Ecosyste.ms: Issues

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GitHub / willtownes/glmpca issues and pull requests

#37 - Is it appropriate/possible to run IntegrateData following GLM-PCA?

Issue - State: open - Opened by jeremymsimon about 1 year ago - 1 comment

#36 - Having a combination of cite-seq and gene expression data as input

Issue - State: open - Opened by jtheorell over 2 years ago - 2 comments

#35 - Results of parameter minibatch = 'none' vs 'memoized'

Issue - State: closed - Opened by jyuan1322 over 2 years ago - 2 comments

#34 - P-values for covariate coefficients?

Issue - State: closed - Opened by leon-seranova over 2 years ago - 2 comments

#33 - Link to SVA/RUV methods?

Issue - State: open - Opened by leon-seranova over 2 years ago - 2 comments

#32 - How to choose the number of principal components in GLM-PCA?

Issue - State: open - Opened by YushaLiu over 3 years ago - 7 comments

#31 - Add vignette how to do feature selection

Issue - State: open - Opened by frederikziebell over 3 years ago - 1 comment

#30 - Batch correction - strange convergence

Issue - State: open - Opened by hanbin973 over 3 years ago - 11 comments

#29 - Mixed distribution columns

Issue - State: open - Opened by spinkney over 3 years ago - 7 comments

#28 - Return factors and loadings as matrices instead of data frames

Issue - State: open - Opened by willtownes over 3 years ago - 2 comments

#26 - Poisson GLM PCA: Convergence issues with avagrad

Issue - State: open - Opened by jlause about 4 years ago - 1 comment

#25 - Feature request: Fixing nb.theta during optimization

Issue - State: open - Opened by willtownes about 4 years ago

#24 - Possible usecase for glmGamPoi

Issue - State: closed - Opened by frederikziebell about 4 years ago - 1 comment

#23 - SpatialFeaturePlot - "could not find function"

Issue - State: closed - Opened by venchi9 about 4 years ago

#22 - Speed up matrix operations with parallelization

Issue - State: open - Opened by willtownes about 4 years ago

#21 - Seurat RunGLMPCA Error

Issue - State: closed - Opened by TJCooperIL about 4 years ago - 3 comments

#20 - Reduce glmpca_family memory consumption

Issue - State: open - Opened by willtownes about 4 years ago - 1 comment

#19 - Feature-specific negative binomial shape parameters

Issue - State: open - Opened by willtownes about 4 years ago

#18 - Disk-based data

Issue - State: open - Opened by willtownes about 4 years ago

#17 - an error of GLMPCA

Issue - State: closed - Opened by 1156054203 about 4 years ago - 2 comments

#16 - Computation Speed

Issue - State: closed - Opened by SONGDONGYUAN1994 over 4 years ago - 1 comment

#15 - improve negative binomial overdispersion estimation

Issue - State: open - Opened by willtownes over 4 years ago - 3 comments

#14 - Variance explained

Issue - State: closed - Opened by frederikziebell over 4 years ago - 2 comments

#12 - Updated paper link

Pull Request - State: closed - Opened by flying-sheep over 4 years ago - 2 comments

#11 - Sparse Matrix support

Issue - State: closed - Opened by davemcg over 4 years ago - 8 comments

#10 - Can glmpca perform factor analysis?

Issue - State: open - Opened by seawavevan almost 5 years ago - 1 comment

#9 - GLMPCA on lognormal distributed data

Issue - State: closed - Opened by JauntyJJS almost 5 years ago - 4 comments

#8 - Gaussian family

Issue - State: open - Opened by willtownes almost 5 years ago

#7 - divergence even after increased penalties

Issue - State: closed - Opened by ttriche almost 5 years ago - 7 comments

#6 - automatic penalty increase with warning

Issue - State: closed - Opened by SamueleSoraggi almost 5 years ago - 5 comments

#5 - Error if `L=1`

Issue - State: closed - Opened by const-ae almost 5 years ago - 2 comments

#4 - rolled R version back to 3.5, tests pass

Pull Request - State: closed - Opened by rmflight almost 5 years ago - 1 comment

#3 - Discuss seed?

Issue - State: closed - Opened by mikelove about 5 years ago - 2 comments

#2 - Give vignette a meaningful title in the index

Pull Request - State: closed - Opened by PeteHaitch about 5 years ago - 2 comments

#1 - Include deviance function

Issue - State: closed - Opened by bc2zb about 5 years ago - 2 comments