Ecosyste.ms: Issues
An open API service for providing issue and pull request metadata for open source projects.
GitHub / xin-huang/dadi-cli issues and pull requests
#121 - Update and implement --pdf-file flag
Pull Request -
State: open - Opened by tjstruck 9 days ago
#120 - Neg bounds update
Pull Request -
State: closed - Opened by tjstruck about 1 month ago
#119 - Delete tests/example_data/LowPass-files/cov.fs.coverage.pickle
Pull Request -
State: closed - Opened by tjstruck about 2 months ago
#118 - Small LowPass update
Pull Request -
State: closed - Opened by tjstruck about 2 months ago
#117 - Bugfix for unit tests
Pull Request -
State: closed - Opened by tjstruck about 2 months ago
#116 - Integrate dadi LowPass functions and some streamlining code
Pull Request -
State: closed - Opened by tjstruck about 2 months ago
#115 - TypeError was given when using GenerateCache
Issue -
State: closed - Opened by jyw-atgithub 4 months ago
- 7 comments
#114 - Remove --nomisid requirement for functions that use a dadi-cli inference output file
Issue -
State: open - Opened by tjstruck 4 months ago
Labels: enhancement
#113 - Update manual
Pull Request -
State: open - Opened by xin-huang 5 months ago
- 1 comment
#112 - Update dadi_cli/GenerateFs.py
Pull Request -
State: closed - Opened by xin-huang 5 months ago
#111 - Update GenerateFs for checking the AA INFO field when --polarized is …
Pull Request -
State: closed - Opened by xin-huang 5 months ago
- 1 comment
#110 - Update docstrings
Pull Request -
State: closed - Opened by xin-huang 5 months ago
#109 - Update Plot and Add --interactive option
Pull Request -
State: closed - Opened by xin-huang 5 months ago
- 1 comment
#108 - priority of --maxtime and --force-convergence
Issue -
State: open - Opened by QianXiaobo 5 months ago
- 1 comment
#108 - priority of --maxtime and --force-convergence
Issue -
State: open - Opened by QianXiaobo 5 months ago
- 1 comment
#107 - Update user guide
Issue -
State: open - Opened by xin-huang 6 months ago
#106 - Refactor parsers
Pull Request -
State: closed - Opened by xin-huang 6 months ago
- 1 comment
#105 - Check AA info in the input VCF file if `--polarized` is used
Issue -
State: closed - Opened by xin-huang 6 months ago
- 1 comment
#104 - Update docstrings and add type hint
Pull Request -
State: closed - Opened by xin-huang 6 months ago
- 1 comment
#103 - Update codecov
Pull Request -
State: closed - Opened by xin-huang 6 months ago
- 1 comment
#102 - Readme update
Pull Request -
State: closed - Opened by tjstruck 6 months ago
#101 - readthedocs update
Pull Request -
State: closed - Opened by tjstruck 6 months ago
#101 - readthedocs update
Pull Request -
State: closed - Opened by tjstruck 6 months ago
#100 - Readme update
Pull Request -
State: closed - Opened by tjstruck 6 months ago
#100 - Readme update
Pull Request -
State: closed - Opened by tjstruck 6 months ago
#99 - Remove stale branches
Issue -
State: open - Opened by xin-huang 6 months ago
#99 - Remove stale branches
Issue -
State: open - Opened by xin-huang 6 months ago
#98 - --check-convergence & --force-convergence
Issue -
State: open - Opened by QianXiaobo 7 months ago
- 2 comments
Labels: documentation
#97 - Add --interactive flag for Plot subcommand
Pull Request -
State: closed - Opened by tjstruck 8 months ago
- 2 comments
#96 - Replace `multiprocessing.Queue` with `Manager.Queue`
Issue -
State: open - Opened by xin-huang 8 months ago
Labels: enhancement
#95 - add an `--interactive` option to the `Plot` command
Issue -
State: open - Opened by xin-huang 8 months ago
- 6 comments
Labels: enhancement
#94 - Issue with dadi-cli and the Numerics.py script
Issue -
State: open - Opened by kchiou 9 months ago
- 1 comment
#93 - Plot3d
Pull Request -
State: closed - Opened by tjstruck 10 months ago
#92 - Update version in install file to 0.9.4
Pull Request -
State: closed - Opened by tjstruck 10 months ago
#91 - Add plot 3d comparison and warnings for unsupported sample sizes
Pull Request -
State: closed - Opened by tjstruck 10 months ago
- 1 comment
#91 - Add plot 3d comparison and warnings for unsupported sample sizes
Pull Request -
State: closed - Opened by tjstruck 10 months ago
- 1 comment
#90 - plot pdf blank/empty
Issue -
State: open - Opened by chapinkj 11 months ago
- 4 comments
#89 - Update StatDM/DFE
Pull Request -
State: closed - Opened by tjstruck about 1 year ago
- 1 comment
#88 - Moved message about updating dadi for 3D models
Pull Request -
State: closed - Opened by tjstruck about 1 year ago
- 1 comment
#88 - Moved message about updating dadi for 3D models
Pull Request -
State: closed - Opened by tjstruck about 1 year ago
- 1 comment
#87 - Update global opt and Models.py for portik changes
Pull Request -
State: closed - Opened by tjstruck about 1 year ago
- 1 comment
#87 - Update global opt and Models.py for portik changes
Pull Request -
State: closed - Opened by tjstruck about 1 year ago
- 1 comment
#86 - Add Portik 2017 and Out of Africa models for donni compatibility
Pull Request -
State: closed - Opened by tjstruck about 1 year ago
- 2 comments
#85 - Functionality for dadi-cli to automatically make the directories
Pull Request -
State: closed - Opened by tjstruck over 1 year ago
- 1 comment
#85 - Functionality for dadi-cli to automatically make the directories
Pull Request -
State: closed - Opened by tjstruck over 1 year ago
- 1 comment
#84 - Misc updates for dadi-cli
Pull Request -
State: closed - Opened by tjstruck over 1 year ago
- 1 comment
#84 - Misc updates for dadi-cli
Pull Request -
State: closed - Opened by tjstruck over 1 year ago
- 1 comment
#83 - Better support for negative parameter bounds
Pull Request -
State: closed - Opened by RyanGutenkunst over 1 year ago
- 1 comment
#83 - Better support for negative parameter bounds
Pull Request -
State: closed - Opened by RyanGutenkunst over 1 year ago
- 1 comment
#82 - BestFit boundary update and -env.yml file dependency change for Issues #79 #78
Pull Request -
State: closed - Opened by tjstruck over 1 year ago
- 1 comment
Labels: enhancement
#81 - README and run_README.py updates for convergence flag
Pull Request -
State: closed - Opened by tjstruck over 1 year ago
- 1 comment
#80 - Update plot.md
Pull Request -
State: closed - Opened by RyanGutenkunst over 1 year ago
#79 - Use bounds in BestFit
Issue -
State: closed - Opened by RyanGutenkunst over 1 year ago
- 2 comments
Labels: enhancement
#78 - Loosen dependency requirements
Issue -
State: closed - Opened by RyanGutenkunst over 1 year ago
- 3 comments
#77 - Convergence update
Pull Request -
State: closed - Opened by tjstruck over 1 year ago
- 1 comment
#76 - Readthedocs
Pull Request -
State: closed - Opened by xin-huang over 1 year ago
- 1 comment
#75 - Update plot
Pull Request -
State: closed - Opened by xin-huang over 1 year ago
- 1 comment
#74 - Terraform update
Pull Request -
State: closed - Opened by tjstruck over 1 year ago
- 1 comment
#73 - Remove email from dadi-cli
Pull Request -
State: closed - Opened by tjstruck over 1 year ago
- 1 comment
#72 - Snm fix for SimulateDM and GenerateCache
Pull Request -
State: closed - Opened by tjstruck over 1 year ago
- 1 comment
#71 - Update cloud-env.yml to install dadi-cli via conda-forge
Pull Request -
State: closed - Opened by tjstruck over 1 year ago
#70 - Readme update
Pull Request -
State: closed - Opened by tjstruck over 1 year ago
- 1 comment
#69 - Bugfix _top_opts unittest
Pull Request -
State: closed - Opened by tjstruck over 1 year ago
#68 - Update functions and tests for --bestfit-p0-file argument
Pull Request -
State: closed - Opened by tjstruck over 1 year ago
#67 - Terraform update
Pull Request -
State: closed - Opened by tjstruck over 1 year ago
- 1 comment
#66 - Add ability to download fs and model file from HTML link
Pull Request -
State: closed - Opened by tjstruck over 1 year ago
#65 - Update add_model_argument so --model not required for Plot
Pull Request -
State: closed - Opened by tjstruck over 1 year ago
- 1 comment
#64 - 1D DFE Plot Bugfix
Pull Request -
State: closed - Opened by tjstruck over 1 year ago
#63 - Plot subcommand updates and bugfixes
Pull Request -
State: closed - Opened by tjstruck over 1 year ago
- 1 comment
#62 - Bugfixes for SimulateFS and updates for cache grid points
Pull Request -
State: closed - Opened by tjstruck over 1 year ago
#61 - realSFS compatibility
Issue -
State: closed - Opened by bibionid over 1 year ago
- 9 comments
#60 - Email
Pull Request -
State: closed - Opened by tjstruck over 1 year ago
#59 - CLI returning ValueError
Issue -
State: closed - Opened by andrewkern over 1 year ago
- 5 comments
#58 - nlopt.RoundoffLimited error exception
Pull Request -
State: closed - Opened by tjstruck over 1 year ago
#57 - nlopt.RoundoffLimited: NLopt roundoff-limited
Issue -
State: closed - Opened by bibionid over 1 year ago
- 4 comments
#56 - Add pts_l_func usage for snm analysis
Pull Request -
State: closed - Opened by tjstruck over 1 year ago
#55 - Add fix to not require boundaries when fitting a simple standard neutral model
Pull Request -
State: closed - Opened by tjstruck over 1 year ago
- 1 comment
#54 - InferDM with snm_1d
Issue -
State: closed - Opened by bibionid over 1 year ago
- 6 comments
#53 - nlopt.RoundoffLimited: NLopt roundoff-limited warning
Issue -
State: closed - Opened by bibionid almost 2 years ago
- 2 comments
#52 - different proportions from gamma and lognormal distributions
Issue -
State: closed - Opened by xin-huang almost 2 years ago
- 12 comments
Labels: question
#51 - Update conda environments
Pull Request -
State: closed - Opened by xin-huang almost 2 years ago
#50 - Update ValueError string formating incase it causes issues with some …
Pull Request -
State: closed - Opened by tjstruck almost 2 years ago
#49 - Pytest
Pull Request -
State: closed - Opened by tjstruck almost 2 years ago
- 1 comment
#48 - removed fs_file variable and added support for uploading files in the…
Pull Request -
State: closed - Opened by sdavey almost 2 years ago
#47 - Fix bugs caused by GitHub merging
Pull Request -
State: closed - Opened by tjstruck almost 2 years ago
- 1 comment
#46 - Update tests
Pull Request -
State: closed - Opened by tjstruck almost 2 years ago
- 1 comment
#45 - Update tests
Pull Request -
State: closed - Opened by tjstruck almost 2 years ago
- 1 comment
#44 - Update main code for pytest branch
Pull Request -
State: closed - Opened by tjstruck almost 2 years ago
#43 - added support for auto running dadi-cli, added dadi-auto.tfvars for u…
Pull Request -
State: closed - Opened by sdavey almost 2 years ago
#42 - Add option to choose work queue port with --port, default 9123
Pull Request -
State: closed - Opened by tjstruck almost 2 years ago
#41 - Fix bug in test_GenerateCache
Pull Request -
State: closed - Opened by RyanGutenkunst about 2 years ago
- 1 comment
#40 - Add doctrings
Pull Request -
State: closed - Opened by xin-huang about 2 years ago
#39 - Robust tests of Work Queue functionality
Issue -
State: open - Opened by RyanGutenkunst about 2 years ago
#38 - Fix Work Queue InferDM and --optimizations
Pull Request -
State: closed - Opened by RyanGutenkunst about 2 years ago
- 1 comment
#37 - GPU support through Work Queue
Issue -
State: open - Opened by RyanGutenkunst about 2 years ago
Labels: enhancement
#36 - Terraform
Pull Request -
State: closed - Opened by sdavey about 2 years ago
#35 - Terraform
Pull Request -
State: closed - Opened by sdavey about 2 years ago
#34 - Updated cuda support
Pull Request -
State: closed - Opened by RyanGutenkunst about 2 years ago
#33 - Cuda
Pull Request -
State: closed - Opened by xin-huang about 2 years ago
- 1 comment
#32 - Revert "Cuda support"
Pull Request -
State: closed - Opened by xin-huang about 2 years ago