Ecosyste.ms: Issues

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GitHub / yapic/yapic_io issues and pull requests

#37 - set default batch size

Issue - State: closed - Opened by pranjaldhole almost 3 years ago - 3 comments
Labels: bug

#36 - if batch size is greater than number of labels, all labels sampled

Pull Request - State: closed - Opened by pranjaldhole about 3 years ago - 1 comment

#35 - batch size as an input variable

Pull Request - State: closed - Opened by pranjaldhole about 3 years ago - 1 comment

#34 - Custom selection of batch size

Issue - State: closed - Opened by pranjaldhole about 3 years ago
Labels: enhancement

#33 - tox based testing

Pull Request - State: closed - Opened by pranjaldhole over 3 years ago

#32 - pypi deployment on push to release branch

Pull Request - State: closed - Opened by pranjaldhole over 3 years ago - 1 comment

#31 - effective_slices() bug fix

Pull Request - State: closed - Opened by dlesmesl over 3 years ago - 1 comment

#30 - Custom tile size as input argument

Issue - State: closed - Opened by pranjaldhole over 3 years ago - 1 comment
Labels: enhancement

#29 - compressed labels readable by NapariConnector

Pull Request - State: closed - Opened by pranjaldhole over 3 years ago

#28 - NapariConnector read compressed labels

Issue - State: closed - Opened by pranjaldhole over 3 years ago

#27 - Can't locate attribute: 'compressed'

Issue - State: closed - Opened by pranjaldhole over 3 years ago - 1 comment
Labels: bug

#26 - updating napari connector to new hdf5

Pull Request - State: closed - Opened by dlesmesl over 3 years ago

#25 - Stack images efficiency

Pull Request - State: closed - Opened by dlesmesl over 3 years ago - 1 comment

#24 - Windows build

Pull Request - State: closed - Opened by cmohl2013 over 3 years ago - 8 comments

#23 - Add windows build CI workflow

Issue - State: closed - Opened by cmohl2013 over 3 years ago - 1 comment

#22 - Tifffile implementation

Pull Request - State: closed - Opened by dlesmesl over 3 years ago - 3 comments

#21 - napariConnector can handle tiff stacks

Pull Request - State: closed - Opened by pranjaldhole almost 4 years ago

#20 - bigtiff memmap

Issue - State: closed - Opened by Mirindi95 almost 4 years ago - 2 comments

#19 - Napari Connector class

Pull Request - State: closed - Opened by dlesmesl almost 4 years ago - 1 comment

#18 - NapariConnector class

Issue - State: closed - Opened by pranjaldhole about 4 years ago - 1 comment
Labels: Todo

#17 - Log level should be changed to "debug" for displaying number of trials for fetching training data

Issue - State: open - Opened by cmohl2013 over 4 years ago
Labels: enhancement, good first issue

#16 - fixed issue #4 and added global auto normalization features

Pull Request - State: closed - Opened by cmohl2013 over 4 years ago - 1 comment

#14 - added support for cellvoyager datasets

Pull Request - State: closed - Opened by cmohl2013 over 4 years ago - 1 comment

#12 - added command line outputs, added tests for multichannel images and normalization

Pull Request - State: closed - Opened by cmohl2013 over 4 years ago - 1 comment

#11 - hardik doshi: removed numpy warnings, fixes isuue #3

Pull Request - State: closed - Opened by cmohl2013 almost 5 years ago

#10 - solves #6 #8 #9 label mapping bug + multichannel export + transformation test fixes

Pull Request - State: closed - Opened by cmohl2013 almost 5 years ago - 1 comment

#9 - save probability maps as multichannel tif

Issue - State: closed - Opened by cmohl2013 almost 5 years ago
Labels: enhancement

#8 - Labels are not retrieved correctly with ilastik version 1.3.3

Issue - State: closed - Opened by cmohl2013 almost 5 years ago
Labels: bug

#7 - made a test fail for demo reason

Pull Request - State: closed - Opened by cmohl2013 almost 5 years ago - 1 comment

#6 - Some tests fail because of integer <-> float mismatch of numpy arrray values

Issue - State: closed - Opened by cmohl2013 almost 5 years ago
Labels: good first issue, testing

#5 - ilastik connector problem with pixel files in subfolder structure

Issue - State: open - Opened by cmohl2013 over 5 years ago
Labels: bug

#3 - Remove numpy future warning message

Issue - State: closed - Opened by cmohl2013 over 5 years ago
Labels: good first issue

#2 - Support reading pixel data from ilp file directly in IlastikConnector

Issue - State: open - Opened by cmohl2013 over 5 years ago
Labels: enhancement

#1 - added auto deployment

Pull Request - State: closed - Opened by cmohl2013 over 5 years ago