yapic/yapic issues and pull requests

#65 - Update index.md

Pull Request - State: open - Opened by iraklis10 3 months ago

#64 - feature request - image scaling

Issue - State: open - Opened by aryehw about 2 years ago

#63 - setting steps/epochin train

Issue - State: open - Opened by aryehw about 2 years ago - 1 comment

#62 - val_accuracy > 1?

Issue - State: open - Opened by aryehw about 2 years ago

#61 - intermediate results

Issue - State: open - Opened by aryehw about 2 years ago - 1 comment
Labels: enhancement

#60 - changed installation instructions on website, fixes #58

Pull Request - State: closed - Opened by cmohl2013 about 2 years ago

#59 - warning generatd by yapic train

Issue - State: open - Opened by aryehw about 2 years ago

#58 - Strange results images

Issue - State: closed - Opened by aryehw about 2 years ago - 7 comments

#57 - added leaves example end2end training test

Pull Request - State: closed - Opened by cmohl2013 about 2 years ago - 1 comment

#56 - problem running leaves example

Issue - State: closed - Opened by aryehw over 2 years ago - 18 comments

#55 - napari-hdf5-labels-io plugin with new YAPiC version (0.4.14) gives error after saving and uploading the labels.h5 file

Issue - State: open - Opened by amgfernandes over 2 years ago - 1 comment

#54 - Memory-mapping not working for tifffile memmap

Issue - State: open - Opened by pranjaldhole over 2 years ago - 7 comments
Labels: bug

#53 - batch_size for prediction batch is handled if not defined

Pull Request - State: closed - Opened by pranjaldhole over 2 years ago

#52 - batch_size handling for prediction batch

Issue - State: closed - Opened by pranjaldhole over 2 years ago

#51 - batch size as an input argument to yapic training

Pull Request - State: closed - Opened by pranjaldhole almost 3 years ago

#50 - GPU memory management

Issue - State: closed - Opened by pranjaldhole almost 3 years ago - 1 comment
Labels: bug

#49 - Change demo: Ilastik to napari

Issue - State: open - Opened by pranjaldhole almost 3 years ago
Labels: documentation

#48 - Currently uses tensorflow 2.4.3 due to Pyilastik

Issue - State: closed - Opened by pranjaldhole almost 3 years ago - 2 comments

#47 - AssertionError: no filenames for pixel images found

Issue - State: open - Opened by PoulomiA almost 3 years ago - 1 comment

#46 - pypi deployment on release branch

Pull Request - State: closed - Opened by pranjaldhole almost 3 years ago

#45 - using latest version of tensorflow as dependency

Pull Request - State: closed - Opened by pranjaldhole almost 3 years ago - 1 comment

#44 - tensorflow will be installed automatically as one of the requirements

Pull Request - State: closed - Opened by pranjaldhole about 3 years ago - 1 comment

#43 - Simplify YAPiC installation steps

Issue - State: closed - Opened by dlesmesl about 3 years ago
Labels: enhancement, documentation

#42 - Custom tile size as input argument

Issue - State: open - Opened by pranjaldhole about 3 years ago - 1 comment
Labels: enhancement

#41 - Multi-stack image - model channels mismatch with image channels

Issue - State: closed - Opened by pranjaldhole over 3 years ago - 1 comment
Labels: bug

#40 - Add support for Tensorflow 2.5

Issue - State: closed - Opened by cmohl2013 over 3 years ago
Labels: enhancement

#39 - Add tutorial on website for labeling and prediction with Napari

Issue - State: open - Opened by cmohl2013 over 3 years ago
Labels: documentation

#38 - Windows support

Issue - State: closed - Opened by pranjaldhole over 3 years ago - 15 comments
Labels: enhancement

#37 - Memory efficient reading of sparsely labeled image stacks

Issue - State: open - Opened by pranjaldhole over 3 years ago
Labels: enhancement

#36 - package version in separate version.py file

Pull Request - State: closed - Opened by pranjaldhole over 3 years ago - 1 comment

#35 - Consider adding tqdm for the overall progress of the pipeline

Issue - State: closed - Opened by amgfernandes over 3 years ago
Labels: enhancement, Todo

#34 - version update

Pull Request - State: closed - Opened by pranjaldhole over 3 years ago

#33 - label map storage

Pull Request - State: closed - Opened by dlesmesl over 3 years ago - 1 comment

#32 - handling deployment with travis

Pull Request - State: closed - Opened by pranjaldhole over 3 years ago

#31 - edited pypi auto deploy config in .travis.yml

Pull Request - State: closed - Opened by cmohl2013 over 3 years ago

#30 - logo moved to docs

Pull Request - State: closed - Opened by pranjaldhole over 3 years ago

#29 - add new logo

Pull Request - State: closed - Opened by amgfernandes over 3 years ago - 4 comments

#28 - Integrate NapariConnector with Session class

Issue - State: closed - Opened by pranjaldhole almost 4 years ago - 1 comment
Labels: enhancement, Todo

#27 - Corrected typos

Pull Request - State: closed - Opened by erjel almost 4 years ago - 1 comment

#26 - fixes #25 include template files in python package

Pull Request - State: closed - Opened by cmohl2013 almost 4 years ago

#25 - missing template data when installing yapic with pip

Issue - State: closed - Opened by cmohl2013 almost 4 years ago
Labels: bug

#24 - modified travis config to fix pypi deploy bug

Pull Request - State: closed - Opened by cmohl2013 almost 4 years ago - 1 comment

#23 - included non code files (macros and xml templates) necessary for deepimagejBundledModel

Pull Request - State: closed - Opened by cmohl2013 almost 4 years ago

#22 - TensorFlow versions

Issue - State: open - Opened by lacan almost 4 years ago - 2 comments

#21 - console output during training

Issue - State: closed - Opened by lacan almost 4 years ago - 2 comments
Labels: enhancement

#20 - Setupdate

Pull Request - State: closed - Opened by cmohl2013 almost 4 years ago

#19 - removed line breaks from documentation website

Pull Request - State: closed - Opened by cmohl2013 almost 4 years ago

#18 - Deepimagej

Pull Request - State: closed - Opened by cmohl2013 almost 4 years ago - 1 comment

#17 - Add yapic to Open Neuroscience

Issue - State: closed - Opened by amchagas almost 4 years ago - 1 comment
Labels: question

#16 - Yapic Bug

Issue - State: open - Opened by aaparvat about 4 years ago - 2 comments

#15 - Exception in train unet

Issue - State: closed - Opened by asmagen over 4 years ago - 2 comments

#14 - add feature to deploy models to DeepImageJ

Issue - State: closed - Opened by cmohl2013 over 4 years ago - 1 comment
Labels: enhancement

#13 - sync

Pull Request - State: closed - Opened by cmohl2013 over 4 years ago

#12 - version 1.0.1

Pull Request - State: closed - Opened by cmohl2013 over 4 years ago

#11 - #10 support for new keras version

Pull Request - State: closed - Opened by cmohl2013 over 4 years ago - 1 comment

#10 - tests fail with up-to-date keras versions

Issue - State: closed - Opened by cmohl2013 over 4 years ago
Labels: bug

#9 - Keras version conflict with tensorflow-gpu

Issue - State: closed - Opened by cmohl2013 almost 5 years ago - 2 comments

#8 - Label Import Issue

Issue - State: closed - Opened by trasse almost 5 years ago - 3 comments
Labels: bug, test needed

#7 - fixed #6 logger import in session.py

Pull Request - State: closed - Opened by cmohl2013 about 5 years ago