wtclarke/spec2nii issues and pull requests

#142 - REL: 0.8.1

Pull Request - State: closed - Opened by wtclarke 2 days ago

#141 - Updated list of PSDs to correctly enter _process_hbcd()

Pull Request - State: closed - Opened by agudmundson 2 days ago

#140 - hbcd psd was left in the GE/ge_pfile/_process_gaba() list.

Pull Request - State: closed - Opened by agudmundson 2 days ago - 1 comment

#139 - MNT: Drop python 3.8 support, add 3.12, deal with numpy 2.0

Pull Request - State: closed - Opened by wtclarke 2 days ago

#138 - the same sidecar files for three different MRS files

Issue - State: open - Opened by juliam98 29 days ago - 4 comments

#137 - GE ISTHMUS/Hyper Sequence

Pull Request - State: closed - Opened by agudmundson about 1 month ago - 1 comment

#136 - ENH/svs_slaser_dkd

Pull Request - State: closed - Opened by wtclarke 3 months ago

#135 - ENH: twix mixed headers

Pull Request - State: closed - Opened by wtclarke 3 months ago

#134 - Siemens Twix/.dat from VX line has XA style headers

Issue - State: closed - Opened by wtclarke 3 months ago

#133 - Add support for .txt files exported by older versions of jMRUI

Pull Request - State: closed - Opened by DC-3T 3 months ago - 1 comment

#132 - Enhance support for GE data

Pull Request - State: closed - Opened by markmikkelsen 4 months ago - 13 comments

#131 - ENH: Added handling and tests for Philips MEGA sequence.

Pull Request - State: closed - Opened by wtclarke 4 months ago

#130 - BF: Correct Universal editing sequence HERMES conditions and tests for XA50 twix and RDA

Pull Request - State: closed - Opened by wtclarke 4 months ago

#129 - BF: Tests on XA50 twix and rda, fixes for mgs_svs_ed

Pull Request - State: closed - Opened by wtclarke 4 months ago

#128 - ENH: Validated rda orientation and CSI handling

Pull Request - State: closed - Opened by wtclarke 4 months ago

#127 - Inconsistent voxel position in converted rda and twix files of a same acquisition

Issue - State: closed - Opened by behrouzvia 4 months ago - 3 comments

#126 - Does auto conversion support TWIX data from XA50?

Issue - State: closed - Opened by shui5 5 months ago - 13 comments

#125 - Converrsion fails using Siemens dicom file

Issue - State: closed - Opened by behrouzvia 6 months ago - 7 comments

#124 - dMRS and MEGA-sLASER fixes for PV360.1.1

Pull Request - State: closed - Opened by clemoune 7 months ago

#123 - Conversion failure on GE data

Issue - State: open - Opened by mcraig-ibme 7 months ago - 17 comments

#122 - BF: Fix DICOM naming bug with mixed types

Pull Request - State: closed - Opened by wtclarke 7 months ago

#121 - BF: Improvements in Philips tag handling.

Pull Request - State: closed - Opened by wtclarke 7 months ago

#120 - Enh: Automatically add spectralwidth to header extension

Pull Request - State: closed - Opened by wtclarke 7 months ago - 1 comment

#119 - Add a duecredit citation for whenever spec2nii is used

Pull Request - State: closed - Opened by marcelzwiers 8 months ago - 1 comment

#118 - Rel: 0.7.1

Pull Request - State: closed - Opened by wtclarke 8 months ago

#117 - add support for GE P-file rev 29.1 & 30.0

Pull Request - State: closed - Opened by hfxcarl 8 months ago - 5 comments

#116 - Add support for converting GE P-files revision 30.0

Issue - State: closed - Opened by hfxcarl 8 months ago - 1 comment

#115 - BF: RDA decoding issue

Pull Request - State: closed - Opened by wtclarke 9 months ago

#114 - ENH: Add handling and tests for CSI data stored in Siemens enhanced DICOM

Pull Request - State: closed - Opened by wtclarke 9 months ago

#113 - Enh: Anonymisation at runtime

Pull Request - State: closed - Opened by wtclarke 9 months ago

#112 - Include potential fix for a decoding issue reported. Awaiting test data.

Pull Request - State: closed - Opened by wtclarke 9 months ago

#111 - Handle enhanced dicom CSI data from Siemens

Issue - State: closed - Opened by wtclarke 9 months ago - 1 comment

#110 - Singleton dimension generated for single transient SPAR/SDAT

Issue - State: closed - Opened by wtclarke 9 months ago

#109 - "spectral width" field not stored in nii header extension

Issue - State: closed - Opened by schorschinho 9 months ago - 2 comments

#108 - spec2nii anon to also act on a JSON sidecar

Issue - State: closed - Opened by schorschinho 9 months ago - 1 comment

#107 - `{str(x)}` → `{x}`

Pull Request - State: closed - Opened by DimitriPapadopoulos 9 months ago - 1 comment

#106 - `math.log(..., 2)` → `math.log2(...)`

Pull Request - State: closed - Opened by DimitriPapadopoulos 9 months ago - 1 comment

#105 - `in [x, y, z]` → `in (x, y, z)`

Pull Request - State: closed - Opened by DimitriPapadopoulos 9 months ago

#104 - Use list comprehensions

Pull Request - State: closed - Opened by DimitriPapadopoulos 9 months ago - 1 comment

#103 - `int(1)` → `1`

Pull Request - State: closed - Opened by DimitriPapadopoulos 9 months ago - 1 comment

#102 - `lambda x, y: x * y` → `operator.mul`

Pull Request - State: closed - Opened by DimitriPapadopoulos 9 months ago - 1 comment

#101 - Use items() to iterate over a dictionary

Pull Request - State: closed - Opened by DimitriPapadopoulos 9 months ago - 1 comment

#100 - `range(len(...))` → `enumerate(...)`

Pull Request - State: closed - Opened by DimitriPapadopoulos 9 months ago - 1 comment

#99 - Use literal syntax to create the data structure

Pull Request - State: closed - Opened by DimitriPapadopoulos 9 months ago - 1 comment

#98 - Avoid redefining Python builtins

Pull Request - State: closed - Opened by DimitriPapadopoulos 9 months ago

#97 - FIX:UnicodeDecodeError while converting rda files

Pull Request - State: closed - Opened by gaunab 10 months ago - 6 comments

#96 - converting RDA results in UnicodeDecodeError

Issue - State: closed - Opened by gaunab 10 months ago - 1 comment

#95 - Bump actions/checkout from 3 to 4

Pull Request - State: closed - Opened by DimitriPapadopoulos 10 months ago

#94 - f-strings everywhere

Pull Request - State: closed - Opened by DimitriPapadopoulos 10 months ago - 3 comments

#93 - Fix typos found by codespell

Pull Request - State: closed - Opened by DimitriPapadopoulos 10 months ago

#92 - Mixed spectroscopy and imaging dicom files fail

Issue - State: closed - Opened by wtclarke 10 months ago

#91 - Spec2nii twix warning.

Issue - State: closed - Opened by wtclarke 11 months ago - 1 comment

#90 - spec2nii ge Pfile: spec2nii.GE.ge_read_pfile.UnknownPfile: No Pfile mapper for pulse sequence = slaser

Issue - State: closed - Opened by weberam2 over 1 year ago - 8 comments

#89 - Updates for Hyper Sequence

Pull Request - State: closed - Opened by agudmundson 11 months ago - 5 comments

#88 - Rel: 0.7.0

Pull Request - State: closed - Opened by wtclarke 11 months ago

#87 - Updates to "Dim_" handling

Pull Request - State: closed - Opened by agudmundson 11 months ago

#86 - BF: Fix Philips classic DICOM orientation

Pull Request - State: closed - Opened by wtclarke 11 months ago

#85 - BF: Insert extract dump on non compliant files

Pull Request - State: closed - Opened by wtclarke 11 months ago

#84 - BF: Fixes and tests for Philips orientations. Python 3.7 support dropped.

Pull Request - State: closed - Opened by wtclarke 11 months ago

#83 - Updated GE for HBCD

Pull Request - State: closed - Opened by agudmundson 12 months ago

#82 - SPEC2NII Returns 0 Units

Issue - State: closed - Opened by JBarsotti 12 months ago - 17 comments

#81 - Python 3.7 end of life

Issue - State: closed - Opened by wtclarke 12 months ago - 1 comment

#80 - Do not install tests in site-packages

Pull Request - State: closed - Opened by musicinmybrain 12 months ago - 2 comments

#79 - Rel/0.6.9

Pull Request - State: closed - Opened by wtclarke 12 months ago

#78 - Include CHANGELOG.md in the sdist, VESPA_LICENSE in the sdist and wheel

Pull Request - State: closed - Opened by musicinmybrain almost 1 year ago

#77 - Some files are perhaps unintentionally not distributed

Issue - State: closed - Opened by musicinmybrain almost 1 year ago - 2 comments

#76 - http:// → https://

Pull Request - State: closed - Opened by DimitriPapadopoulos about 1 year ago

#75 - Support for Philips MEGA-PRESS dicom

Issue - State: closed - Opened by JonteP about 1 year ago - 7 comments