Ecosyste.ms: Issues

An open API service for providing issue and pull request metadata for open source projects.

GitHub / wmayner/pyphi issues and pull requests

#126 - Fix purview plotting bug

Pull Request - State: closed - Opened by ajbailey4 2 months ago

#125 - Added PurviewCoordinates class for plotting purviews next to mechanisms

Pull Request - State: closed - Opened by ajbailey4 3 months ago - 1 comment

#124 - Minor corrections to documentation.

Pull Request - State: closed - Opened by isacdaavid 4 months ago

#123 - Update Tests for 4.0

Pull Request - State: closed - Opened by ajbailey4 4 months ago - 1 comment

#122 - New Subsystem With Forward and Backward TPMs

Pull Request - State: closed - Opened by ajbailey4 6 months ago - 2 comments

#121 - Fix 4.0 links in docs

Pull Request - State: closed - Opened by matteograsso 8 months ago

#120 - Update docs

Pull Request - State: closed - Opened by matteograsso 8 months ago

#119 - Update index.rst

Pull Request - State: closed - Opened by matteograsso 8 months ago

#118 - Update index.rst

Pull Request - State: closed - Opened by matteograsso 8 months ago

#117 - Notebook for recording # of nodes and processing time

Pull Request - State: open - Opened by HireTheHero 9 months ago

#116 - Avoiding circular import by renaming pandas.py

Pull Request - State: open - Opened by HireTheHero 9 months ago

#115 - Scalability to large network

Issue - State: closed - Opened by HireTheHero 10 months ago - 6 comments

#114 - put strong connectivity check in config.SHORTCIRCUIT_SIA.

Pull Request - State: open - Opened by Astrocytes120 12 months ago

#113 - Feature/iit 4.0

Pull Request - State: closed - Opened by isacdaavid 12 months ago

#112 - pyphi execution hangs after outputting one line

Issue - State: closed - Opened by nickums 12 months ago - 2 comments

#111 - Update an option for checking the strong connectivity of connectivity matrix.

Pull Request - State: closed - Opened by Astrocytes120 12 months ago - 3 comments

#110 - Version 1.2.1 has never been released

Issue - State: open - Opened by penguinpee about 1 year ago

#109 - Fixed Iterator issue

Pull Request - State: closed - Opened by Mayank447 over 1 year ago - 1 comment

#108 - Python3.12: Tests fail

Issue - State: open - Opened by penguinpee over 1 year ago - 2 comments

#107 - Import error

Issue - State: closed - Opened by Shahik15 over 1 year ago - 1 comment

#105 - Initial support for Implicit TPMs

Pull Request - State: open - Opened by isacdaavid over 1 year ago

#104 - Fix syntax for `ImplicitTPM.__hash__()`

Pull Request - State: closed - Opened by dviggiano over 1 year ago

#103 - Fix subsystem validation and implement hashing for ImplicitTPM

Pull Request - State: closed - Opened by dviggiano over 1 year ago

#102 - node.py: Avoid circular import

Pull Request - State: closed - Opened by dviggiano over 1 year ago

#101 - generate_nodes(): Handle Implicit network TPMs

Pull Request - State: closed - Opened by dviggiano over 1 year ago

#100 - Do not use `tpm.tpm`

Pull Request - State: closed - Opened by dviggiano over 1 year ago

#99 - Use `hasattr` instead of try-catch

Pull Request - State: closed - Opened by dviggiano over 1 year ago

#98 - Add state_space to node construction in tests

Pull Request - State: closed - Opened by dviggiano over 1 year ago

#97 - Add state space reroute

Pull Request - State: closed - Opened by dviggiano over 1 year ago

#96 - Add equals method to ImplicitTPM

Pull Request - State: closed - Opened by dviggiano over 1 year ago

#95 - test_network: Add test_init_with_explicit_tpm()

Pull Request - State: closed - Opened by dviggiano over 1 year ago

#94 - Network.__repr__(): Only use dict for state_space

Pull Request - State: closed - Opened by dviggiano over 1 year ago

#93 - test_build_cm(): Combine into one test

Pull Request - State: closed - Opened by dviggiano over 1 year ago

#92 - test_build_cm_explicit_tpm(): Use np.ones()

Pull Request - State: closed - Opened by dviggiano over 1 year ago

#90 - Create new test in test_network: test_build_cm_implicit_tpm()

Pull Request - State: closed - Opened by dviggiano over 1 year ago

#89 - Network._build_cm(): Account for Iterable TPM argument

Pull Request - State: closed - Opened by dviggiano almost 2 years ago

#88 - Feature/tpm class

Pull Request - State: closed - Opened by dviggiano almost 2 years ago

#87 - Feature/tpm class

Pull Request - State: closed - Opened by dviggiano almost 2 years ago

#86 - Update tests: test_config_validation() and test_repertoire_shape()

Pull Request - State: closed - Opened by dviggiano almost 2 years ago

#84 - Only order RIA by Phi

Pull Request - State: closed - Opened by dviggiano almost 2 years ago

#83 - Refactor models and tests, specifically RIA

Pull Request - State: closed - Opened by dviggiano almost 2 years ago

#82 - test_metrics()

Pull Request - State: closed - Opened by dviggiano almost 2 years ago - 1 comment

#81 - _validate_probabilities(): Allow rtol of 1e-15

Pull Request - State: closed - Opened by dviggiano almost 2 years ago

#80 - subsystem: Throw error if nodes don't match cut

Pull Request - State: closed - Opened by dviggiano almost 2 years ago

#79 - ExplicitTPM: Numpy universal funcs and NDArrayOperatorsMixin

Pull Request - State: closed - Opened by isacdaavid almost 2 years ago - 1 comment

#78 - `docs/examples`: add 4.0 demo notebook

Pull Request - State: closed - Opened by isacdaavid almost 2 years ago

#77 - Python 3.8 support

Pull Request - State: closed - Opened by isacdaavid almost 2 years ago

#76 - Also add `PARALLEL_PURVIEW_EVALUATION` option into config file

Pull Request - State: closed - Opened by isacdaavid almost 2 years ago

#75 - Add option PARALLEL_PURVIEW_EVALUATION

Pull Request - State: closed - Opened by isacdaavid almost 2 years ago

#74 - Small workaround to coerce working with ExplicitTPMs at Subsystem

Pull Request - State: closed - Opened by isacdaavid almost 2 years ago

#72 - Sync feature/tpm-class to follow feature/iit-4.0

Pull Request - State: closed - Opened by isacdaavid about 2 years ago

#71 - More complete implementation of the TPM class

Pull Request - State: closed - Opened by isacdaavid about 2 years ago

#69 - Refactor tpm functions into ExplicitTPM class

Pull Request - State: closed - Opened by isacdaavid about 2 years ago

#68 - Create test_new_big_phi()

Pull Request - State: closed - Opened by dviggiano about 2 years ago

#67 - Create test_new_big_phi()

Pull Request - State: closed - Opened by dviggiano about 2 years ago

#66 - test_big_phi: Utilize IIT 3.0 config fixture

Pull Request - State: closed - Opened by dviggiano about 2 years ago

#65 - Utilize IIT 3.0 config fixture across test modules

Pull Request - State: closed - Opened by dviggiano about 2 years ago

#64 - test_big_phi: Utilize IIT 3.0 config fixture

Pull Request - State: closed - Opened by dviggiano about 2 years ago

#63 - add old changes

Pull Request - State: closed - Opened by dviggiano about 2 years ago

#62 - Minor fixes

Pull Request - State: closed - Opened by isacdaavid over 2 years ago - 1 comment

#61 - visualize: from collections.abc import Iterable

Pull Request - State: closed - Opened by isacdaavid over 2 years ago

#60 - atomic_write_yaml() fails to move fresh pyphi_config.yml ?

Issue - State: closed - Opened by isacdaavid over 2 years ago - 2 comments

#57 - AnalyticalRelations' _sum_phi() for INFORMATIVENESS_PURVIEW_RELATIVE

Pull Request - State: closed - Opened by zaeemzadeh over 2 years ago

#56 - Exact sum of relations phi for AnalyticalRelations

Pull Request - State: closed - Opened by zaeemzadeh over 2 years ago - 1 comment

#55 - using parent distinciton phi for AnalyticalRelations

Pull Request - State: closed - Opened by zaeemzadeh over 2 years ago

#52 - AttributeError: module pytest has no attribute lazy_fixture

Issue - State: open - Opened by 7beggars almost 3 years ago

#51 - ValueError: math domain error

Issue - State: closed - Opened by 7beggars almost 3 years ago - 1 comment

#50 - fix(py3.10) correct collections imports for python3.9+

Pull Request - State: closed - Opened by sanjayankur31 over 3 years ago - 1 comment

#49 - Initial TPM constructor

Pull Request - State: open - Opened by awitte3 over 3 years ago

#48 - Nonbinary

Pull Request - State: closed - Opened by awitte3 over 3 years ago

#47 - Fixed infer_cm, condition_tpm_nb, subsystem node tracking and dependents

Pull Request - State: closed - Opened by awitte3 over 3 years ago

#46 - infer_cm functional, work on major_complex

Pull Request - State: closed - Opened by awitte3 over 3 years ago

#45 - Key Error ID from network.json using ipycytoscape in Jupyter Lab

Issue - State: closed - Opened by 7beggars almost 4 years ago

#44 - export network file to ghephi format supported

Issue - State: closed - Opened by 7beggars almost 4 years ago

#43 - Error import network.json file in the ipython or python

Issue - State: closed - Opened by 7beggars almost 4 years ago - 2 comments

#42 - Multi-valued elements

Pull Request - State: closed - Opened by wmayner about 4 years ago

#40 - Suggested edits to visualize.py

Pull Request - State: open - Opened by matteograsso over 4 years ago

#39 - Error when trying to receive TPM using json

Issue - State: closed - Opened by DiegoBneiNoah over 4 years ago - 1 comment

#37 - Support for different ways of computing phi?

Issue - State: open - Opened by filyp over 4 years ago

#35 - Compute relations up to a certain order

Issue - State: closed - Opened by matteograsso over 4 years ago - 1 comment

#34 - multi sate pyphi

Pull Request - State: closed - Opened by juanogo about 5 years ago

#33 - where is PQR cause-effect space on fpga with φ?

Issue - State: closed - Opened by peepo about 5 years ago - 2 comments

#32 - pyphi-users mailing list

Issue - State: closed - Opened by peepo about 5 years ago - 2 comments

#31 - The readme instructions for installing via conda fails

Issue - State: closed - Opened by resperic over 5 years ago - 1 comment

#30 - bi2 function and docstring added

Pull Request - State: closed - Opened by nathanielltaylor over 5 years ago

#29 - Breaking changes in dependencies

Issue - State: closed - Opened by sliptype over 5 years ago - 1 comment

#28 - The PyPhi package may have CPU leaking

Issue - State: open - Opened by Zhangyanbo over 5 years ago - 9 comments

#27 - How did you create the connectivity graph?

Issue - State: closed - Opened by void4 almost 6 years ago - 1 comment