of potential under/overfitting is not

Issue - State: closed - Opened by NickleDave over 3 years ago - 2 comments
Labels: writing/paper, minor-point-revision

#74 - clarify in methods we use "concatenate" method with BiLSTM output

Issue - State: closed - Opened by NickleDave over 3 years ago - 1 comment
Labels: writing/paper

#72 - 1.4 discuss choice of bin size

Issue - State: closed - Opened by NickleDave over 3 years ago - 3 comments
Labels: writing/paper, essential-revision

#69 - 1.4 Relative influence of sequential versus local features

Issue - State: closed - Opened by NickleDave over 3 years ago - 3 comments
Labels: experiment, writing/paper, essential-revision

#66 - 1.2a performance comparison to other potential types of pooling that justifies the choice

Issue - State: closed - Opened by NickleDave over 3 years ago - 4 comments
Labels: experiment, essential-revision

#65 - 1.2a add details regarding choice of pooling operation

Issue - State: closed - Opened by NickleDave over 3 years ago - 5 comments
Labels: writing/paper, essential-revision