Ecosyste.ms: Issues

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GitHub / wwPDB/py-wwpdb_utils_dp issues and pull requests

#53 - Adding site-config source command before dp operations

Pull Request - State: closed - Opened by wmorellato 3 months ago

#52 - Daother 9318: Changing RunRemote to run slurm

Pull Request - State: closed - Opened by wmorellato 3 months ago

#51 - Revert "Daother 9035"

Pull Request - State: closed - Opened by neliebi 7 months ago

#50 - Daother 9035

Pull Request - State: closed - Opened by neliebi 7 months ago

#49 - Daother 9179

Pull Request - State: closed - Opened by wmorellato 8 months ago

#48 - Mock op for pcm

Pull Request - State: closed - Opened by wmorellato 8 months ago

#46 - Daother 9339 - add mechanism to calculate structure complexity

Pull Request - State: closed - Opened by epeisach 10 months ago

#45 - Adapt command to replace `atomcheck` by `checkemupload`

Pull Request - State: closed - Opened by lucas-ebi about 1 year ago

#44 - Passing numProc parameter down to ChemRefDataExec

Pull Request - State: closed - Opened by wmorellato about 1 year ago

#43 - New plugin em-map-model-upload-check

Pull Request - State: closed - Opened by neliebi over 1 year ago

#42 - DAOTHER-8358: Added sync-depositors op

Pull Request - State: closed - Opened by wmorellato almost 2 years ago

#41 - Add chimera to PATH

Pull Request - State: closed - Opened by epeisach over 2 years ago

#40 - Adapting commands to new Codon Cluster at EBI

Pull Request - State: closed - Opened by Smat26 almost 3 years ago

#39 - Added chem ref operations

Pull Request - State: closed - Opened by wmorellato over 3 years ago

#38 - Daother 7374

Pull Request - State: closed - Opened by berrisfordjohn over 3 years ago

#36 - unset DISPLAY variable - ensure va uses --nogui for chimeraX

Pull Request - State: closed - Opened by berrisfordjohn over 3 years ago

#35 - Simplify run remote

Pull Request - State: closed - Opened by berrisfordjohn over 3 years ago

#34 - ensure folders are made for sequence update

Pull Request - State: closed - Opened by berrisfordjohn over 3 years ago

#33 - correct escaping when running as sh script

Pull Request - State: closed - Opened by berrisfordjohn over 3 years ago

#32 - Fixed issue arising from destructive set in gemmi

Pull Request - State: closed - Opened by Smat26 over 3 years ago - 1 comment

#31 - WIP: Assembly feature (Workflow Implementation)

Pull Request - State: closed - Opened by Smat26 over 3 years ago - 2 comments

#30 - add debugging

Pull Request - State: closed - Opened by berrisfordjohn over 3 years ago

#29 - Command prefix

Pull Request - State: closed - Opened by berrisfordjohn over 3 years ago

#28 - Daother 6772

Pull Request - State: closed - Opened by berrisfordjohn over 3 years ago

#26 - Exporting OE vars for prd-process-summary

Pull Request - State: closed - Opened by wmorellato over 3 years ago

#25 - Setting PATH from onedep host to remote command

Pull Request - State: closed - Opened by wmorellato over 3 years ago

#23 - added commands for running sequence maintenance to rcsbdbutility

Pull Request - State: closed - Opened by berrisfordjohn over 3 years ago

#22 - Daother 6908

Pull Request - State: closed - Opened by berrisfordjohn over 3 years ago

#21 - PEP8/Pylint cleanup with azure implementation

Pull Request - State: closed - Opened by epeisach over 3 years ago

#20 - enable support for codon

Pull Request - State: closed - Opened by berrisfordjohn over 3 years ago - 1 comment

#18 - Added task for chem comp report generation

Pull Request - State: closed - Opened by wmorellato over 3 years ago - 3 comments

#17 - WIP: Run Remote Improvements

Pull Request - State: open - Opened by Smat26 over 3 years ago

#16 - use ConfigInfoApp.py for dictionary access

Pull Request - State: closed - Opened by berrisfordjohn almost 4 years ago

#15 - Daother 6609

Pull Request - State: closed - Opened by berrisfordjohn almost 4 years ago

#14 - Gitlab

Pull Request - State: closed - Opened by berrisfordjohn almost 4 years ago

#13 - Daother 6155

Pull Request - State: closed - Opened by berrisfordjohn over 4 years ago

#12 - removed setting num_threads for EBI cluster to improve performance

Pull Request - State: closed - Opened by berrisfordjohn over 4 years ago

#11 - removed setting num_threads for EBI cluster to improve performance

Pull Request - State: closed - Opened by berrisfordjohn over 4 years ago

#10 - updated to not hard code pdbe site

Pull Request - State: closed - Opened by berrisfordjohn about 5 years ago

#9 - Added underscore so emdbid is passed properly.

Pull Request - State: closed - Opened by Ryan-Pye over 5 years ago

#8 - Can now pass emdbid through rcsbutility, added to support generation …

Pull Request - State: closed - Opened by Ryan-Pye over 5 years ago

#7 - Escapes variable substitution so the variable is evaluated after subm…

Pull Request - State: closed - Opened by Ryan-Pye over 5 years ago

#6 - Daother 3858

Pull Request - State: closed - Opened by Ryan-Pye over 5 years ago

#5 - added support for multiprocessors to bsub jobs

Pull Request - State: closed - Opened by berrisfordjohn over 5 years ago

#4 - Updated bsub memory test

Pull Request - State: closed - Opened by berrisfordjohn over 5 years ago

#3 - Daother 4270

Pull Request - State: closed - Opened by berrisfordjohn almost 6 years ago

#2 - DAOTHER-3701 #comment implement finer grade retention of validation r…

Pull Request - State: closed - Opened by epeisach about 6 years ago

#1 - use relative path

Pull Request - State: closed - Opened by berrisfordjohn about 6 years ago