widdowquinn/teaching-ibioic-intro-to-bioinformatics issues and pull requests

#63 - Licence choice

Issue - State: open - Opened by widdowquinn over 7 years ago - 1 comment

#62 - Single quotes vs double quotes in Python code examples?

Issue - State: open - Opened by peterjc over 7 years ago - 1 comment
Labels: question

#61 - Add comment about Dockerfile being for MyBinder

Pull Request - State: closed - Opened by peterjc over 7 years ago

#60 - Ask for tabular (not CSV) to match previous exercise.

Pull Request - State: closed - Opened by peterjc over 7 years ago

#59 - Avoid os.path.join and missing output directory

Pull Request - State: closed - Opened by peterjc over 7 years ago - 2 comments

#58 - Single top level copy of branding images

Pull Request - State: closed - Opened by peterjc over 7 years ago - 1 comment

#57 - Skipped named columns from UniProt?

Issue - State: open - Opened by peterjc over 7 years ago - 3 comments
Labels: question

#56 - Gravity Wave notebook as reproducible science example

Issue - State: open - Opened by peterjc over 7 years ago - 1 comment
Labels: enhancement

#55 - Calling QBLAST with sequence vs FASTA entry?

Issue - State: open - Opened by peterjc over 7 years ago - 2 comments
Labels: question

#54 - Tabular vs CSV in BLAST at terminal lesson?

Issue - State: closed - Opened by peterjc over 7 years ago - 1 comment
Labels: question

#53 - MyBinder and Python 3 vs Python 3 (IBioIC)

Issue - State: open - Opened by peterjc over 7 years ago - 1 comment
Labels: enhancement

#52 - Missing directory for Excel download?

Issue - State: closed - Opened by peterjc over 7 years ago - 2 comments

#51 - Show all models in JMol via scripting?

Issue - State: open - Opened by peterjc over 7 years ago
Labels: enhancement, question

#50 - Recentre region selections in JMol

Issue - State: open - Opened by widdowquinn over 7 years ago
Labels: enhancement

#49 - Avoid os.path.join(...) for beginners?

Issue - State: open - Opened by peterjc over 7 years ago - 1 comment
Labels: enhancement, question

#48 - Static port numbers per student account for Juypter?

Issue - State: open - Opened by peterjc over 7 years ago
Labels: enhancement

#47 - Shorter path for main folder?

Issue - State: open - Opened by peterjc over 7 years ago - 1 comment
Labels: enhancement

#46 - Presentation pacing

Issue - State: open - Opened by widdowquinn over 7 years ago
Labels: enhancement

#45 - Morning fixes

Pull Request - State: closed - Opened by peterjc over 7 years ago

#44 - Add an introduction to what bioinformatics is

Issue - State: open - Opened by widdowquinn over 7 years ago
Labels: enhancement

#43 - More Python basics

Pull Request - State: closed - Opened by peterjc over 7 years ago

#42 - Add reproducible research slides

Pull Request - State: closed - Opened by widdowquinn over 7 years ago

#41 - Change focus of course examples

Issue - State: open - Opened by widdowquinn over 7 years ago
Labels: enhancement

#40 - Rearranging and expanding Python basics

Pull Request - State: closed - Opened by peterjc over 7 years ago

#39 - Short MSA example and updating index

Pull Request - State: closed - Opened by peterjc over 7 years ago

#38 - Translation

Pull Request - State: closed - Opened by peterjc over 7 years ago

#37 - 04 section

Pull Request - State: closed - Opened by sj39 over 7 years ago

#36 - Artemis

Pull Request - State: closed - Opened by peterjc over 7 years ago

#35 - Structure lesson reformat

Pull Request - State: closed - Opened by widdowquinn over 7 years ago

#34 - 04 structure

Pull Request - State: closed - Opened by sj39 over 7 years ago

#33 - 04 structure

Pull Request - State: closed - Opened by sj39 over 7 years ago

#32 - Using Pectobacterium carotovorum for FASTA/GenBank example

Pull Request - State: closed - Opened by peterjc over 7 years ago

#31 - 04 structure

Pull Request - State: closed - Opened by sj39 over 7 years ago

#30 - 04 structure

Pull Request - State: closed - Opened by sj39 over 7 years ago

#29 - 04 structure

Pull Request - State: closed - Opened by widdowquinn over 7 years ago

#28 - Introducing FASTA and GenBank Formats

Pull Request - State: closed - Opened by peterjc over 7 years ago

#27 - Remove symlinks

Pull Request - State: closed - Opened by peterjc over 7 years ago

#26 - Updates surrounding the input files

Pull Request - State: closed - Opened by widdowquinn over 7 years ago

#25 - add example output for safety/demos

Pull Request - State: closed - Opened by widdowquinn over 7 years ago

#24 - Lipase

Pull Request - State: closed - Opened by widdowquinn over 7 years ago

#23 - Symlink images don't show in GitHub notebook renders

Issue - State: closed - Opened by widdowquinn over 7 years ago
Labels: enhancement

#22 - Linux introduction

Pull Request - State: closed - Opened by peterjc over 7 years ago

#21 - Introducing Linux and remote access

Pull Request - State: closed - Opened by peterjc over 7 years ago

#20 - Typos

Pull Request - State: closed - Opened by widdowquinn over 7 years ago

#19 - Ensembl

Pull Request - State: closed - Opened by widdowquinn over 7 years ago

#18 - VM setup

Pull Request - State: closed - Opened by widdowquinn over 7 years ago

#17 - Tweaks for setting up the user accounts on the VM

Pull Request - State: closed - Opened by peterjc over 7 years ago - 2 comments

#16 - Juggling paths

Pull Request - State: closed - Opened by peterjc over 7 years ago

#15 - TBLASTN of wildtype and engineered lipase

Pull Request - State: closed - Opened by peterjc over 7 years ago

#14 - Merge new files in Section 03

Pull Request - State: closed - Opened by widdowquinn over 7 years ago

#13 - Section 02

Pull Request - State: closed - Opened by widdowquinn over 7 years ago

#12 - Parsing GenBank and doing translations

Pull Request - State: closed - Opened by peterjc over 7 years ago

#11 - Merge Section 03

Pull Request - State: closed - Opened by widdowquinn over 7 years ago

#10 - Assume cloning git repo directly under HOME.

Pull Request - State: closed - Opened by peterjc over 7 years ago - 2 comments

#9 - Fetching files from Genbank, using Artemis, etc

Pull Request - State: closed - Opened by peterjc over 7 years ago - 2 comments

#8 - Fix main index notebooks URLs

Pull Request - State: closed - Opened by peterjc almost 8 years ago - 1 comment

#7 - Introducing the sequences (work in progress)

Pull Request - State: closed - Opened by peterjc almost 8 years ago - 2 comments

#6 - TravisCI testing (work in progress)

Pull Request - State: closed - Opened by peterjc almost 8 years ago - 3 comments
Labels: help wanted

#5 - Link install-apps.sh into Dockerfile

Pull Request - State: closed - Opened by peterjc almost 8 years ago - 1 comment

#4 - Try installing latest NCBI BLAST+ 2.6.0 via conda

Pull Request - State: closed - Opened by peterjc almost 8 years ago - 2 comments
Labels: question

#3 - Merging Section 02 with new UniProt lesson

Pull Request - State: closed - Opened by widdowquinn almost 8 years ago

#2 - Merge section-02 with master for UniProt browser lesson

Pull Request - State: closed - Opened by widdowquinn almost 8 years ago

#1 - Section 02 : merging section 02

Pull Request - State: closed - Opened by sj39 almost 8 years ago

GitHub / widdowquinn/teaching-ibioic-intro-to-bioinformatics issues and pull requests