Ecosyste.ms: Issues
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GitHub / wheretrue/exon issues and pull requests
#552 - build(deps): bump quick-xml from 0.31.0 to 0.33.0
Pull Request -
State: closed - Opened by dependabot[bot] 5 months ago
- 1 comment
Labels: dependencies
#551 - build(deps): bump sqllogictest from 0.20.5 to 0.20.6
Pull Request -
State: closed - Opened by dependabot[bot] 5 months ago
Labels: dependencies
#551 - build(deps): bump sqllogictest from 0.20.5 to 0.20.6
Pull Request -
State: closed - Opened by dependabot[bot] 5 months ago
Labels: dependencies
#550 - build(deps): bump lazy_static from 1.4.0 to 1.5.0
Pull Request -
State: closed - Opened by dependabot[bot] 5 months ago
Labels: dependencies
#550 - build(deps): bump lazy_static from 1.4.0 to 1.5.0
Pull Request -
State: closed - Opened by dependabot[bot] 5 months ago
Labels: dependencies
#549 - Support BigBED file
Issue -
State: open - Opened by tshauck 5 months ago
Labels: enhancement
#549 - Support BigBED file
Issue -
State: open - Opened by tshauck 5 months ago
Labels: enhancement
#548 - Support SDF File
Issue -
State: open - Opened by tshauck 5 months ago
Labels: enhancement
#548 - Support SDF File
Issue -
State: open - Opened by tshauck 5 months ago
Labels: enhancement
#547 - feat: make hmm dom tab extension settable
Pull Request -
State: closed - Opened by tshauck 5 months ago
#547 - feat: make hmm dom tab extension settable
Pull Request -
State: closed - Opened by tshauck 5 months ago
#546 - build(deps): bump aws-config from 1.5.2 to 1.5.3
Pull Request -
State: closed - Opened by dependabot[bot] 5 months ago
Labels: dependencies
#546 - build(deps): bump aws-config from 1.5.2 to 1.5.3
Pull Request -
State: closed - Opened by dependabot[bot] 5 months ago
Labels: dependencies
#545 - build(deps): bump sqllogictest from 0.20.4 to 0.20.5
Pull Request -
State: closed - Opened by dependabot[bot] 5 months ago
Labels: dependencies
#545 - build(deps): bump sqllogictest from 0.20.4 to 0.20.5
Pull Request -
State: closed - Opened by dependabot[bot] 5 months ago
Labels: dependencies
#544 - refactor: fasta options refactor
Pull Request -
State: closed - Opened by tshauck 5 months ago
#544 - refactor: fasta options refactor
Pull Request -
State: closed - Opened by tshauck 5 months ago
#543 - build(deps): bump lightmotif-io from 0.7.2 to 0.7.3
Pull Request -
State: closed - Opened by dependabot[bot] 5 months ago
Labels: dependencies
#543 - build(deps): bump lightmotif-io from 0.7.2 to 0.7.3
Pull Request -
State: closed - Opened by dependabot[bot] 5 months ago
Labels: dependencies
#542 - build(deps): bump url from 2.5.1 to 2.5.2
Pull Request -
State: closed - Opened by dependabot[bot] 5 months ago
Labels: dependencies
#541 - build(deps): bump aws-config from 1.5.1 to 1.5.2
Pull Request -
State: closed - Opened by dependabot[bot] 5 months ago
Labels: dependencies
#541 - build(deps): bump aws-config from 1.5.1 to 1.5.2
Pull Request -
State: closed - Opened by dependabot[bot] 5 months ago
Labels: dependencies
#540 - build(deps): bump lightmotif from 0.7.2 to 0.7.3
Pull Request -
State: closed - Opened by dependabot[bot] 5 months ago
Labels: dependencies
#539 - feat: support bed files with commented lines
Pull Request -
State: closed - Opened by ghuls 5 months ago
- 3 comments
#538 - build: update noodles
Pull Request -
State: closed - Opened by tshauck 5 months ago
#537 - Update Noodles and Add Test for Long Name
Issue -
State: closed - Opened by tshauck 5 months ago
#536 - build(deps): bump lightmotif-io from 0.6.0 to 0.7.2
Pull Request -
State: closed - Opened by dependabot[bot] 5 months ago
Labels: dependencies
#536 - build(deps): bump lightmotif-io from 0.6.0 to 0.7.2
Pull Request -
State: closed - Opened by dependabot[bot] 5 months ago
Labels: dependencies
#536 - build(deps): bump lightmotif-io from 0.6.0 to 0.7.2
Pull Request -
State: closed - Opened by dependabot[bot] 5 months ago
Labels: dependencies
#535 - build(deps): bump lightmotif from 0.6.0 to 0.7.2
Pull Request -
State: open - Opened by dependabot[bot] 5 months ago
Labels: dependencies
#535 - build(deps): bump lightmotif from 0.6.0 to 0.7.2
Pull Request -
State: closed - Opened by dependabot[bot] 5 months ago
Labels: dependencies
#534 - Refactor table options to use ConfigExtensions
Issue -
State: open - Opened by tshauck 5 months ago
Labels: enhancement
#534 - Refactor table options to use ConfigExtensions
Issue -
State: open - Opened by tshauck 5 months ago
#534 - Refactor table options to use ConfigExtensions
Issue -
State: open - Opened by tshauck 5 months ago
#533 - feat: support number of fields in bed files
Pull Request -
State: closed - Opened by tshauck 5 months ago
#533 - feat: support number of fields in bed files
Pull Request -
State: closed - Opened by tshauck 5 months ago
#532 - build(deps): bump url from 2.5.0 to 2.5.1
Pull Request -
State: closed - Opened by dependabot[bot] 5 months ago
Labels: dependencies
#532 - build(deps): bump url from 2.5.0 to 2.5.1
Pull Request -
State: closed - Opened by dependabot[bot] 5 months ago
Labels: dependencies
#531 - build(deps): bump datafusion-cli from 38.0.0 to 39.0.0
Pull Request -
State: closed - Opened by dependabot[bot] 5 months ago
- 1 comment
Labels: dependencies
#530 - build(deps): bump quick-xml from 0.31.0 to 0.32.0
Pull Request -
State: closed - Opened by dependabot[bot] 5 months ago
- 1 comment
Labels: dependencies
#530 - build(deps): bump quick-xml from 0.31.0 to 0.32.0
Pull Request -
State: open - Opened by dependabot[bot] 5 months ago
Labels: dependencies
#529 - build(deps): bump clap from 4.5.4 to 4.5.7
Pull Request -
State: closed - Opened by dependabot[bot] 5 months ago
Labels: dependencies
#528 - build: update datafusion
Pull Request -
State: closed - Opened by tshauck 5 months ago
#527 - build(deps): bump regex from 1.10.4 to 1.10.5
Pull Request -
State: closed - Opened by dependabot[bot] 5 months ago
Labels: dependencies
#527 - build(deps): bump regex from 1.10.4 to 1.10.5
Pull Request -
State: closed - Opened by dependabot[bot] 5 months ago
Labels: dependencies
#526 - build(deps): bump clap from 4.5.4 to 4.5.6
Pull Request -
State: closed - Opened by dependabot[bot] 5 months ago
- 1 comment
Labels: dependencies
#526 - build(deps): bump clap from 4.5.4 to 4.5.6
Pull Request -
State: closed - Opened by dependabot[bot] 5 months ago
- 1 comment
Labels: dependencies
#525 - build(deps): bump sqllogictest from 0.20.2 to 0.20.4
Pull Request -
State: closed - Opened by dependabot[bot] 5 months ago
Labels: dependencies
#525 - build(deps): bump sqllogictest from 0.20.2 to 0.20.4
Pull Request -
State: closed - Opened by dependabot[bot] 5 months ago
Labels: dependencies
#524 - build(deps): bump aws-config from 1.5.0 to 1.5.1
Pull Request -
State: closed - Opened by dependabot[bot] 5 months ago
Labels: dependencies
#524 - build(deps): bump aws-config from 1.5.0 to 1.5.1
Pull Request -
State: closed - Opened by dependabot[bot] 5 months ago
Labels: dependencies
#523 - build(deps): bump tokio from 1.37.0 to 1.38.0
Pull Request -
State: closed - Opened by dependabot[bot] 6 months ago
Labels: dependencies
#522 - fix: support relative paths
Pull Request -
State: closed - Opened by tshauck 6 months ago
#521 - Exon Context No Longer Available in CLI
Issue -
State: closed - Opened by tshauck 6 months ago
#520 - refactor: improve FASTA batch serialization add FASTQ
Pull Request -
State: closed - Opened by tshauck 6 months ago
#519 - feat: support gzip writer
Pull Request -
State: closed - Opened by tshauck 6 months ago
#519 - feat: support gzip writer
Pull Request -
State: closed - Opened by tshauck 6 months ago
#518 - build: update exon version in R
Pull Request -
State: closed - Opened by tshauck 6 months ago
#518 - build: update exon version in R
Pull Request -
State: closed - Opened by tshauck 6 months ago
#517 - fix: sync -> sink
Pull Request -
State: closed - Opened by tshauck 6 months ago
#516 - Copy To FASTA Should Support compression
Issue -
State: closed - Opened by tshauck 6 months ago
- 1 comment
#515 - build(deps): bump serde from 1.0.202 to 1.0.203
Pull Request -
State: closed - Opened by dependabot[bot] 6 months ago
Labels: dependencies
#514 - feat: copy to FASTA file
Pull Request -
State: closed - Opened by tshauck 6 months ago
#513 - refactor: one hot to int encode
Pull Request -
State: closed - Opened by tshauck 6 months ago
#512 - feat: pass through encoding option to create table
Pull Request -
State: closed - Opened by tshauck 6 months ago
#511 - feat: add integer dna and protein encoding
Pull Request -
State: closed - Opened by tshauck 6 months ago
#510 - build(deps): bump aws-config from 1.4.0 to 1.5.0
Pull Request -
State: closed - Opened by dependabot[bot] 6 months ago
Labels: dependencies
#509 - build(deps): bump noodles-gff from 0.32.0 to 0.33.0
Pull Request -
State: closed - Opened by dependabot[bot] 6 months ago
- 1 comment
Labels: dependencies
#508 - build(deps): bump bigtools from 0.4.2 to 0.4.3
Pull Request -
State: closed - Opened by dependabot[bot] 6 months ago
Labels: dependencies
#508 - build(deps): bump bigtools from 0.4.2 to 0.4.3
Pull Request -
State: open - Opened by dependabot[bot] 6 months ago
Labels: dependencies
#507 - build: update itertools
Pull Request -
State: closed - Opened by tshauck 6 months ago
#506 - build(deps): bump itertools from 0.12.1 to 0.13.0
Pull Request -
State: closed - Opened by dependabot[bot] 6 months ago
- 1 comment
Labels: dependencies
#505 - feat: add lazy gff support
Pull Request -
State: closed - Opened by tshauck 6 months ago
#504 - build(deps): bump serde from 1.0.201 to 1.0.202
Pull Request -
State: closed - Opened by dependabot[bot] 6 months ago
Labels: dependencies
#503 - build: update to df 38
Pull Request -
State: closed - Opened by tshauck 6 months ago
#502 - build(deps): bump datafusion-cli from 37.0.0 to 38.0.0
Pull Request -
State: closed - Opened by dependabot[bot] 6 months ago
- 1 comment
Labels: dependencies
#501 - build(deps): bump aws-config from 1.3.0 to 1.4.0
Pull Request -
State: closed - Opened by dependabot[bot] 6 months ago
Labels: dependencies
#501 - build(deps): bump aws-config from 1.3.0 to 1.4.0
Pull Request -
State: closed - Opened by dependabot[bot] 6 months ago
Labels: dependencies
#500 - build(deps): bump serde from 1.0.200 to 1.0.201
Pull Request -
State: closed - Opened by dependabot[bot] 6 months ago
Labels: dependencies
#499 - build(deps): bump tokio-util from 0.7.10 to 0.7.11
Pull Request -
State: closed - Opened by dependabot[bot] 6 months ago
Labels: dependencies
#499 - build(deps): bump tokio-util from 0.7.10 to 0.7.11
Pull Request -
State: closed - Opened by dependabot[bot] 6 months ago
Labels: dependencies
#498 - feat(R): expose `to_record_batch_reader`
Pull Request -
State: closed - Opened by tshauck 7 months ago
#498 - feat(R): expose `to_record_batch_reader`
Pull Request -
State: closed - Opened by tshauck 7 months ago
#497 - Expose `RecordBatchStreamReader` via R API
Issue -
State: closed - Opened by tshauck 7 months ago
- 3 comments
#497 - Expose `RecordBatchStreamReader` via R API
Issue -
State: closed - Opened by tshauck 7 months ago
- 3 comments
#496 - feat: add dead code
Pull Request -
State: closed - Opened by tshauck 7 months ago
#495 - build(deps): bump serde from 1.0.199 to 1.0.200
Pull Request -
State: closed - Opened by dependabot[bot] 7 months ago
Labels: dependencies
#495 - build(deps): bump serde from 1.0.199 to 1.0.200
Pull Request -
State: closed - Opened by dependabot[bot] 7 months ago
Labels: dependencies
#494 - build(deps): bump aws-config from 1.2.1 to 1.3.0
Pull Request -
State: closed - Opened by dependabot[bot] 7 months ago
Labels: dependencies
#494 - build(deps): bump aws-config from 1.2.1 to 1.3.0
Pull Request -
State: closed - Opened by dependabot[bot] 7 months ago
Labels: dependencies
#493 - fastest way to subset bam/sam by tags
Issue -
State: closed - Opened by Ed2uiz 7 months ago
- 5 comments
#492 - build(deps): bump base64 from 0.22.0 to 0.22.1
Pull Request -
State: closed - Opened by dependabot[bot] 7 months ago
Labels: dependencies
#491 - build(deps): bump flate2 from 1.0.29 to 1.0.30
Pull Request -
State: closed - Opened by dependabot[bot] 7 months ago
Labels: dependencies
#491 - build(deps): bump flate2 from 1.0.29 to 1.0.30
Pull Request -
State: closed - Opened by dependabot[bot] 7 months ago
Labels: dependencies
#491 - build(deps): bump flate2 from 1.0.29 to 1.0.30
Pull Request -
State: closed - Opened by dependabot[bot] 7 months ago
Labels: dependencies
#491 - build(deps): bump flate2 from 1.0.29 to 1.0.30
Pull Request -
State: closed - Opened by dependabot[bot] 7 months ago
Labels: dependencies
#491 - build(deps): bump flate2 from 1.0.29 to 1.0.30
Pull Request -
State: closed - Opened by dependabot[bot] 7 months ago
Labels: dependencies
#490 - build(deps): bump serde from 1.0.198 to 1.0.199
Pull Request -
State: closed - Opened by dependabot[bot] 7 months ago
Labels: dependencies
#490 - build(deps): bump serde from 1.0.198 to 1.0.199
Pull Request -
State: closed - Opened by dependabot[bot] 7 months ago
Labels: dependencies
#490 - build(deps): bump serde from 1.0.198 to 1.0.199
Pull Request -
State: closed - Opened by dependabot[bot] 7 months ago
Labels: dependencies