wolny/pytorch-3dunet issues and pull requests

#119 - fix: remove redundant final_activation layer in model.py

Pull Request - State: open - Opened by JCasaraconn about 2 months ago - 1 comment

#118 - Fix/missing return statement

Pull Request - State: closed - Opened by shota-0129 5 months ago - 2 comments

#117 - Basic pipeline working prototype for heatmap classification training

Pull Request - State: closed - Opened by JulianYG 5 months ago

#116 - Yuang/feat run training

Pull Request - State: closed - Opened by JulianYG 5 months ago

#115 - fix overwriting of prediction for multiple thresholds

Pull Request - State: closed - Opened by Josh-Talks 7 months ago - 1 comment

#114 - Fix GitHub Workflow: Conda Build

Pull Request - State: closed - Opened by qin-yu 8 months ago
Labels: bug

#113 - Fix halo implementation and tiling artefact

Pull Request - State: closed - Opened by qin-yu 8 months ago - 3 comments
Labels: bug, enhancement

#112 - Add 'save_segmentation' option to prediction

Pull Request - State: closed - Opened by wolny 8 months ago

#111 - Adjust kits19 distributed

Pull Request - State: closed - Opened by RazHoshia 9 months ago

#110 - Fix lazy HDF5 loader

Pull Request - State: closed - Opened by wolny 9 months ago

#109 - fix tracerwarning when trying to convert a model into torchscript

Pull Request - State: closed - Opened by jens-maus 10 months ago - 3 comments

#108 - implemented channelwise support for Normalize transform.

Pull Request - State: closed - Opened by jens-maus 11 months ago - 5 comments

#107 - Fix typo in loss_config key for BCEDiceLoss

Pull Request - State: closed - Opened by HamishMatthews 11 months ago

#106 - pull

Pull Request - State: closed - Opened by yasumayu 11 months ago

#105 - Improve ResidualUNet

Pull Request - State: closed - Opened by wolny 11 months ago

#104 - Override config yaml with parameters from command line

Pull Request - State: closed - Opened by wolny 12 months ago

#103 - implemented dropout layer support for reducing overfitting.

Pull Request - State: closed - Opened by jens-maus 12 months ago - 2 comments

#102 - fix NoneType situation if lr_scheduler is disabled.

Pull Request - State: closed - Opened by jens-maus 12 months ago

#101 - added final activation before eval score calculation

Pull Request - State: closed - Opened by jens-maus almost 1 year ago - 1 comment

#100 - remove obsolete cuda init which is performed in next if anyway.

Pull Request - State: closed - Opened by jens-maus almost 1 year ago

#99 - implement dynamic upsample mode flexibility

Pull Request - State: closed - Opened by jens-maus almost 1 year ago - 2 comments

#98 - implement optional conv_upscale parameter in AbstractUNet to allow to define at which convolution level upscaling should be performed.

Pull Request - State: closed - Opened by jens-maus almost 1 year ago - 4 comments

#97 - introduce 'name' parameter for more optimizer types

Pull Request - State: closed - Opened by jens-maus almost 1 year ago - 1 comment

#96 - Move tensorboard event files to separate folders and copy config file

Pull Request - State: closed - Opened by cleapeter about 1 year ago - 1 comment

#95 - implemented norm01 option for Normalize class

Pull Request - State: closed - Opened by jens-maus about 1 year ago

#94 - Fix AttributeError in Pillow package

Pull Request - State: closed - Opened by cleapeter about 1 year ago - 2 comments

#93 - Error fix: object 'config' has no attribute 'type'

Pull Request - State: closed - Opened by bbrence about 1 year ago - 1 comment

#92 - Develop

Pull Request - State: closed - Opened by hummat about 1 year ago

#91 - partial convolution

Pull Request - State: closed - Opened by tmyok over 1 year ago - 1 comment

#90 - Move model to cuda.

Pull Request - State: closed - Opened by tibuch over 1 year ago - 1 comment

#89 - [docs] `pip install` from GitHub

Pull Request - State: closed - Opened by jamesbraza over 1 year ago - 1 comment

#88 - Optimize UNet2D to use the 2D convolutions

Pull Request - State: closed - Opened by wolny over 1 year ago - 3 comments

#87 - Add Squeeze and Excitation and UNETR as an option

Pull Request - State: closed - Opened by imadtoubal almost 2 years ago - 2 comments

#86 - Improve AdaptedRandError and other functions

Pull Request - State: closed - Opened by qin-yu about 2 years ago
Labels: bug, enhancement

#85 - fix deprecated import of Sequence from collections

Pull Request - State: closed - Opened by lorenzocerrone about 2 years ago - 2 comments

#84 - Fix prefix of epochs and iterations

Pull Request - State: closed - Opened by lee1221ee almost 3 years ago - 1 comment

#83 - Update environment.yaml

Pull Request - State: closed - Opened by constantinpape almost 3 years ago - 1 comment

#82 - Remove torchvision dependency

Pull Request - State: closed - Opened by wolny almost 3 years ago

#81 - Refactor

Pull Request - State: closed - Opened by wolny almost 3 years ago

#80 - Lazyloader fix

Pull Request - State: closed - Opened by alexmatskevych almost 3 years ago - 1 comment

#79 - simple_3DUnet

Pull Request - State: closed - Opened by FMMoliere over 3 years ago

#78 - Create command-lines (i.e. console_scripts) when installing from source

Pull Request - State: closed - Opened by dorkylever over 3 years ago - 1 comment

#77 - Update README.md

Pull Request - State: closed - Opened by RichardScottOZ over 3 years ago

#76 - fix weights unsqueeze in PixelWiseCrossEntropy

Pull Request - State: closed - Opened by kevinyamauchi over 3 years ago - 2 comments

#75 - Refactor

Pull Request - State: closed - Opened by wolny almost 4 years ago

#74 - Training Pixel embeddings

Pull Request - State: closed - Opened by wolny almost 4 years ago

#73 - Added procedure to create multiple heads

Pull Request - State: closed - Opened by kiryteo almost 4 years ago - 2 comments

#72 - Update README

Pull Request - State: closed - Opened by wolny over 4 years ago

#71 - Add a single 2D U-Net trained on ovules to bioimage-io

Pull Request - State: closed - Opened by wolny over 4 years ago

#70 - Add model zoo descriptors for 2D UNets

Pull Request - State: closed - Opened by wolny over 4 years ago - 1 comment

#69 - Minor improvements: tensorboard logging / configuration

Pull Request - State: closed - Opened by wolny over 4 years ago

#68 - Allow slice-by-slice prediction of a 3D volume with 2D UNet

Pull Request - State: closed - Opened by wolny over 4 years ago

#67 - bump pybio package version to test

Pull Request - State: closed - Opened by FynnBe over 4 years ago

#66 - test UNet3DArabidopsisOvules package

Pull Request - State: closed - Opened by FynnBe over 4 years ago