Ecosyste.ms: Issues

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GitHub / wolberlab/dynophores issues and pull requests

#64 - Update package w.r.t. new black & pandas versions

Pull Request - State: closed - Opened by dominiquesydow over 1 year ago - 1 comment

#63 - Update GHA CI.yml file

Pull Request - State: closed - Opened by dominiquesydow almost 2 years ago - 1 comment

#61 - Update CI schedule to Mondays 3 am UTC

Pull Request - State: closed - Opened by dominiquesydow about 2 years ago

#60 - Pin `ipywidgets` < 8 to solve #59

Pull Request - State: closed - Opened by dominiquesydow about 2 years ago - 1 comment

#58 - Ignored linting errors for ipynb not ignored anymore (`flake8-nb`)

Issue - State: closed - Opened by dominiquesydow about 2 years ago - 1 comment

#57 - Fix docs CI

Pull Request - State: closed - Opened by dominiquesydow over 2 years ago - 1 comment

#56 - Trigger CI

Pull Request - State: closed - Opened by dominiquesydow over 2 years ago - 1 comment

#55 - Update install details with conda-forge channel

Pull Request - State: closed - Opened by dominiquesydow almost 3 years ago

#53 - Add docs on how to save figures

Pull Request - State: closed - Opened by dominiquesydow almost 3 years ago - 1 comment

#52 - `seaborn` heatmaps not shown with `%matplotlib widget`

Issue - State: open - Opened by dominiquesydow almost 3 years ago - 1 comment
Labels: bug

#51 - Integrate dynophore generation and visualization

Pull Request - State: open - Opened by dominiquesydow almost 3 years ago
Labels: enhancement

#50 - Input Data

Issue - State: closed - Opened by hl2500 almost 3 years ago - 2 comments

#49 - Upgrade codecov-action to v2

Pull Request - State: closed - Opened by dominiquesydow about 3 years ago - 1 comment

#48 - Link CodeCov to wolberlab/dynophores repo

Issue - State: closed - Opened by dominiquesydow about 3 years ago - 2 comments

#47 - Replace in GH URLs dominiquesydow with wolberlab

Pull Request - State: closed - Opened by dominiquesydow about 3 years ago

#46 - Improve documentation

Pull Request - State: closed - Opened by dominiquesydow about 3 years ago - 1 comment

#45 - Move repo to wolberlab organization

Issue - State: closed - Opened by dominiquesydow about 3 years ago

#44 - NGLview: Check type for sphere center

Issue - State: closed - Opened by dominiquesydow about 3 years ago - 1 comment

#43 - Fix CLI usage in docs

Pull Request - State: closed - Opened by dominiquesydow about 3 years ago - 1 comment

#42 - Update user guide in docs

Pull Request - State: closed - Opened by dominiquesydow about 3 years ago

#41 - Docker container for dynophores?

Issue - State: open - Opened by cap-jmk about 3 years ago - 6 comments
Labels: enhancement

#40 - Update documentation

Issue - State: open - Opened by dominiquesydow about 3 years ago
Labels: documentation

#39 - Update dyno notebook

Pull Request - State: closed - Opened by dominiquesydow about 3 years ago - 2 comments

#38 - More documention in dynophore Jupyter notebook

Issue - State: closed - Opened by dominiquesydow about 3 years ago

#37 - Enable CLI tests in CI

Issue - State: closed - Opened by dominiquesydow about 3 years ago - 1 comment
Labels: question

#36 - Collapse envpartners with same residue and superfeature

Pull Request - State: closed - Opened by dominiquesydow about 3 years ago - 2 comments
Labels: enhancement

#35 - Distance plots: Show interaction-relevant distances

Pull Request - State: closed - Opened by dominiquesydow about 3 years ago - 2 comments

#34 - Prettify notebook plots

Issue - State: open - Opened by dominiquesydow about 3 years ago
Labels: question

#33 - Fix interactive widgets

Pull Request - State: closed - Opened by dominiquesydow about 3 years ago - 2 comments

#32 - Color clouds by frame

Pull Request - State: closed - Opened by dominiquesydow over 3 years ago - 2 comments

#31 - Simplify rdkit molecule generation for ligand

Pull Request - State: closed - Opened by dominiquesydow over 3 years ago - 2 comments

#30 - Plots: Collapse all feature per envpartner

Issue - State: closed - Opened by dominiquesydow over 3 years ago
Labels: enhancement

#29 - Plots notebook: Save widget state

Pull Request - State: closed - Opened by dominiquesydow over 3 years ago - 2 comments

#28 - Extend NGL dynophore visualization

Pull Request - State: closed - Opened by dominiquesydow over 3 years ago - 2 comments

#27 - Dynophore 3D viz: NGL PointBuffer artifacts

Issue - State: open - Opened by dominiquesydow over 3 years ago - 1 comment
Labels: enhancement

#26 - Move to JupyterLab 3

Issue - State: closed - Opened by dominiquesydow over 3 years ago

#25 - Open tech tasks for v1.0.0

Issue - State: open - Opened by dominiquesydow over 3 years ago

#24 - Improve 2D ligand view

Issue - State: open - Opened by dominiquesydow over 3 years ago - 1 comment
Labels: enhancement

#23 - Use plt.eventplot for superfeature/envpartner occurrences

Pull Request - State: closed - Opened by dominiquesydow over 3 years ago - 1 comment

#22 - Replace hardcoded feature colors with superfeature color attribute

Pull Request - State: closed - Opened by dominiquesydow over 3 years ago

#21 - Update core classes w.r.t. dynophore 0.2 output

Pull Request - State: closed - Opened by dominiquesydow over 3 years ago - 1 comment

#20 - Visualisation with d3.js

Pull Request - State: closed - Opened by nadja-mansurov over 3 years ago - 5 comments

#19 - Extend cloud information

Pull Request - State: closed - Opened by dominiquesydow over 3 years ago - 2 comments

#18 - Add dependency to env variables

Pull Request - State: closed - Opened by nadja-mansurov over 3 years ago - 9 comments

#17 - Add ligand 2D view

Pull Request - State: closed - Opened by dominiquesydow over 3 years ago - 4 comments

#16 - Add instruction for failed pip-installation

Pull Request - State: closed - Opened by nadja-mansurov over 3 years ago - 8 comments

#15 - Optimize plotting (i.e. core classes)

Pull Request - State: closed - Opened by dominiquesydow over 3 years ago - 2 comments

#14 - Simplify input

Pull Request - State: closed - Opened by dominiquesydow over 3 years ago - 1 comment

#13 - Extend CLI with `dynoviz demo`

Pull Request - State: closed - Opened by dominiquesydow over 3 years ago - 1 comment

#12 - Read dynophores from JSON (will become default)

Pull Request - State: closed - Opened by dominiquesydow over 3 years ago - 1 comment

#11 - Allow deprecated DynophoreApp file structure + enhance plotting

Pull Request - State: closed - Opened by dominiquesydow over 3 years ago - 2 comments

#10 - Add user notebook to package (not only docs)

Pull Request - State: closed - Opened by dominiquesydow over 3 years ago - 2 comments

#9 - Correct installation steps in docs

Pull Request - State: closed - Opened by dominiquesydow over 3 years ago

#8 - Open tasks for v1.0.0

Issue - State: closed - Opened by dominiquesydow over 3 years ago - 5 comments

#7 - Add CLI

Pull Request - State: closed - Opened by dominiquesydow over 3 years ago - 2 comments

#6 - Enable dynophores.readthedocs.io

Pull Request - State: closed - Opened by dominiquesydow over 3 years ago

#5 - Add tutorials/docs + interactive plots + 3D visualization

Pull Request - State: closed - Opened by dominiquesydow over 3 years ago - 2 comments

#4 - Refactor code and add unit tests

Pull Request - State: closed - Opened by dominiquesydow over 3 years ago - 1 comment

#3 - Set up CI

Pull Request - State: closed - Opened by dominiquesydow over 3 years ago - 1 comment

#2 - Add webapp module

Pull Request - State: closed - Opened by dominiquesydow about 4 years ago - 1 comment

#1 - Add module skeleton

Pull Request - State: closed - Opened by dominiquesydow about 4 years ago - 1 comment