Ecosyste.ms: Issues
An open API service for providing issue and pull request metadata for open source projects.
GitHub / widdowquinn/find_differential_primers issues and pull requests
#60 - Problem with setup.py in 0.1.4 stable release: NameError: name 'version' is not defined at line 32
Issue -
State: open - Opened by davidjstudholme 11 months ago
#59 - importlib.metadata.PackageNotFoundError: No package metadata was found for diagnostic-primers
Issue -
State: open - Opened by davidjstudholme 11 months ago
#58 - Small error in documentation file: docs/quickstart.rst
Issue -
State: open - Opened by davidjstudholme 11 months ago
#57 - Simple method for providing more params to blastn
Pull Request -
State: open - Opened by nick-youngblut almost 4 years ago
#56 - added ArgumentDefaultsHelpFormatter to all parsers
Pull Request -
State: closed - Opened by nick-youngblut almost 4 years ago
- 3 comments
#55 - parameter defaults
Issue -
State: closed - Opened by nick-youngblut almost 4 years ago
- 13 comments
Labels: question, enhancement, unable to reproduce
#54 - conda commands
Issue -
State: closed - Opened by maguileraf almost 4 years ago
- 3 comments
Labels: question
#53 - Problems with use of pdp
Issue -
State: open - Opened by aiqubo almost 4 years ago
- 3 comments
Labels: bug, installation
#52 - Clarify documentation regarding pdp/find_differential_primer versions
Issue -
State: open - Opened by widdowquinn almost 4 years ago
Labels: enhancement, documentation
#51 - Problems with installation of Find differential Primers on Ubuntu
Issue -
State: closed - Opened by J123T almost 4 years ago
- 6 comments
Labels: question, bug, documentation
#50 - Fix broken bioconda recipe
Issue -
State: closed - Opened by widdowquinn almost 4 years ago
- 2 comments
Labels: bug
#49 - conda install pdp not working
Issue -
State: closed - Opened by rsiani about 4 years ago
- 1 comment
Labels: question
#48 - is pdp still available?
Issue -
State: closed - Opened by AlexGaithuma over 4 years ago
- 1 comment
Labels: question
#47 - Use `mypy` to aid with type checking
Issue -
State: open - Opened by widdowquinn almost 5 years ago
Labels: style clean
#46 - Add `pdp config` option to take `pyani download` output and create a config file.
Issue -
State: open - Opened by widdowquinn almost 5 years ago
Labels: enhancement
#45 - Put user documentation on ReadTheDocs
Issue -
State: open - Opened by widdowquinn almost 5 years ago
Labels: enhancement, documentation
#44 - Add option to multiplex primers
Issue -
State: open - Opened by widdowquinn almost 5 years ago
Labels: enhancement
#43 - Update logging exception formats
Issue -
State: open - Opened by widdowquinn almost 5 years ago
Labels: style clean, enhancement
#42 - Add option to use online Primer-BLAST for off-target screening
Issue -
State: open - Opened by widdowquinn almost 5 years ago
Labels: enhancement
#41 - Supply Flask interface/API onto SQLite backend
Issue -
State: open - Opened by widdowquinn almost 5 years ago
Labels: enhancement
#40 - Store primer design information in SQLite backend
Issue -
State: open - Opened by widdowquinn almost 5 years ago
Labels: enhancement
#39 - Stage third-party tool output in a temp directory for checking
Issue -
State: open - Opened by widdowquinn over 5 years ago
Labels: enhancement
#38 - Add `--recovery` option to schedulable subcommands
Pull Request -
State: closed - Opened by widdowquinn over 5 years ago
- 2 comments
#37 - Add `--recovery` option to subcommands
Issue -
State: closed - Opened by widdowquinn over 5 years ago
- 1 comment
Labels: enhancement
#36 - Primer3 v2
Pull Request -
State: closed - Opened by widdowquinn over 5 years ago
- 1 comment
#35 - refactor parsers for `pdp` subcommands into individual `.py` files
Pull Request -
State: closed - Opened by widdowquinn almost 6 years ago
#34 - Fixes #32 and #33
Pull Request -
State: closed - Opened by widdowquinn almost 6 years ago
- 1 comment
#33 - Add diversity measure to output of `pdp extract`
Issue -
State: closed - Opened by widdowquinn almost 6 years ago
- 1 comment
Labels: enhancement
#32 - Add filter option that targets variable regions within a single class
Issue -
State: closed - Opened by widdowquinn almost 6 years ago
- 1 comment
Labels: enhancement
#31 - Add filter option that restricts primer design to regions specific to a target class
Issue -
State: open - Opened by widdowquinn almost 6 years ago
- 1 comment
Labels: enhancement
#30 - Replace `ePrimer3` with modern Primer3 (v2+)
Issue -
State: closed - Opened by widdowquinn almost 6 years ago
- 4 comments
Labels: enhancement
#29 - Use read mapper as alternative to `PrimerSearch`
Issue -
State: open - Opened by widdowquinn almost 6 years ago
- 8 comments
Labels: enhancement
#28 - Add primer location output for use with IGV
Issue -
State: closed - Opened by widdowquinn almost 6 years ago
- 1 comment
Labels: enhancement
#27 - Progress bar formatting in `pdp config` is not right
Issue -
State: closed - Opened by widdowquinn almost 6 years ago
- 2 comments
Labels: bug
#26 - Filter subcommand
Pull Request -
State: closed - Opened by widdowquinn about 6 years ago
- 1 comment
#25 - Filter subcommand
Pull Request -
State: closed - Opened by widdowquinn about 6 years ago
#24 - Refactor extract
Pull Request -
State: closed - Opened by widdowquinn about 6 years ago
- 1 comment
Labels: enhancement
#23 - Some predicted primers have runs of `N` in the amplicons
Issue -
State: open - Opened by widdowquinn over 6 years ago
Labels: enhancement
#22 - If ePrimer3 does not generate primers, the pipeline hangs
Issue -
State: open - Opened by widdowquinn over 6 years ago
Labels: bug
#21 - Tag new release?
Issue -
State: open - Opened by druvus over 6 years ago
- 5 comments
Labels: enhancement
#20 - Docs
Pull Request -
State: closed - Opened by widdowquinn over 6 years ago
#19 - Extend tests
Pull Request -
State: closed - Opened by widdowquinn over 6 years ago
#18 - Tools test
Pull Request -
State: closed - Opened by widdowquinn over 6 years ago
- 1 comment
#17 - add primersearch code
Pull Request -
State: closed - Opened by widdowquinn almost 7 years ago
- 1 comment
#16 - Extend tests
Pull Request -
State: closed - Opened by widdowquinn almost 7 years ago
- 1 comment
#15 - modifications for config command
Pull Request -
State: closed - Opened by widdowquinn almost 7 years ago
- 1 comment
Labels: style clean, enhancement
#14 - ValueError: Your XML file did not start with <?xml... but instead '\n'
Issue -
State: open - Opened by BioJNO about 7 years ago
- 1 comment
Labels: bug
#13 - Eprimer3 test
Pull Request -
State: closed - Opened by widdowquinn over 7 years ago
- 1 comment
Labels: bugfix
#12 - Eprimer3 test
Pull Request -
State: closed - Opened by widdowquinn over 7 years ago
- 1 comment
#11 - Add ePrimer3 tests
Pull Request -
State: closed - Opened by widdowquinn over 7 years ago
- 1 comment
Labels: bugfix, tests
#10 - Add tests
Pull Request -
State: closed - Opened by widdowquinn over 7 years ago
- 1 comment
Labels: tests
#9 - Add blastscreen tests
Pull Request -
State: closed - Opened by widdowquinn over 7 years ago
- 1 comment
#8 - Fix cmdline tests
Pull Request -
State: closed - Opened by widdowquinn over 7 years ago
- 1 comment
Labels: refactor, tests
#7 - Config to json
Pull Request -
State: closed - Opened by widdowquinn over 7 years ago
- 1 comment
Labels: refactor, style clean, tests
#6 - Refactor script
Pull Request -
State: closed - Opened by widdowquinn over 7 years ago
- 3 comments
Labels: refactor, style clean
#5 - update test suite
Pull Request -
State: closed - Opened by widdowquinn over 7 years ago
- 1 comment
Labels: refactor, style clean, tests
#4 - Add debugging code explanantion
Issue -
State: closed - Opened by wjidea about 11 years ago
- 3 comments
#3 - Minor fixes
Pull Request -
State: closed - Opened by mikerobeson over 11 years ago
#2 - Merged dev branch to master, mod to pull request.
Pull Request -
State: closed - Opened by cometsong about 12 years ago
#1 - Dev update
Pull Request -
State: closed - Opened by cometsong about 12 years ago