wilhelm-lab/koina issues and pull requests

#131 - Add prosit PTM model for prosimsit

Pull Request - State: open - Opened by WassimG 7 days ago

#130 - Fix CI

Pull Request - State: closed - Opened by LLautenbacher 26 days ago
Labels: patch

#129 - Add MS2PIP model descriptions

Pull Request - State: closed - Opened by RalfG about 1 month ago
Labels: patch

#128 - Added 3dmolms models.

Pull Request - State: closed - Opened by LLautenbacher about 1 month ago
Labels: patch

#127 - New testing scheme

Pull Request - State: closed - Opened by ErBarb about 1 month ago
Labels: patch

#126 - Added arrays for new testing scheme

Pull Request - State: closed - Opened by ErBarb about 1 month ago

#125 - Erald/feature/nms2

Pull Request - State: closed - Opened by LLautenbacher about 1 month ago
Labels: patch

#124 - Feature/trigger cd

Pull Request - State: closed - Opened by LLautenbacher about 1 month ago
Labels: patch, python-client

#123 - Add Chronologer.

Pull Request - State: closed - Opened by LLautenbacher about 1 month ago
Labels: patch

#122 - Feature/prosit cit

Pull Request - State: closed - Opened by WassimG about 1 month ago

#121 - Fix ms2pip version.

Pull Request - State: closed - Opened by LLautenbacher about 1 month ago
Labels: docs

#120 - Setting up development server

Issue - State: closed - Opened by yangkl96 about 1 month ago - 1 comment

#119 - Update IM2Deep documentation

Pull Request - State: closed - Opened by rodvrees about 2 months ago

#118 - Update notes.yaml DeepLC

Pull Request - State: closed - Opened by RobbinBouwmeester about 2 months ago

#117 - OpenAPI document doesnt adhere to standard

Issue - State: closed - Opened by tkschmidt about 2 months ago - 1 comment

#116 - UniSpec error on tutorial page

Issue - State: closed - Opened by yangkl96 about 2 months ago - 1 comment

#115 - limit of batch size

Issue - State: closed - Opened by heejongkim 2 months ago - 7 comments

#114 - Update UI

Pull Request - State: closed - Opened by LLautenbacher 3 months ago
Labels: docs

#113 - Fixed control statements in NCE2eV subroutine. Now all instrument

Pull Request - State: closed - Opened by jlapin1 3 months ago
Labels: patch

#112 - Update UniSpec documentation

Pull Request - State: closed - Opened by LLautenbacher 3 months ago
Labels: docs

#111 - Archive/unispec

Pull Request - State: closed - Opened by jlapin1 3 months ago - 1 comment

#110 - UniSpec with QE charge 1 predictions not supported

Issue - State: closed - Opened by yangkl96 3 months ago - 2 comments

#109 - Changed the name usprocess to UniSpec

Pull Request - State: closed - Opened by jlapin1 3 months ago
Labels: patch

#108 - fixed race condition in retry mechanism

Pull Request - State: closed - Opened by picciama 3 months ago - 1 comment
Labels: python-client

#107 - Tolerate Errors during prerendering.

Pull Request - State: closed - Opened by LLautenbacher 3 months ago
Labels: docs

#106 - 3dmolms

Pull Request - State: closed - Opened by mwang87 3 months ago

#105 - Fix/startup speed, update UI & fix linting

Pull Request - State: closed - Opened by LLautenbacher 3 months ago
Labels: patch

#104 - Fix UI display of usprocess

Pull Request - State: closed - Opened by LLautenbacher 4 months ago
Labels: docs

#103 - Fix unispec notes.yaml

Pull Request - State: closed - Opened by LLautenbacher 4 months ago
Labels: docs

#102 - Add fine-tuned Prosit model on non-cleavable crosslinked peptides

Pull Request - State: closed - Opened by ErBarb 4 months ago
Labels: patch

#101 - Add more ms2pip models & IM2Deep

Pull Request - State: closed - Opened by LLautenbacher 4 months ago
Labels: patch, python-client

#100 - Reorg for CPU hosting

Pull Request - State: open - Opened by mwang87 4 months ago

#99 - Add checksum verification for zenodo downloads.

Pull Request - State: closed - Opened by LLautenbacher 4 months ago
Labels: patch

#98 - Add unispec to Koina

Pull Request - State: closed - Opened by LLautenbacher 5 months ago
Labels: patch

#97 - koinapy Prosit TypeError: 'numpy.ndarray' object is not callable

Issue - State: closed - Opened by trvadams 5 months ago - 9 comments

#96 - Compare spectrum fixes

Pull Request - State: closed - Opened by Moomboh 6 months ago
Labels: docs

#95 - fix(compare): correct pep seq for mirror spectrum

Pull Request - State: closed - Opened by Moomboh 6 months ago
Labels: docs

#94 - Fix failing frontend build

Pull Request - State: closed - Opened by Moomboh 6 months ago
Labels: docs

#93 - Spectrum Comparison & UI improvements

Pull Request - State: closed - Opened by Moomboh 6 months ago
Labels: docs

#92 - Feature/df output

Pull Request - State: closed - Opened by LLautenbacher 6 months ago
Labels: python-client

#91 - Update version.

Pull Request - State: closed - Opened by LLautenbacher 6 months ago
Labels: python-client

#90 - Hotfix progress bar.

Pull Request - State: closed - Opened by LLautenbacher 6 months ago
Labels: docs, python-client

#89 - Add new prediction mode to prevent overloading with multiprocessing.

Pull Request - State: closed - Opened by LLautenbacher 6 months ago
Labels: python-client

#88 - Feature/add code examples

Pull Request - State: closed - Opened by LLautenbacher 6 months ago
Labels: docs

#87 - denovo peptide sequencing

Issue - State: open - Opened by wenbostar 7 months ago - 1 comment

#86 - chore: update biowc-spectrum to 0.0.3

Pull Request - State: closed - Opened by Moomboh 7 months ago
Labels: docs

#85 - biowc-spectrum integration

Pull Request - State: closed - Opened by Moomboh 7 months ago
Labels: docs

#84 - Hotfix/silent crash

Pull Request - State: closed - Opened by LLautenbacher 7 months ago
Labels: patch

#83 - Docker Connection Error

Issue - State: closed - Opened by InfiniGeorges 7 months ago - 3 comments

#82 - Feature/rclient

Pull Request - State: closed - Opened by cpanse 7 months ago

#81 - Feature/rclient

Pull Request - State: closed - Opened by cpanse 8 months ago
Labels: docs

#80 - Feature/rclient

Pull Request - State: closed - Opened by cpanse 8 months ago
Labels: docs

#79 - Feature/improve usi proxy

Pull Request - State: closed - Opened by LLautenbacher 8 months ago
Labels: patch

#78 - Fix proxy not working with compressed requests.

Pull Request - State: closed - Opened by LLautenbacher 8 months ago
Labels: patch

#77 - Add USI proxy

Pull Request - State: closed - Opened by LLautenbacher 8 months ago
Labels: patch

#76 - Fix performance issues of fragment_mz model

Pull Request - State: closed - Opened by LLautenbacher 8 months ago
Labels: patch

#75 - Update pypi metadata.

Pull Request - State: closed - Opened by LLautenbacher 9 months ago
Labels: python-client

#74 - Fix AlphaPept instrument_types embedding

Pull Request - State: closed - Opened by LLautenbacher 9 months ago
Labels: patch, python-client

#73 - Fix/remove logging

Pull Request - State: closed - Opened by LLautenbacher 9 months ago
Labels: patch

#72 - Don't judge me

Pull Request - State: closed - Opened by LLautenbacher 9 months ago - 2 comments
Labels: docs

#71 - Fix UI CI

Pull Request - State: closed - Opened by LLautenbacher 9 months ago
Labels: docs

#70 - Update permissions

Pull Request - State: closed - Opened by LLautenbacher 9 months ago
Labels: patch

#69 - Update devcontainer, testing-framework and UI

Pull Request - State: closed - Opened by LLautenbacher 9 months ago
Labels: patch, python-client

#68 - Fix workflow syntax

Pull Request - State: closed - Opened by LLautenbacher 9 months ago
Labels: python-client

#67 - Feature/python client package

Pull Request - State: closed - Opened by LLautenbacher 9 months ago
Labels: python-client

#66 - Modifications don't change fragment masses

Issue - State: closed - Opened by ChrisMcGann 10 months ago - 2 comments

#65 - Changing intrument type doesn't work

Issue - State: closed - Opened by KaiLiCn 11 months ago - 2 comments

#64 - Wrong predicted spectra for modified peptides

Issue - State: closed - Opened by KaiLiCn 11 months ago - 2 comments

#63 - Unispec

Pull Request - State: closed - Opened by jlapin1 11 months ago

#62 - Feature/xl koina

Pull Request - State: closed - Opened by mostafakalhor 11 months ago
Labels: patch

#61 - Fix startup when no pattern is provided.

Pull Request - State: closed - Opened by LLautenbacher 11 months ago
Labels: patch

#60 - WIP | Feature/koina xl

Pull Request - State: closed - Opened by LLautenbacher 12 months ago
Labels: patch

#59 - Feature/customize startup

Pull Request - State: closed - Opened by LLautenbacher about 1 year ago
Labels: patch

#58 - Fix userns mode

Pull Request - State: closed - Opened by LLautenbacher about 1 year ago
Labels: docs

#57 - Fix mod encoding

Pull Request - State: closed - Opened by LLautenbacher about 1 year ago
Labels: patch

#56 - Build docker image on self hosted runner

Pull Request - State: closed - Opened by LLautenbacher about 1 year ago
Labels: patch

#55 - Fix AlphaPept terminal mod encoding

Pull Request - State: closed - Opened by LLautenbacher about 1 year ago
Labels: patch

#54 - Feature/improve encodings

Pull Request - State: closed - Opened by LLautenbacher about 1 year ago
Labels: patch

#53 - Fix documentation

Pull Request - State: closed - Opened by LLautenbacher about 1 year ago
Labels: docs