Ecosyste.ms: Issues
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GitHub / yarden/miso issues and pull requests
#51 - `miso` error: "Import: unable to open X server `' @ import.c/ImportImageCommand/359" ...
Issue -
State: open - Opened by olgabot about 11 years ago
- 1 comment
#50 - Update documentation for using `miso` instead of `run_events_analysis.py` and friends
Issue -
State: closed - Opened by olgabot about 11 years ago
- 1 comment
#49 - hi yarden
Issue -
State: closed - Opened by charlesylin over 11 years ago
- 1 comment
#48 - Fix `miso_zip.py` for Ensembl style chromosomes
Issue -
State: open - Opened by yarden over 11 years ago
#47 - Add option that disables parent jobs from waiting on children jobs
Issue -
State: open - Opened by yarden over 11 years ago
#46 - Difficulty with malloc error
Issue -
State: open - Opened by rahulcdeo over 11 years ago
- 4 comments
#45 - Handle biological replicates automatically
Issue -
State: open - Opened by roryk over 11 years ago
- 4 comments
#44 - Add note on how to install python packages
Issue -
State: closed - Opened by yarden over 11 years ago
Labels: Installation
#43 - Handle BAM files with unaligned reads
Issue -
State: closed - Opened by yarden over 11 years ago
#42 - Implement --lazy for MAP estimate
Issue -
State: open - Opened by yarden over 11 years ago
#41 - Add --min-junctions argument to Sashimi plot
Issue -
State: closed - Opened by yarden over 11 years ago
Labels: sashimi_plot
#40 - Add color schemes to sashimi_plot
Issue -
State: open - Opened by yarden over 11 years ago
Labels: sashimi_plot
#39 - Fix up RPKM labels and align Psi tracks
Issue -
State: open - Opened by yarden over 11 years ago
Labels: sashimi_plot
#38 - Switch to Ryan Dale's gffutils
Issue -
State: open - Opened by yarden over 11 years ago
Labels: GFF
#37 - Reorganize GFF annotations, add new ones
Issue -
State: open - Opened by yarden over 11 years ago
Labels: GFF, Annotation
#36 - Sanitize and annotate GFF files
Issue -
State: open - Opened by yarden over 11 years ago
Labels: GFF, Annotation
#35 - Allow mixed iterations number comparisons
Issue -
State: open - Opened by yarden over 11 years ago
#34 - Convert all parsing from GFF3 to GTF
Issue -
State: open - Opened by yarden over 11 years ago
#33 - Detecting low or unrepresented transcripts
Issue -
State: closed - Opened by alig99 over 11 years ago
- 6 comments
#32 - Can Miso compare more than one mutant with a Wild type
Issue -
State: closed - Opened by alig99 over 11 years ago
- 1 comment
#31 - misopy not finding paired mates from Tophat Bam
Issue -
State: closed - Opened by alig99 over 11 years ago
- 3 comments
#30 - Eliminate delta posteriors output
Issue -
State: closed - Opened by yarden over 11 years ago
#29 - Eliminate all scipy code from code base
Issue -
State: open - Opened by yarden over 11 years ago
#28 - Check for presence of BAM index
Issue -
State: closed - Opened by yarden almost 12 years ago
#27 - BAM versus GFF header diagnostic tool
Issue -
State: closed - Opened by yarden almost 12 years ago
#26 - Create compressed output for MISO
Issue -
State: closed - Opened by yarden almost 12 years ago
- 1 comment
#25 - Add proper handling of "five_prime_utr" and "three_prime_utr" to GFF parser
Issue -
State: closed - Opened by yarden almost 12 years ago
#24 - Pre-filter reads (with bedtoools) to select events to run on
Issue -
State: closed - Opened by yarden almost 12 years ago
#23 - Make MISO output a list of job IDs when using "--use-cluster"
Issue -
State: open - Opened by yarden about 12 years ago
#22 - added support for virtualenv based installs
Pull Request -
State: open - Opened by mbreese about 12 years ago
- 1 comment
#21 - SGE/virtualenv compatability fixes, fixes to sashimi_plot for headless mode
Pull Request -
State: closed - Opened by ericsuh over 12 years ago
#20 - Fixed permissions issue with SGE job submission script
Pull Request -
State: closed - Opened by ericsuh over 12 years ago
- 2 comments
#19 - Replicate on samples
Issue -
State: closed - Opened by marcowanger over 12 years ago
- 2 comments
#18 - What mapper does MISO supports?
Issue -
State: closed - Opened by marcowanger over 12 years ago
- 6 comments
#17 - Sashimi plot Error: need --output-dir
Issue -
State: closed - Opened by marcowanger over 12 years ago
- 3 comments
#16 - Better CIGAR string support
Issue -
State: closed - Opened by gaborcsardi about 13 years ago
- 1 comment
#15 - BAM reader mixes up the TLEN field
Issue -
State: open - Opened by gaborcsardi about 13 years ago
#13 - More flexible BAM reader
Issue -
State: open - Opened by gaborcsardi about 13 years ago
- 1 comment
#12 - Variable read length
Issue -
State: open - Opened by gaborcsardi about 13 years ago
- 3 comments
#11 - Calculate fragment length from the data
Issue -
State: closed - Opened by gaborcsardi about 13 years ago
#10 - Some framework to test the Python package
Issue -
State: closed - Opened by gaborcsardi about 13 years ago
- 1 comment
#9 - Filtering function
Issue -
State: open - Opened by gaborcsardi about 13 years ago
#8 - Run MCMC until convergence, instead of a fixed number of steps
Issue -
State: closed - Opened by gaborcsardi about 13 years ago
- 2 comments
#7 - Order the GFF file, don't assume it was ordered, in the C code.
Issue -
State: closed - Opened by gaborcsardi about 13 years ago
- 1 comment
#6 - Test Python RNG in the C code.
Issue -
State: open - Opened by gaborcsardi about 13 years ago
#5 - Support overhang length in the C code.
Issue -
State: closed - Opened by gaborcsardi about 13 years ago
- 2 comments
#4 - Use fragment length correctly in the C solver.
Issue -
State: closed - Opened by gaborcsardi about 13 years ago
- 1 comment
#3 - Convert GFF to Python object.
Issue -
State: closed - Opened by gaborcsardi about 13 years ago
- 3 comments
#2 - "python" to sys.executable
Pull Request -
State: closed - Opened by cassj about 13 years ago
- 1 comment
#1 - added SGE array support
Pull Request -
State: closed - Opened by mlovci about 13 years ago