Ecosyste.ms: Issues

An open API service for providing issue and pull request metadata for open source projects.

GitHub / xia2/xia2 issues and pull requests

#831 - [pre-commit.ci] pre-commit autoupdate

Pull Request - State: closed - Opened by pre-commit-ci[bot] about 1 month ago

#830 - Update indexer test

Pull Request - State: closed - Opened by jbeilstenedmands 2 months ago

#829 - `STRONG_PIXEL` --> `SIGNAL_PIXEL`

Pull Request - State: open - Opened by dagewa 2 months ago - 1 comment

#828 - Tweak for multiplex PHIL attributes

Pull Request - State: closed - Opened by dagewa 2 months ago

#826 - xia2.ssx_reduce, use cosym option weights=count

Pull Request - State: closed - Opened by jbeilstenedmands 3 months ago

#825 - Fix xia2.setup on Windows

Pull Request - State: closed - Opened by dagewa 3 months ago

#824 - Resolve command paths and set UTF-8 mode for tests on Windows

Pull Request - State: closed - Opened by dagewa 3 months ago - 12 comments

#823 - Cluster name change

Pull Request - State: closed - Opened by amyjaynethompson 3 months ago

#821 - xia2.multiplex cosym failure when unit cell clustering only produces singletons.

Issue - State: open - Opened by jbeilstenedmands 3 months ago - 1 comment
Labels: bug

#820 - Switch to Python 3.10 as the minimum

Pull Request - State: closed - Opened by ndevenish 3 months ago

#818 - xia2/tests /regression/test_ssx.py on Windows

Issue - State: closed - Opened by bwithd 4 months ago - 1 comment

#817 - Migrate xia2 testing to Github Actions

Pull Request - State: closed - Opened by ndevenish 4 months ago

#816 - Remove --cmake default from CI build commands

Pull Request - State: closed - Opened by jbeilstenedmands 4 months ago - 1 comment

#815 - [pre-commit.ci] pre-commit autoupdate

Pull Request - State: closed - Opened by pre-commit-ci[bot] 4 months ago

#814 - Dimensionallity optimisation

Pull Request - State: closed - Opened by amyjaynethompson 4 months ago - 1 comment

#812 - DIALS 3.21.2

Pull Request - State: closed - Opened by DiamondLightSource-build-server 5 months ago

#811 - Loosen tolerances on XDS test

Pull Request - State: closed - Opened by ndevenish 5 months ago - 1 comment

#810 - [pre-commit.ci] pre-commit autoupdate

Pull Request - State: closed - Opened by pre-commit-ci[bot] 5 months ago - 1 comment

#809 - Use CMake bootstrap for xia2 CI

Pull Request - State: closed - Opened by ndevenish 6 months ago - 1 comment

#808 - [pre-commit.ci] pre-commit autoupdate

Pull Request - State: closed - Opened by pre-commit-ci[bot] 6 months ago - 1 comment

#807 - DIALS 3.21.1

Pull Request - State: closed - Opened by DiamondLightSource-build-server 6 months ago - 1 comment

#806 - Fix mypy warnings about invalid type declarations

Pull Request - State: closed - Opened by ndevenish 6 months ago - 1 comment

#805 - Fix parsing of fixed formats

Pull Request - State: closed - Opened by graeme-winter 6 months ago - 3 comments

#804 - Validate xia2 against new XDS BUILT=20240723

Issue - State: closed - Opened by graeme-winter 6 months ago - 3 comments

#803 - `image=` not working with hdf5 data on Windows

Issue - State: open - Opened by dagewa 6 months ago

#800 - DIALS 3.20.1

Pull Request - State: closed - Opened by DiamondLightSource-build-server 7 months ago - 1 comment
Labels: PR: merge conflicts

#799 - Convert merged MTZ export to use gemmi

Pull Request - State: closed - Opened by dagewa 7 months ago - 1 comment

#797 - FileNotFoundError: COLSPOT.LP

Issue - State: closed - Opened by wh277 8 months ago - 2 comments

#796 - Add beamstop/overload to xia2/dials run?

Issue - State: open - Opened by frmupe 8 months ago

#795 - Replace isort/flake8/black with ruff

Pull Request - State: closed - Opened by ndevenish 8 months ago

#794 - xia2.ssx_reduce: improve reliability of cosym indexing ambiguity resolution

Pull Request - State: closed - Opened by jbeilstenedmands 8 months ago - 1 comment

#793 - Merge in corr mat

Pull Request - State: closed - Opened by amyjaynethompson 8 months ago

#792 - Apply error model in ssx data reduction

Pull Request - State: closed - Opened by jbeilstenedmands 9 months ago - 1 comment

#789 - Multiplex batch fix

Pull Request - State: closed - Opened by amyjaynethompson 10 months ago

#788 - `image=` mode for non-zero-padded image numbers

Issue - State: open - Opened by dagewa 10 months ago

#787 - Recalculate batch offsets after cosym

Issue - State: closed - Opened by biochem-fan 10 months ago - 1 comment

#786 - Cosym tolerance tailoring

Pull Request - State: closed - Opened by amyjaynethompson 10 months ago

#785 - Fix recently introduced issue in #784

Pull Request - State: closed - Opened by jbeilstenedmands 10 months ago

#784 - Maintain batch order in xia2.ssx_reduce

Pull Request - State: closed - Opened by jbeilstenedmands 10 months ago

#783 - Multiplex selected clusters

Pull Request - State: closed - Opened by amyjaynethompson 11 months ago - 1 comment

#782 - Not running in Fedora 39

Issue - State: closed - Opened by mysecondnameisdanger 11 months ago - 2 comments

#781 - radiation damage series?

Issue - State: closed - Opened by mysecondnameisdanger 11 months ago - 1 comment

#780 - Use new dials.util.system.CPU_COUNT

Pull Request - State: closed - Opened by benjaminhwilliams 12 months ago - 2 comments

#779 - xia2.ssx allow use of sequences indexer in ssx_index

Pull Request - State: closed - Opened by jbeilstenedmands 12 months ago - 1 comment

#778 - Filter pandas Pyarrow deprecation warning in tests

Pull Request - State: closed - Opened by jbeilstenedmands 12 months ago - 1 comment

#777 - Fix Windows tests

Pull Request - State: closed - Opened by dagewa about 1 year ago - 8 comments

#776 - Update another xia2 multiplex test for cross platform stability

Pull Request - State: closed - Opened by jbeilstenedmands about 1 year ago - 1 comment

#775 - Make sure cc1/2 resolution fit is still extracted correctly.

Pull Request - State: closed - Opened by jbeilstenedmands about 1 year ago - 1 comment

#773 - Update multiplex test to be more stable.

Pull Request - State: closed - Opened by jbeilstenedmands about 1 year ago - 1 comment

#772 - Update multiplex test fixture

Pull Request - State: closed - Opened by jbeilstenedmands about 1 year ago

#769 - Update tests for ssx updates

Pull Request - State: closed - Opened by jbeilstenedmands about 1 year ago - 1 comment

#767 - Add run_cluster_identification=True/False option to xia2.cluster_analysis

Pull Request - State: closed - Opened by jbeilstenedmands over 1 year ago - 1 comment

#766 - Exit xia2.multiplex cleanly when given still-shot data

Pull Request - State: closed - Opened by jbeilstenedmands over 1 year ago - 1 comment

#765 - xia2.multiplex - fix batch offset issues

Pull Request - State: closed - Opened by jbeilstenedmands over 1 year ago - 1 comment

#764 - Cluster bug fix

Pull Request - State: closed - Opened by amyjaynethompson over 1 year ago - 1 comment

#763 - Add starting_geometry= option to xia2.ssx

Pull Request - State: closed - Opened by jbeilstenedmands over 1 year ago - 1 comment

#762 - Add option to filter on mean I/sigma in xia2.ssx_reduce

Pull Request - State: closed - Opened by jbeilstenedmands over 1 year ago - 2 comments

#761 - Restructure xia2.ssx_reduce for improved ambiguity resolution.

Pull Request - State: closed - Opened by jbeilstenedmands over 1 year ago

#760 - Improve indexing ambiguity resolution in xia2.ssx

Pull Request - State: closed - Opened by jbeilstenedmands over 1 year ago

#759 - extend R-free flags for filtered.mtz to fix issue where incompatible

Pull Request - State: closed - Opened by ndevenish over 1 year ago - 2 comments

#758 - Restructure xia2.ssx_reduce workflow

Pull Request - State: closed - Opened by jbeilstenedmands over 1 year ago - 1 comment

#757 - No batch offsets for slicing

Pull Request - State: closed - Opened by jbeilstenedmands over 1 year ago - 1 comment

#756 - Attempt to fix imageset slicing fallout

Pull Request - State: closed - Opened by jbeilstenedmands over 1 year ago - 1 comment

#755 - xia2.multiplex: handle multiple wavelengths

Pull Request - State: closed - Opened by jbeilstenedmands over 1 year ago - 1 comment

#754 - Update angular model options in xia2.ssx

Pull Request - State: closed - Opened by jbeilstenedmands over 1 year ago - 1 comment

#753 - Drop support for python 3.8

Pull Request - State: closed - Opened by jbeilstenedmands over 1 year ago - 1 comment

#752 - Change ssx ellipsoid model to use simple6 parameterisation

Pull Request - State: closed - Opened by jbeilstenedmands over 1 year ago - 1 comment

#751 - Multiplex: how does one use the `identifiers` option?

Issue - State: closed - Opened by dagewa over 1 year ago - 3 comments

#750 - xia2.ssx does not output stereographic projection plots

Issue - State: closed - Opened by jbeilstenedmands over 1 year ago - 1 comment

#749 - Multiplex: failed with `IndexError`

Issue - State: closed - Opened by dagewa over 1 year ago - 3 comments

#748 - Multiplex reindex to ref

Pull Request - State: closed - Opened by amyjaynethompson over 1 year ago - 1 comment

#747 - extend R-free flags for filtered.mtz to fix issue where incompatible

Pull Request - State: closed - Opened by amyjaynethompson over 1 year ago - 3 comments

#746 - DIALS 3.15.1

Pull Request - State: closed - Opened by DiamondLightSource-build-server over 1 year ago - 1 comment

#745 - Fix uncontrolled matplotlib import in cluster_analysis

Pull Request - State: closed - Opened by ndevenish over 1 year ago - 1 comment

#744 - Cluster update

Pull Request - State: closed - Opened by amyjaynethompson over 1 year ago - 3 comments

#743 - xia2.ssx_reduce add partiality_threshold parameter

Pull Request - State: closed - Opened by jbeilstenedmands over 1 year ago

#742 - Manually rename missed newsfragment

Pull Request - State: closed - Opened by jbeilstenedmands over 1 year ago

#741 - Multiplex cluster output

Pull Request - State: closed - Opened by amyjaynethompson over 1 year ago - 1 comment
Labels: PR: merge conflicts

#738 - Multiplex: does not exit cleanly when provided with serial still data

Issue - State: closed - Opened by dagewa over 1 year ago - 1 comment

#736 - Add xia2.ssx geometry refinement documentation

Pull Request - State: closed - Opened by jbeilstenedmands almost 2 years ago - 1 comment

#735 - Report hit rate, indexing rate and integration rate in xia2.ssx

Pull Request - State: closed - Opened by jbeilstenedmands almost 2 years ago - 1 comment

#734 - Multiplex ref

Pull Request - State: closed - Opened by amyjaynethompson almost 2 years ago - 3 comments
Labels: PR: merge conflicts

#733 - Ssx clustering

Pull Request - State: closed - Opened by amyjaynethompson almost 2 years ago - 2 comments

#732 - Export FreeR_flag column to merged mtz

Pull Request - State: closed - Opened by rjgildea almost 2 years ago - 1 comment

#731 - Improve assess_crystals mode of xia2.ssx

Pull Request - State: closed - Opened by jbeilstenedmands almost 2 years ago