Ecosyste.ms: Issues
An open API service for providing issue and pull request metadata for open source projects.
GitHub / yarden/miso issues and pull requests
#151 - RuntimeWarning: Long {deleted, inserted} alignment
Issue -
State: open - Opened by jma1991 about 1 month ago
#150 - How to determine that a variable clipping event is a difference variable clipping event?
Issue -
State: open - Opened by happypiggyzjx 2 months ago
#149 - Error on Smart-seq paired-end data
Issue -
State: open - Opened by HZT55 5 months ago
#148 - Misopy didn't work with pickle and gave an error on the file Gene.py
Issue -
State: open - Opened by mlcsmits 6 months ago
#147 - Installing and running miso
Issue -
State: open - Opened by Oliverfeudj over 1 year ago
- 2 comments
#146 - install error and plot error
Issue -
State: open - Opened by jingydz over 1 year ago
#145 - Update all the dead genes.mit.edu links in the documentation page
Pull Request -
State: open - Opened by KidElectric almost 2 years ago
#144 - different maximum values of y-axis for different samples in one plot
Issue -
State: closed - Opened by Seanduu almost 2 years ago
#143 - Alternative Splicing Events annotations download link is erro
Issue -
State: open - Opened by ChristopherLeeZG about 3 years ago
- 2 comments
#142 - ValueError: too many values to unpack
Issue -
State: open - Opened by husamia over 3 years ago
#141 - which part should I modify?
Issue -
State: open - Opened by weifei888 almost 4 years ago
#140 - index_gff killed with no explanation
Issue -
State: open - Opened by husamia over 4 years ago
#139 - annotation file links not working
Issue -
State: closed - Opened by KunFang93 over 4 years ago
- 1 comment
#138 - Update sashimi.rst
Pull Request -
State: open - Opened by jrobinso about 5 years ago
#137 - No events captured during compare differential isoforms
Issue -
State: open - Opened by Sealzad about 5 years ago
#136 - import pysplicing
Issue -
State: open - Opened by MurliNair over 5 years ago
- 5 comments
#135 - Only works with samtools <= 1.2
Issue -
State: open - Opened by pcarbo over 5 years ago
#134 - Unstable running results.
Issue -
State: open - Opened by tangxj98 over 5 years ago
#133 - ValueError: numpy.dtype has the wrong size, try recompiling. Expected 88, got 96
Issue -
State: open - Opened by sneha100895 over 5 years ago
- 1 comment
#132 - RuntimeWarning: Long deleted alignment at pysplicing/src/solve.c:281
Issue -
State: open - Opened by zhengjiantao over 5 years ago
- 1 comment
#131 - RuntimeWarning
Issue -
State: closed - Opened by zhengjiantao over 5 years ago
#130 - About testing error
Issue -
State: open - Opened by zhengjiantao almost 6 years ago
- 1 comment
#129 - sam_utils.py problem
Issue -
State: open - Opened by obenno almost 6 years ago
#128 - Installation error: setting file does not exist
Issue -
State: open - Opened by giuseppedelnapalle almost 6 years ago
#127 - The Python Apocalypse leads to Documentation Bug
Issue -
State: open - Opened by lachlansimpson about 6 years ago
#126 - Queries related to Bayes factor, Exon Co-ordinates
Issue -
State: open - Opened by sarath-omics about 6 years ago
#125 - How to get SAM file?
Issue -
State: open - Opened by werhoog about 6 years ago
#124 - version 0.5.4 vs 0.5.2
Issue -
State: open - Opened by mcbenkface about 6 years ago
- 1 comment
#123 - Alternative Splicing Events annotations for GRCh38.
Issue -
State: open - Opened by edkonyakhina about 6 years ago
- 3 comments
#122 - MISO Output error
Issue -
State: open - Opened by ibmuller about 6 years ago
- 1 comment
#121 - Fix custom plot label option with filenames
Pull Request -
State: open - Opened by trevortknguyen over 6 years ago
#120 - how to interpret the miso_posterior_mean
Issue -
State: open - Opened by yiyimanew over 6 years ago
#119 - pip install issues
Issue -
State: open - Opened by fu over 6 years ago
#118 - Problems with mpl_toolkits.axes_grid
Issue -
State: open - Opened by pedropenzuti over 6 years ago
- 1 comment
#117 - IndexError: too many indices for array
Issue -
State: open - Opened by limeng12 over 6 years ago
- 4 comments
#116 - Bug fix for sashimi_plot with --plot-label option
Issue -
State: open - Opened by tdanhorn over 6 years ago
- 2 comments
#115 - Error generating custom exon-centric annotations
Issue -
State: closed - Opened by dejonggr almost 7 years ago
#114 - sashimi_plot with index_gff --compressed-id parameter
Issue -
State: open - Opened by genetalks-fred almost 7 years ago
#113 - Fixed crashing on alignment files without sequence data
Pull Request -
State: open - Opened by romansloutsky about 7 years ago
- 1 comment
#112 - check_gff_and_bam() fails when BAM file does not contain read sequences
Issue -
State: open - Opened by romansloutsky about 7 years ago
#111 - fixing samtools sort output
Pull Request -
State: open - Opened by baileyglen about 7 years ago
- 2 comments
#110 - Download link does not work
Issue -
State: closed - Opened by akthoma about 7 years ago
- 1 comment
#109 - summarize_miso error
Issue -
State: closed - Opened by wxzheng001 about 7 years ago
#108 - Python.h does not exist on pip install misopy
Issue -
State: open - Opened by AMChalkie about 7 years ago
- 2 comments
#107 - Can't use the most recent version of samtools
Issue -
State: open - Opened by MITiGEM2017 about 7 years ago
- 2 comments
#106 - Colons in job file name causing problems with SGE qsub
Issue -
State: open - Opened by sepidehparhami about 7 years ago
- 1 comment
#105 - Issue parsing queue job id
Issue -
State: open - Opened by sepidehparhami about 7 years ago
- 1 comment
#104 - settings.txt does not exist
Issue -
State: open - Opened by royfrancis about 7 years ago
- 5 comments
#103 - Bug in credible_intervals.py
Issue -
State: closed - Opened by jano15 over 7 years ago
- 5 comments
#102 - index_gff take very long time
Issue -
State: closed - Opened by jano15 over 7 years ago
#101 - Extraction of splicing events from user speficied gene annotation (gtf or gff)
Issue -
State: closed - Opened by akesarwani over 7 years ago
- 1 comment
#100 - MISO, new update ?
Issue -
State: open - Opened by lmanchon over 7 years ago
#99 - Update sashimi.rst
Pull Request -
State: open - Opened by kerkomen over 7 years ago
#98 - IndexError when summarizing and comparing MISO results
Issue -
State: closed - Opened by althornt over 7 years ago
- 8 comments
#97 - Status of conda package?
Issue -
State: open - Opened by holtgrewe over 7 years ago
- 2 comments
#96 - Batch-logs file not being created
Issue -
State: open - Opened by hershbc over 7 years ago
- 2 comments
#95 - Error: need --output-dir to compute Psi values.
Issue -
State: closed - Opened by pillailab almost 8 years ago
- 1 comment
#94 - Variable Read Length
Issue -
State: open - Opened by dlukacso almost 8 years ago
#93 - TypeError
Issue -
State: open - Opened by lpipes almost 8 years ago
#92 - Best-guessing insert size and stddev using paired-end data versus running miso single ended
Issue -
State: open - Opened by fpbarthel about 8 years ago
- 2 comments
#91 - MISO test run failed !
Issue -
State: open - Opened by ya73 about 8 years ago
- 5 comments
#90 - Parse command string
Pull Request -
State: open - Opened by dlsrnsi about 8 years ago
- 1 comment
#89 - All isoforms shorter than read length 150,always skipping
Issue -
State: closed - Opened by john321123 about 8 years ago
#88 - Slurm support
Pull Request -
State: open - Opened by aaronk over 8 years ago
- 1 comment
#87 - Adjust Max y-axis for sashimi_plot
Issue -
State: open - Opened by cfbuenabadn over 8 years ago
#86 - Slurm support
Issue -
State: open - Opened by aaronk over 8 years ago
- 20 comments
#85 - Update setup.py
Pull Request -
State: closed - Opened by aaronk over 8 years ago
- 5 comments
#84 - How are indels, soft-clipping in CIGAR handled? Affected by read length?
Issue -
State: open - Opened by SolKatzman over 8 years ago
#83 - Compiling fastmiso on mac (can't find 'miso' / 'index_gff' / 'sashami_plot' executables)
Issue -
State: closed - Opened by cwarden45 over 8 years ago
- 1 comment
#82 - strand_rule error
Issue -
State: closed - Opened by dauss75 over 8 years ago
- 1 comment
#81 - Does the insert length mean fragment length?
Issue -
State: closed - Opened by huangyh09 over 8 years ago
- 2 comments
#80 - Issue with psi values in miso files
Issue -
State: open - Opened by ryanabo almost 9 years ago
- 2 comments
#79 - Fix misnamed logger variable
Pull Request -
State: closed - Opened by jrbotros about 9 years ago
- 1 comment
#78 - fix import statement setup.py, required because entry_points is used
Pull Request -
State: closed - Opened by boegel over 9 years ago
- 6 comments
#77 - Pairedbug
Pull Request -
State: closed - Opened by gaborcsardi over 9 years ago
- 1 comment
#76 - unpack miso output for sashimi_plot
Issue -
State: open - Opened by pengchy over 9 years ago
- 8 comments
#75 - running multiple miso jobs ( one per sample ) independently using an index, fails as shelves are not built for concurrent reads
Issue -
State: open - Opened by xshah over 9 years ago
- 9 comments
#74 - changelog
Issue -
State: closed - Opened by olgabot over 9 years ago
- 1 comment
#73 - Use Travis CI
Issue -
State: closed - Opened by yarden over 9 years ago
- 7 comments
#72 - License unclear
Issue -
State: closed - Opened by rekado over 9 years ago
- 1 comment
#71 - building with python 3 fails
Issue -
State: closed - Opened by rekado over 9 years ago
- 2 comments
#70 - spawned python processes
Issue -
State: open - Opened by ink1 almost 10 years ago
- 1 comment
#69 - Cannot load misopy after installing to staged python 2.7 location using pip
Issue -
State: closed - Opened by kotoroshinoto almost 10 years ago
- 2 comments
#68 - Error on provided drosophila annotations
Issue -
State: open - Opened by ohadgl almost 10 years ago
#67 - MISO on MAC 10.9: malloc error
Issue -
State: open - Opened by Jerry-Zhao over 10 years ago
- 5 comments
#66 - run_SGEarray_cluster() throws error in SGE-6.0u8. Possibly qsub priority bug.
Issue -
State: open - Opened by jakeyeung over 10 years ago
#65 - annotation file
Issue -
State: open - Opened by nickytong over 10 years ago
#64 - log_score = nan?
Issue -
State: open - Opened by olgabot over 10 years ago
- 8 comments
#63 - Reproducibility of Miso results
Issue -
State: open - Opened by robcarr over 10 years ago
- 1 comment
#62 - Reads thrown out?
Issue -
State: open - Opened by olgabot over 10 years ago
- 5 comments
#61 - Creating new AS annotation
Issue -
State: closed - Opened by ramaniak almost 11 years ago
- 1 comment
#60 - Properly paired on tophat output
Issue -
State: closed - Opened by frontal almost 11 years ago
- 3 comments
#59 - Add python shebang to the top
Pull Request -
State: open - Opened by roryk almost 11 years ago
- 10 comments
#58 - Creating my own gff3 file
Issue -
State: closed - Opened by frontal almost 11 years ago
- 1 comment
#57 - No query here. solved by myselft :) can be deleted
Issue -
State: closed - Opened by frontal almost 11 years ago
#56 - Problem with assigned_counts
Issue -
State: closed - Opened by mnsmar almost 11 years ago
- 3 comments
#55 - GFF IDs don't correspond to exon start/stops
Issue -
State: open - Opened by olgabot about 11 years ago
- 2 comments
#54 - Add `which_miso`
Issue -
State: open - Opened by yarden about 11 years ago
#53 - Error checking for tagBam
Issue -
State: open - Opened by yarden about 11 years ago
#52 - Fix Python version path issue
Issue -
State: closed - Opened by yarden about 11 years ago