Ecosyste.ms: Issues

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GitHub / wheretrue/exon issues and pull requests

#490 - build(deps): bump serde from 1.0.198 to 1.0.199

Pull Request - State: closed - Opened by dependabot[bot] 7 months ago
Labels: dependencies

#490 - build(deps): bump serde from 1.0.198 to 1.0.199

Pull Request - State: closed - Opened by dependabot[bot] 7 months ago
Labels: dependencies

#490 - build(deps): bump serde from 1.0.198 to 1.0.199

Pull Request - State: closed - Opened by dependabot[bot] 7 months ago
Labels: dependencies

#489 - build(deps): bump flate2 from 1.0.28 to 1.0.29

Pull Request - State: closed - Opened by dependabot[bot] 7 months ago
Labels: dependencies

#489 - build(deps): bump flate2 from 1.0.28 to 1.0.29

Pull Request - State: closed - Opened by dependabot[bot] 7 months ago
Labels: dependencies

#489 - build(deps): bump flate2 from 1.0.28 to 1.0.29

Pull Request - State: closed - Opened by dependabot[bot] 7 months ago
Labels: dependencies

#489 - build(deps): bump flate2 from 1.0.28 to 1.0.29

Pull Request - State: closed - Opened by dependabot[bot] 7 months ago
Labels: dependencies

#489 - build(deps): bump flate2 from 1.0.28 to 1.0.29

Pull Request - State: closed - Opened by dependabot[bot] 7 months ago
Labels: dependencies

#489 - build(deps): bump flate2 from 1.0.28 to 1.0.29

Pull Request - State: closed - Opened by dependabot[bot] 7 months ago
Labels: dependencies

#489 - build(deps): bump flate2 from 1.0.28 to 1.0.29

Pull Request - State: closed - Opened by dependabot[bot] 7 months ago
Labels: dependencies

#489 - build(deps): bump flate2 from 1.0.28 to 1.0.29

Pull Request - State: closed - Opened by dependabot[bot] 7 months ago
Labels: dependencies

#489 - build(deps): bump flate2 from 1.0.28 to 1.0.29

Pull Request - State: closed - Opened by dependabot[bot] 7 months ago
Labels: dependencies

#488 - feat: update vcf table options

Pull Request - State: closed - Opened by tshauck 7 months ago

#488 - feat: update vcf table options

Pull Request - State: closed - Opened by tshauck 7 months ago

#488 - feat: update vcf table options

Pull Request - State: closed - Opened by tshauck 7 months ago

#488 - feat: update vcf table options

Pull Request - State: closed - Opened by tshauck 7 months ago

#488 - feat: update vcf table options

Pull Request - State: closed - Opened by tshauck 7 months ago

#488 - feat: update vcf table options

Pull Request - State: closed - Opened by tshauck 7 months ago

#488 - feat: update vcf table options

Pull Request - State: closed - Opened by tshauck 7 months ago

#488 - feat: update vcf table options

Pull Request - State: closed - Opened by tshauck 7 months ago

#455 - Update to 372

Pull Request - State: closed - Opened by tshauck 8 months ago

#100 - build: update deps

Pull Request - State: closed - Opened by tshauck over 1 year ago

#99 - build(deps): bump async-trait from 0.1.72 to 0.1.73

Pull Request - State: closed - Opened by dependabot[bot] over 1 year ago
Labels: dependencies

#98 - build(deps): bump tokio from 1.30.0 to 1.31.0

Pull Request - State: closed - Opened by dependabot[bot] over 1 year ago
Labels: dependencies

#97 - build(deps): bump tokio from 1.29.1 to 1.30.0

Pull Request - State: closed - Opened by dependabot[bot] over 1 year ago
Labels: dependencies

#96 - build(deps): bump clap from 4.3.19 to 4.3.21

Pull Request - State: closed - Opened by dependabot[bot] over 1 year ago
Labels: dependencies

#95 - build(deps): bump pin-project from 1.1.2 to 1.1.3

Pull Request - State: closed - Opened by dependabot[bot] over 1 year ago
Labels: dependencies

#94 - build(deps): bump serde from 1.0.181 to 1.0.183

Pull Request - State: closed - Opened by dependabot[bot] over 1 year ago
Labels: dependencies

#93 - build(deps): bump aws-config from 0.55.3 to 0.56.0

Pull Request - State: closed - Opened by dependabot[bot] over 1 year ago - 1 comment
Labels: dependencies

#92 - build(deps): bump noodles from 0.46.0 to 0.47.0

Pull Request - State: closed - Opened by dependabot[bot] over 1 year ago
Labels: dependencies

#91 - build(deps): bump aws-credential-types from 0.55.3 to 0.56.0

Pull Request - State: closed - Opened by dependabot[bot] over 1 year ago - 1 comment
Labels: dependencies

#90 - build(deps): bump serde from 1.0.180 to 1.0.181

Pull Request - State: closed - Opened by dependabot[bot] over 1 year ago
Labels: dependencies

#89 - feat: add mzml to R

Pull Request - State: closed - Opened by tshauck over 1 year ago

#88 - build(deps): bump serde from 1.0.179 to 1.0.180

Pull Request - State: closed - Opened by dependabot[bot] over 1 year ago
Labels: dependencies

#87 - build(deps): bump sqllogictest from 0.14.0 to 0.15.2

Pull Request - State: closed - Opened by dependabot[bot] over 1 year ago - 1 comment
Labels: dependencies

#86 - feat: add config with smarter defaults

Pull Request - State: closed - Opened by tshauck over 1 year ago

#85 - feat: add file-parallelism to other files

Pull Request - State: closed - Opened by tshauck over 1 year ago

#84 - build(deps): bump serde from 1.0.177 to 1.0.179

Pull Request - State: closed - Opened by dependabot[bot] over 1 year ago
Labels: dependencies

#83 - feat: add fasta parallelism

Pull Request - State: closed - Opened by tshauck over 1 year ago

#82 - Update df

Pull Request - State: closed - Opened by tshauck over 1 year ago

#81 - feat: fixes from mzml pocs

Pull Request - State: closed - Opened by tshauck over 1 year ago

#80 - feat: contains peak filter

Pull Request - State: closed - Opened by tshauck over 1 year ago

#79 - build(deps): bump serde from 1.0.175 to 1.0.177

Pull Request - State: closed - Opened by dependabot[bot] over 1 year ago
Labels: dependencies

#78 - build(deps): bump noodles from 0.45.0 to 0.46.0

Pull Request - State: closed - Opened by dependabot[bot] over 1 year ago
Labels: dependencies

#77 - build(deps): bump serde from 1.0.175 to 1.0.176

Pull Request - State: closed - Opened by dependabot[bot] over 1 year ago - 1 comment
Labels: dependencies

#76 - build(deps): bump sqllogictest from 0.14.0 to 0.15.1

Pull Request - State: closed - Opened by dependabot[bot] over 1 year ago - 1 comment
Labels: dependencies

#75 - feat: adding initial setup for exome service

Pull Request - State: closed - Opened by tshauck over 1 year ago

#74 - build(deps): bump serde from 1.0.174 to 1.0.175

Pull Request - State: closed - Opened by dependabot[bot] over 1 year ago
Labels: dependencies

#73 - build(deps): bump clap from 4.3.17 to 4.3.19

Pull Request - State: closed - Opened by dependabot[bot] over 1 year ago
Labels: dependencies

#72 - build(deps): bump quick-xml from 0.29.0 to 0.30.0

Pull Request - State: closed - Opened by dependabot[bot] over 1 year ago
Labels: dependencies

#71 - build: add windows test

Pull Request - State: closed - Opened by tshauck over 1 year ago

#70 - build: bump noodles to latest

Pull Request - State: closed - Opened by tshauck over 1 year ago

#69 - build(deps): bump serde from 1.0.173 to 1.0.174

Pull Request - State: closed - Opened by dependabot[bot] over 1 year ago
Labels: dependencies

#68 - build(deps): bump async-trait from 0.1.71 to 0.1.72

Pull Request - State: closed - Opened by dependabot[bot] over 1 year ago
Labels: dependencies

#67 - build(deps): bump noodles from 0.44.0 to 0.45.0

Pull Request - State: closed - Opened by dependabot[bot] over 1 year ago - 1 comment
Labels: dependencies

#66 - build(deps): bump serde from 1.0.171 to 1.0.173

Pull Request - State: closed - Opened by dependabot[bot] over 1 year ago
Labels: dependencies

#65 - build(deps): bump sqllogictest from 0.14.0 to 0.15.0

Pull Request - State: closed - Opened by dependabot[bot] over 1 year ago - 1 comment
Labels: dependencies

#64 - build(deps): bump clap from 4.3.16 to 4.3.17

Pull Request - State: closed - Opened by dependabot[bot] over 1 year ago
Labels: dependencies

#63 - feat: allow some missing mzml fields

Pull Request - State: closed - Opened by tshauck over 1 year ago

#62 - feat: add udfs

Pull Request - State: closed - Opened by tshauck over 1 year ago

#61 - build(deps): bump clap from 4.3.15 to 4.3.16

Pull Request - State: closed - Opened by dependabot[bot] over 1 year ago
Labels: dependencies

#60 - feat: add mass spec binning

Pull Request - State: closed - Opened by tshauck over 1 year ago

#59 - build(deps): bump clap from 4.3.12 to 4.3.15

Pull Request - State: closed - Opened by dependabot[bot] over 1 year ago
Labels: dependencies

#58 - build(deps): bump serde from 1.0.168 to 1.0.171

Pull Request - State: closed - Opened by dependabot[bot] over 1 year ago
Labels: dependencies

#57 - build(deps): bump clap from 4.3.11 to 4.3.12

Pull Request - State: closed - Opened by dependabot[bot] over 1 year ago
Labels: dependencies

#56 - test: add s3 integration

Pull Request - State: closed - Opened by tshauck over 1 year ago

#55 - docs: improve docs and Cargo.toml

Pull Request - State: closed - Opened by tshauck over 1 year ago

#54 - feat: cleanup schema

Pull Request - State: closed - Opened by tshauck over 1 year ago

#53 - feat: add error handling

Pull Request - State: closed - Opened by tshauck over 1 year ago

#52 - build: update deps from building on windows

Pull Request - State: closed - Opened by tshauck over 1 year ago

#51 - fix: fix AWS_PROFILE

Pull Request - State: closed - Opened by tshauck over 1 year ago

#50 - feat: working fcs datasource

Pull Request - State: closed - Opened by tshauck over 1 year ago

#49 - test: add r smoke test

Pull Request - State: closed - Opened by tshauck over 1 year ago

#48 - build(deps): bump serde from 1.0.167 to 1.0.168

Pull Request - State: closed - Opened by dependabot[bot] over 1 year ago
Labels: dependencies

#47 - feat: add fcs reader

Pull Request - State: closed - Opened by tshauck over 1 year ago

#46 - build(deps): bump serde from 1.0.166 to 1.0.167

Pull Request - State: closed - Opened by dependabot[bot] over 1 year ago
Labels: dependencies

#45 - build(deps): bump noodles from 0.40.0 to 0.44.0

Pull Request - State: closed - Opened by dependabot[bot] over 1 year ago
Labels: dependencies

#44 - feat: add aws default chain

Pull Request - State: closed - Opened by tshauck over 1 year ago

#43 - build: isolate r package deps

Pull Request - State: closed - Opened by tshauck over 1 year ago

#42 - feat: updating versions

Pull Request - State: closed - Opened by tshauck over 1 year ago

#41 - build: start on R release

Pull Request - State: closed - Opened by tshauck over 1 year ago

#40 - Refactor r action

Pull Request - State: closed - Opened by tshauck over 1 year ago

#39 - fix: fix null, add benchs

Pull Request - State: closed - Opened by tshauck over 1 year ago

#38 - build(deps): bump async-trait from 0.1.69 to 0.1.70

Pull Request - State: closed - Opened by dependabot[bot] over 1 year ago
Labels: dependencies

#37 - build(deps): bump serde from 1.0.165 to 1.0.166

Pull Request - State: closed - Opened by dependabot[bot] over 1 year ago
Labels: dependencies

#36 - build: ic for r build

Pull Request - State: closed - Opened by tshauck over 1 year ago

#35 - build(deps): bump clap from 4.3.3 to 4.3.10

Pull Request - State: closed - Opened by dependabot[bot] over 1 year ago
Labels: dependencies

#34 - build(deps): bump tokio from 1.28.2 to 1.29.1

Pull Request - State: closed - Opened by dependabot[bot] over 1 year ago
Labels: dependencies

#33 - build(deps): bump object_store from 0.5.6 to 0.6.1

Pull Request - State: closed - Opened by dependabot[bot] over 1 year ago - 1 comment
Labels: dependencies

#32 - build(deps): bump noodles from 0.40.0 to 0.43.0

Pull Request - State: closed - Opened by dependabot[bot] over 1 year ago - 1 comment
Labels: dependencies

#31 - build(deps): bump quick-xml from 0.28.2 to 0.29.0

Pull Request - State: closed - Opened by dependabot[bot] over 1 year ago
Labels: dependencies

#30 - fix: fix bug when no precursors

Pull Request - State: closed - Opened by tshauck over 1 year ago

#29 - test: add R tests

Pull Request - State: closed - Opened by tshauck over 1 year ago

#28 - feat: refactor r functions

Pull Request - State: closed - Opened by tshauck over 1 year ago

#27 - feat: filling out r funcs

Pull Request - State: closed - Opened by tshauck over 1 year ago

#26 - feat: add spectra cv params

Pull Request - State: closed - Opened by tshauck over 1 year ago

#25 - feat: ic for R lib

Pull Request - State: closed - Opened by tshauck over 1 year ago

#24 - feat: add precusor/isolation window

Pull Request - State: closed - Opened by tshauck over 1 year ago

#23 - fix: add missing gtf to sources list

Pull Request - State: closed - Opened by tshauck over 1 year ago

#22 - feat: adding arrays to mzml

Pull Request - State: closed - Opened by tshauck over 1 year ago