wilhelm-lab/spectrum_fundamentals issues and pull requests

#154 - Patch/0.7.8

Pull Request - State: closed - Opened by picciama about 1 month ago

#153 - Fix/xl percolator gen features

Pull Request - State: closed - Opened by mostafakalhor about 1 month ago
Labels: bug

#152 - Patch/perc featues

Pull Request - State: closed - Opened by WassimG about 2 months ago

#151 - Fix/percolator features

Pull Request - State: closed - Opened by WassimG about 2 months ago - 1 comment

#150 - add proteins to base_columns

Pull Request - State: closed - Opened by WassimG about 2 months ago
Labels: bug

#149 - Bump version from 0.7.5 to 0.7.6

Pull Request - State: closed - Opened by WassimG about 2 months ago

#148 - Release/0.7.6

Pull Request - State: closed - Opened by WassimG about 2 months ago

#147 - Main

Pull Request - State: closed - Opened by WassimG about 2 months ago

#146 - Release/0.7.5

Pull Request - State: closed - Opened by WassimG about 2 months ago

#145 - Add proper protein ids to percolator

Pull Request - State: closed - Opened by WassimG about 2 months ago
Labels: bug

#144 - [DEPENDABOT]: Bump codecov/codecov-action from 4.5.0 to 4.6.0

Pull Request - State: closed - Opened by dependabot[bot] about 2 months ago
Labels: DEPENDABOT

#143 - [DEPENDABOT]: Bump pypa/gh-action-pypi-publish from 1.9.0 to 1.10.3

Pull Request - State: closed - Opened by dependabot[bot] about 2 months ago
Labels: DEPENDABOT

#142 - release/0.7.4

Pull Request - State: closed - Opened by WassimG about 2 months ago

#141 - Release/0.7.4

Pull Request - State: closed - Opened by WassimG about 2 months ago - 1 comment

#140 - Features/ptm pipeline

Pull Request - State: closed - Opened by WassimG 2 months ago
Labels: enhancement

#139 - [DEPENDABOT]: Bump pypa/gh-action-pypi-publish from 1.9.0 to 1.10.2

Pull Request - State: closed - Opened by dependabot[bot] 2 months ago - 1 comment
Labels: DEPENDABOT

#138 - [DEPENDABOT]: Bump pypa/gh-action-pypi-publish from 1.9.0 to 1.10.1

Pull Request - State: closed - Opened by dependabot[bot] 3 months ago - 1 comment
Labels: DEPENDABOT

#137 - [DEPENDABOT]: Bump actions/setup-python from 5.1.1 to 5.2.0

Pull Request - State: closed - Opened by dependabot[bot] 3 months ago
Labels: DEPENDABOT

#136 - [DEPENDABOT]: Bump pypa/gh-action-pypi-publish from 1.9.0 to 1.10.0

Pull Request - State: closed - Opened by dependabot[bot] 3 months ago - 1 comment
Labels: DEPENDABOT

#135 - Patch/0.7.3

Pull Request - State: closed - Opened by picciama 4 months ago

#134 - fixed mz calc with n_term mod

Pull Request - State: closed - Opened by picciama 4 months ago
Labels: bug

#133 - Fix/custom mods tokens

Pull Request - State: closed - Opened by FaBasso 4 months ago
Labels: bug

#132 - Feature/z radicals

Pull Request - State: closed - Opened by laralechner 4 months ago
Labels: enhancement

#131 - Add utilities required by Oktoberfest

Pull Request - State: closed - Opened by JSchlensok 4 months ago
Labels: enhancement

#130 - Patch/0.7.2

Pull Request - State: closed - Opened by picciama 4 months ago

#129 - Release/0.7.1

Pull Request - State: closed - Opened by picciama 4 months ago

#128 - added new internal_to_msp function

Pull Request - State: closed - Opened by picciama 4 months ago
Labels: enhancement

#127 - Release/0.7.0

Pull Request - State: closed - Opened by picciama 4 months ago

#126 - changed order of iontypes in preprocessing

Pull Request - State: closed - Opened by pfeifferpi 4 months ago
Labels: enhancement

#125 - [DEPENDABOT]: Bump pytest from 8.3.1 to 8.3.2

Pull Request - State: closed - Opened by dependabot[bot] 4 months ago
Labels: DEPENDABOT

#124 - [DEPENDABOT]: Bump pre-commit from 3.7.1 to 3.8.0

Pull Request - State: closed - Opened by dependabot[bot] 4 months ago
Labels: DEPENDABOT

#123 - [DEPENDABOT]: Bump pyupgrade from 3.16.0 to 3.17.0

Pull Request - State: closed - Opened by dependabot[bot] 4 months ago
Labels: DEPENDABOT

#122 - use custom columns as input features for percolator

Pull Request - State: closed - Opened by arne-vdb 4 months ago
Labels: enhancement

#121 - [DEPENDABOT]: Bump pytest from 8.2.2 to 8.3.1

Pull Request - State: closed - Opened by dependabot[bot] 4 months ago - 1 comment
Labels: DEPENDABOT

#120 - Feature/custom modifications

Pull Request - State: closed - Opened by FaBasso 5 months ago
Labels: enhancement

#119 - [DEPENDABOT]: Bump actions/setup-python from 5.1.0 to 5.1.1

Pull Request - State: closed - Opened by dependabot[bot] 5 months ago
Labels: DEPENDABOT

#118 - [DEPENDABOT]: Bump types-requests from 2.32.0.20240622 to 2.32.0.20240712

Pull Request - State: closed - Opened by dependabot[bot] 5 months ago
Labels: DEPENDABOT

#117 - [DEPENDABOT]: Bump coverage from 7.5.4 to 7.6.0

Pull Request - State: closed - Opened by dependabot[bot] 5 months ago
Labels: DEPENDABOT

#116 - Release/0.6.0

Pull Request - State: closed - Opened by picciama 5 months ago

#115 - [DEPENDABOT]: Bump safety from 3.2.3 to 3.2.4

Pull Request - State: closed - Opened by dependabot[bot] 5 months ago
Labels: DEPENDABOT

#114 - fix lda_failed and stablized RT alignment

Pull Request - State: closed - Opened by picciama 5 months ago
Labels: bug

#113 - [DEPENDABOT]: Update statsmodels requirement from <0.13.0,>=0.12.2 to >=0.14.2,<0.15.0

Pull Request - State: closed - Opened by dependabot[bot] 5 months ago - 1 comment
Labels: DEPENDABOT

#112 - Feature/add new iontypes

Pull Request - State: closed - Opened by laralechner 5 months ago
Labels: enhancement

#111 - [DEPENDABOT]: Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.9.0

Pull Request - State: closed - Opened by dependabot[bot] 5 months ago - 1 comment
Labels: DEPENDABOT

#110 - [DEPENDABOT]: Bump codecov/codecov-action from 3.1.1 to 4.5.0

Pull Request - State: closed - Opened by dependabot[bot] 5 months ago
Labels: DEPENDABOT

#109 - [DEPENDABOT]: Bump safety from 3.1.0 to 3.2.3

Pull Request - State: closed - Opened by dependabot[bot] 6 months ago - 2 comments
Labels: DEPENDABOT

#108 - [DEPENDABOT]: Bump joblib from 1.4.0 to 1.4.2

Pull Request - State: closed - Opened by dependabot[bot] 6 months ago
Labels: DEPENDABOT

#107 - [DEPENDABOT]: Bump safety from 3.1.0 to 3.2.0

Pull Request - State: closed - Opened by dependabot[bot] 6 months ago - 1 comment
Labels: DEPENDABOT

#106 - [DEPENDABOT]: Bump codecov/codecov-action from 3.1.1 to 4.4.1

Pull Request - State: closed - Opened by dependabot[bot] 6 months ago - 1 comment
Labels: DEPENDABOT

#105 - [DEPENDABOT]: Bump release-drafter/release-drafter from 5 to 6

Pull Request - State: closed - Opened by dependabot[bot] 6 months ago
Labels: DEPENDABOT

#104 - Patch/0.5.4

Pull Request - State: closed - Opened by picciama 6 months ago

#103 - Added PROTEINS column to meta data

Pull Request - State: closed - Opened by victorgiurcoiu 6 months ago
Labels: enhancement

#102 - Patch/sage mod mass

Pull Request - State: closed - Opened by picciama 7 months ago

#101 - initiate OpenMS support

Pull Request - State: open - Opened by Arslan-Siraj 7 months ago - 1 comment

#100 - [DEPENDABOT]: Bump black from 24.3.0 to 24.4.2

Pull Request - State: closed - Opened by dependabot[bot] 7 months ago
Labels: DEPENDABOT

#99 - [DEPENDABOT]: Bump black from 24.3.0 to 24.4.0

Pull Request - State: closed - Opened by dependabot[bot] 7 months ago - 1 comment
Labels: DEPENDABOT

#98 - [DEPENDABOT]: Bump actions/checkout from 2 to 4

Pull Request - State: closed - Opened by dependabot[bot] 7 months ago
Labels: DEPENDABOT

#97 - [DEPENDABOT]: Bump peaceiris/actions-gh-pages from 3 to 4

Pull Request - State: closed - Opened by dependabot[bot] 7 months ago
Labels: DEPENDABOT

#96 - Release/0.5.2

Pull Request - State: closed - Opened by picciama 8 months ago

#95 - Feature/ptm model support

Pull Request - State: closed - Opened by picciama 8 months ago
Labels: enhancement

#94 - [DEPENDABOT]: Bump actions/download-artifact from 3 to 4

Pull Request - State: closed - Opened by dependabot[bot] 8 months ago - 1 comment
Labels: DEPENDABOT

#93 - [DEPENDABOT]: Bump pypa/gh-action-pypi-publish from 1.6.4 to 1.8.14

Pull Request - State: closed - Opened by dependabot[bot] 8 months ago
Labels: DEPENDABOT

#92 - [DEPENDABOT]: Bump actions/setup-python from 4.3.0 to 5.1.0

Pull Request - State: closed - Opened by dependabot[bot] 8 months ago
Labels: DEPENDABOT

#91 - [DEPENDABOT]: Bump pytest-cov from 4.1.0 to 5.0.0

Pull Request - State: closed - Opened by dependabot[bot] 8 months ago
Labels: DEPENDABOT

#90 - [DEPENDABOT]: Update statsmodels requirement from <0.13.0,>=0.12.2 to >=0.12.2,<0.15.0

Pull Request - State: closed - Opened by dependabot[bot] 8 months ago - 2 comments
Labels: DEPENDABOT

#89 - [DEPENDABOT]: Bump pandas from 1.5.3 to 2.0.3

Pull Request - State: closed - Opened by dependabot[bot] 8 months ago
Labels: DEPENDABOT

#88 - [DEPENDABOT]: Bump actions/cache from 2.1.7 to 4.0.2

Pull Request - State: closed - Opened by dependabot[bot] 8 months ago
Labels: DEPENDABOT

#87 - Patch/0.5.1

Pull Request - State: closed - Opened by picciama 8 months ago

#86 - Xisearch to internal

Pull Request - State: closed - Opened by mostafakalhor 8 months ago

#85 - Feature/non cleavable xl

Pull Request - State: closed - Opened by mostafakalhor 8 months ago
Labels: enhancement

#84 - Feature/de duplication

Pull Request - State: open - Opened by karimwh 10 months ago
Labels: enhancement

#83 - Release/0.5.0

Pull Request - State: closed - Opened by picciama 12 months ago

#82 - Release/0.4.5

Pull Request - State: closed - Opened by picciama 12 months ago

#81 - Read instrument_type from mzml

Pull Request - State: closed - Opened by picciama 12 months ago
Labels: enhancement

#80 - Release/0.4.4

Pull Request - State: closed - Opened by picciama about 1 year ago

#79 - Feature/msfragger mods tmt

Pull Request - State: closed - Opened by picciama about 1 year ago
Labels: enhancement

#78 - added sage reversed unimod dictionary

Pull Request - State: closed - Opened by karimwh about 1 year ago
Labels: enhancement

#77 - Release/0.4.3

Pull Request - State: closed - Opened by picciama about 1 year ago

#76 - Fix/tmt modstring

Pull Request - State: closed - Opened by picciama about 1 year ago
Labels: bug

#75 - [DEPENDABOT]: Bump crazy-max/ghaction-github-labeler from 3.1.1 to 5.0.0

Pull Request - State: closed - Opened by dependabot[bot] about 1 year ago
Labels: DEPENDABOT

#74 - [DEPENDABOT]: Bump actions/cache from 2.1.7 to 3.3.2

Pull Request - State: closed - Opened by dependabot[bot] about 1 year ago - 2 comments
Labels: DEPENDABOT

#73 - [DEPENDABOT]: Bump crazy-max/ghaction-github-labeler from 3.1.1 to 4.2.0

Pull Request - State: closed - Opened by dependabot[bot] about 1 year ago - 1 comment
Labels: DEPENDABOT

#72 - Fix scannr collisions

Pull Request - State: closed - Opened by victorgiurcoiu about 1 year ago
Labels: bug

#71 - Release/0.4.2

Pull Request - State: closed - Opened by picciama over 1 year ago

#70 - Feature/mass tolerance from config

Pull Request - State: closed - Opened by picciama over 1 year ago
Labels: enhancement

#69 - Feature/documentation

Pull Request - State: closed - Opened by victorgiurcoiu over 1 year ago
Labels: enhancement, chore

#68 - [DEPENDABOT]: Bump scikit-learn from 1.1.2 to 1.3.0

Pull Request - State: closed - Opened by dependabot[bot] over 1 year ago - 2 comments
Labels: DEPENDABOT

#67 - [DEPENDABOT]: Bump pyupgrade from 3.0.0 to 3.8.0

Pull Request - State: closed - Opened by dependabot[bot] over 1 year ago - 2 comments
Labels: DEPENDABOT

#66 - [DEPENDABOT]: Bump pyupgrade from 3.0.0 to 3.7.0

Pull Request - State: closed - Opened by dependabot[bot] over 1 year ago - 1 comment
Labels: DEPENDABOT

#65 - Release/0.4.1

Pull Request - State: closed - Opened by picciama over 1 year ago

#64 - Feature/speed up annotation

Pull Request - State: closed - Opened by picciama over 1 year ago
Labels: enhancement

#63 - Bump version from 0.3.2 to 0.4.0

Pull Request - State: closed - Opened by picciama over 1 year ago

#62 - Release/0.3.2

Pull Request - State: closed - Opened by picciama over 1 year ago

#61 - Fix/column name percolator

Pull Request - State: closed - Opened by picciama over 1 year ago
Labels: bug

#60 - Added rt to MZML_ONLY_DATA_COLUMNS constant

Pull Request - State: closed - Opened by victorgiurcoiu over 1 year ago
Labels: enhancement

#59 - Not compatible with percolator 3.06

Issue - State: closed - Opened by picciama over 1 year ago
Labels: bug

#58 - Fixed type of curve_fitting_method, regression method, added type check

Pull Request - State: closed - Opened by victorgiurcoiu over 1 year ago
Labels: bug

#57 - Feature/annotations tests

Pull Request - State: closed - Opened by picciama over 1 year ago
Labels: enhancement

#56 - Release/0.3.1

Pull Request - State: closed - Opened by picciama over 1 year ago

#55 - Feature/unit tests

Pull Request - State: closed - Opened by picciama over 1 year ago
Labels: enhancement

GitHub / wilhelm-lab/spectrum_fundamentals issues and pull requests