Ecosyste.ms: Issues

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GitHub / wheretrue/exon issues and pull requests

#637 - build(deps): bump clap from 4.5.16 to 4.5.21

Pull Request - State: open - Opened by dependabot[bot] 2 days ago
Labels: dependencies

#636 - build(deps): bump serde from 1.0.209 to 1.0.215

Pull Request - State: open - Opened by dependabot[bot] 4 days ago
Labels: dependencies

#635 - build(deps): bump serde from 1.0.209 to 1.0.214

Pull Request - State: closed - Opened by dependabot[bot] 18 days ago - 1 comment
Labels: dependencies

#634 - build(deps): bump serde from 1.0.209 to 1.0.213

Pull Request - State: closed - Opened by dependabot[bot] 24 days ago - 1 comment
Labels: dependencies

#633 - build(deps): bump serde from 1.0.209 to 1.0.211

Pull Request - State: closed - Opened by dependabot[bot] 25 days ago - 1 comment
Labels: dependencies

#632 - build(deps): bump clap from 4.5.16 to 4.5.20

Pull Request - State: closed - Opened by dependabot[bot] about 1 month ago - 1 comment
Labels: dependencies

#631 - build(deps): bump clap from 4.5.16 to 4.5.19

Pull Request - State: closed - Opened by dependabot[bot] about 2 months ago - 1 comment
Labels: dependencies

#630 - build(deps): bump clap from 4.5.16 to 4.5.18

Pull Request - State: closed - Opened by dependabot[bot] about 2 months ago - 1 comment
Labels: dependencies

#629 - build(deps): bump aws-config from 1.5.5 to 1.5.6

Pull Request - State: open - Opened by dependabot[bot] 2 months ago
Labels: dependencies

#628 - build(deps): bump sqllogictest from 0.21.0 to 0.22.0

Pull Request - State: open - Opened by dependabot[bot] 2 months ago
Labels: dependencies

#627 - build(deps): bump serde from 1.0.209 to 1.0.210

Pull Request - State: closed - Opened by dependabot[bot] 2 months ago - 1 comment
Labels: dependencies

#626 - bump: bump versions

Pull Request - State: open - Opened by tshauck 2 months ago

#625 - build(deps): bump clap from 4.5.16 to 4.5.17

Pull Request - State: closed - Opened by dependabot[bot] 2 months ago - 1 comment
Labels: dependencies

#624 - build(deps): bump tokio-util from 0.7.11 to 0.7.12

Pull Request - State: open - Opened by dependabot[bot] 2 months ago
Labels: dependencies

#623 - fix: include `read_deltalake` feature

Pull Request - State: closed - Opened by tshauck 2 months ago

#622 - fix: remove lightmotif

Pull Request - State: closed - Opened by tshauck 2 months ago

#621 - feat: support delta tables

Pull Request - State: closed - Opened by tshauck 2 months ago

#620 - build(deps): bump lightmotif-io from 0.8.0 to 0.9.1

Pull Request - State: closed - Opened by dependabot[bot] 2 months ago
Labels: dependencies

#619 - build(deps): bump lightmotif from 0.8.0 to 0.9.1

Pull Request - State: closed - Opened by dependabot[bot] 2 months ago
Labels: dependencies

#618 - build(deps): bump async-trait from 0.1.81 to 0.1.82

Pull Request - State: closed - Opened by dependabot[bot] 3 months ago
Labels: dependencies

#617 - build(deps): bump tokio from 1.39.3 to 1.40.0

Pull Request - State: closed - Opened by dependabot[bot] 3 months ago
Labels: dependencies

#616 - build(deps): bump aws-credential-types from 1.2.0 to 1.2.1

Pull Request - State: closed - Opened by dependabot[bot] 3 months ago
Labels: dependencies

#615 - fix: better error message for bam reader

Pull Request - State: closed - Opened by tshauck 3 months ago

#614 - fix: fix a few bugs

Pull Request - State: closed - Opened by tshauck 3 months ago

#613 - build(deps): bump flate2 from 1.0.32 to 1.0.33

Pull Request - State: closed - Opened by dependabot[bot] 3 months ago
Labels: dependencies

#612 - build(deps): bump serde from 1.0.208 to 1.0.209

Pull Request - State: closed - Opened by dependabot[bot] 3 months ago
Labels: dependencies

#611 - build(deps): bump flate2 from 1.0.31 to 1.0.32

Pull Request - State: closed - Opened by dependabot[bot] 3 months ago
Labels: dependencies

#610 - build(deps): bump tokio from 1.39.2 to 1.39.3

Pull Request - State: closed - Opened by dependabot[bot] 3 months ago
Labels: dependencies

#609 - build: update to df 41

Pull Request - State: closed - Opened by tshauck 3 months ago

#608 - build(deps): bump serde from 1.0.207 to 1.0.208

Pull Request - State: closed - Opened by dependabot[bot] 3 months ago
Labels: dependencies

#607 - build(deps): bump clap from 4.5.15 to 4.5.16

Pull Request - State: closed - Opened by dependabot[bot] 3 months ago
Labels: dependencies

#606 - build(deps): bump bigtools from 0.5.1 to 0.5.2

Pull Request - State: closed - Opened by dependabot[bot] 3 months ago
Labels: dependencies

#605 - build(deps): bump serde from 1.0.205 to 1.0.207

Pull Request - State: closed - Opened by dependabot[bot] 3 months ago
Labels: dependencies

#604 - build(deps): bump datafusion-cli from 40.0.0 to 41.0.0

Pull Request - State: closed - Opened by dependabot[bot] 3 months ago - 1 comment
Labels: dependencies

#603 - build(deps): bump clap from 4.5.13 to 4.5.15

Pull Request - State: closed - Opened by dependabot[bot] 3 months ago
Labels: dependencies

#602 - build(deps): bump aws-config from 1.5.4 to 1.5.5

Pull Request - State: closed - Opened by dependabot[bot] 3 months ago
Labels: dependencies

#601 - build(deps): bump serde from 1.0.205 to 1.0.206

Pull Request - State: closed - Opened by dependabot[bot] 3 months ago - 1 comment
Labels: dependencies

#600 - build(deps): bump clap from 4.5.13 to 4.5.14

Pull Request - State: closed - Opened by dependabot[bot] 3 months ago - 1 comment
Labels: dependencies

#599 - build(deps): bump serde from 1.0.204 to 1.0.205

Pull Request - State: closed - Opened by dependabot[bot] 3 months ago
Labels: dependencies

#598 - bench: sdf reading bench

Pull Request - State: closed - Opened by tshauck 3 months ago

#597 - bench: update benchmarks

Pull Request - State: closed - Opened by tshauck 3 months ago

#596 - feat: update noodles

Pull Request - State: closed - Opened by tshauck 3 months ago

#595 - build(deps): bump flate2 from 1.0.30 to 1.0.31

Pull Request - State: closed - Opened by dependabot[bot] 3 months ago
Labels: dependencies

#594 - build(deps): bump regex from 1.10.5 to 1.10.6

Pull Request - State: closed - Opened by dependabot[bot] 3 months ago
Labels: dependencies

#593 - build(deps): bump bytes from 1.7.0 to 1.7.1

Pull Request - State: closed - Opened by dependabot[bot] 4 months ago
Labels: dependencies

#592 - build(deps): bump clap from 4.5.11 to 4.5.13

Pull Request - State: closed - Opened by dependabot[bot] 4 months ago
Labels: dependencies

#591 - fix: set mzml compression

Pull Request - State: closed - Opened by tshauck 4 months ago

#590 - build(deps): bump bytes from 1.6.1 to 1.7.0

Pull Request - State: closed - Opened by dependabot[bot] 4 months ago
Labels: dependencies

#589 - build(deps): bump bigtools from 0.5.0 to 0.5.1

Pull Request - State: closed - Opened by dependabot[bot] 4 months ago
Labels: dependencies

#588 - build(deps): bump tokio from 1.39.1 to 1.39.2

Pull Request - State: closed - Opened by dependabot[bot] 4 months ago
Labels: dependencies

#587 - build(deps): bump arrow from 52.1.0 to 52.2.0

Pull Request - State: closed - Opened by dependabot[bot] 4 months ago
Labels: dependencies

#586 - feat: use cli context

Pull Request - State: closed - Opened by tshauck 4 months ago

#585 - build(deps): bump clap from 4.5.10 to 4.5.11

Pull Request - State: closed - Opened by dependabot[bot] 4 months ago
Labels: dependencies

#584 - feat: use projection in fastq reads

Pull Request - State: closed - Opened by tshauck 4 months ago

#583 - build(deps): bump clap from 4.5.9 to 4.5.10

Pull Request - State: closed - Opened by dependabot[bot] 4 months ago
Labels: dependencies

#582 - build(deps): bump tokio from 1.38.1 to 1.39.1

Pull Request - State: closed - Opened by dependabot[bot] 4 months ago
Labels: dependencies

#581 - build(deps): bump quick-xml from 0.36.0 to 0.36.1

Pull Request - State: closed - Opened by dependabot[bot] 4 months ago
Labels: dependencies

#580 - build(deps): bump object_store from 0.10.1 to 0.10.2

Pull Request - State: closed - Opened by dependabot[bot] 4 months ago
Labels: dependencies

#579 - build: update exon in r

Pull Request - State: closed - Opened by tshauck 4 months ago

#578 - build: check for cheap clones

Pull Request - State: closed - Opened by tshauck 4 months ago

#577 - build(deps): bump tokio from 1.38.0 to 1.38.1

Pull Request - State: closed - Opened by dependabot[bot] 4 months ago
Labels: dependencies

#576 - feat: add read_sdf api

Pull Request - State: closed - Opened by tshauck 4 months ago

#575 - feat: update to df 40

Pull Request - State: closed - Opened by tshauck 4 months ago

#575 - feat: update to df 40

Pull Request - State: closed - Opened by tshauck 4 months ago

#574 - build(deps): bump datafusion-cli from 39.0.0 to 40.0.0

Pull Request - State: closed - Opened by dependabot[bot] 4 months ago - 1 comment
Labels: dependencies

#574 - build(deps): bump datafusion-cli from 39.0.0 to 40.0.0

Pull Request - State: closed - Opened by dependabot[bot] 4 months ago - 1 comment
Labels: dependencies

#573 - build(deps): bump bytes from 1.6.0 to 1.6.1

Pull Request - State: closed - Opened by dependabot[bot] 4 months ago
Labels: dependencies

#572 - feat: support async sdf files

Pull Request - State: closed - Opened by tshauck 4 months ago

#571 - build(deps): bump async-trait from 0.1.80 to 0.1.81

Pull Request - State: closed - Opened by dependabot[bot] 4 months ago
Labels: dependencies

#570 - build(deps): bump clap from 4.5.7 to 4.5.9

Pull Request - State: closed - Opened by dependabot[bot] 4 months ago
Labels: dependencies

#569 - feat: update bigwig

Pull Request - State: closed - Opened by tshauck 4 months ago

#569 - feat: update bigwig

Pull Request - State: closed - Opened by tshauck 4 months ago

#569 - feat: update bigwig

Pull Request - State: closed - Opened by tshauck 4 months ago

#568 - build(deps): bump quick-xml from 0.31.0 to 0.36.0

Pull Request - State: closed - Opened by dependabot[bot] 4 months ago
Labels: dependencies

#567 - feat: start adding sdf

Pull Request - State: closed - Opened by tshauck 4 months ago

#567 - feat: start adding sdf

Pull Request - State: closed - Opened by tshauck 4 months ago

#567 - feat: start adding sdf

Pull Request - State: closed - Opened by tshauck 4 months ago

#567 - feat: start adding sdf

Pull Request - State: closed - Opened by tshauck 4 months ago

#566 - build(deps): bump serde from 1.0.203 to 1.0.204

Pull Request - State: closed - Opened by dependabot[bot] 4 months ago
Labels: dependencies

#566 - build(deps): bump serde from 1.0.203 to 1.0.204

Pull Request - State: closed - Opened by dependabot[bot] 4 months ago
Labels: dependencies

#566 - build(deps): bump serde from 1.0.203 to 1.0.204

Pull Request - State: closed - Opened by dependabot[bot] 4 months ago
Labels: dependencies

#566 - build(deps): bump serde from 1.0.203 to 1.0.204

Pull Request - State: closed - Opened by dependabot[bot] 4 months ago
Labels: dependencies

#565 - build(deps): bump aws-config from 1.5.3 to 1.5.4

Pull Request - State: closed - Opened by dependabot[bot] 4 months ago
Labels: dependencies

#565 - build(deps): bump aws-config from 1.5.3 to 1.5.4

Pull Request - State: closed - Opened by dependabot[bot] 4 months ago
Labels: dependencies

#565 - build(deps): bump aws-config from 1.5.3 to 1.5.4

Pull Request - State: closed - Opened by dependabot[bot] 4 months ago
Labels: dependencies

#564 - build(deps): bump arrow from 52.0.0 to 52.1.0

Pull Request - State: closed - Opened by dependabot[bot] 4 months ago
Labels: dependencies

#564 - build(deps): bump arrow from 52.0.0 to 52.1.0

Pull Request - State: closed - Opened by dependabot[bot] 4 months ago
Labels: dependencies

#564 - build(deps): bump arrow from 52.0.0 to 52.1.0

Pull Request - State: closed - Opened by dependabot[bot] 4 months ago
Labels: dependencies

#563 - build(deps): bump bigtools from 0.4.3 to 0.5.0

Pull Request - State: closed - Opened by dependabot[bot] 4 months ago - 1 comment
Labels: dependencies

#563 - build(deps): bump bigtools from 0.4.3 to 0.5.0

Pull Request - State: closed - Opened by dependabot[bot] 4 months ago - 1 comment
Labels: dependencies

#562 - feat(sdf): array and batch reader

Pull Request - State: closed - Opened by tshauck 5 months ago

#561 - build(deps): bump sqllogictest from 0.20.6 to 0.21.0

Pull Request - State: closed - Opened by dependabot[bot] 5 months ago
Labels: dependencies

#560 - build(deps): bump lightmotif-io from 0.7.3 to 0.8.0

Pull Request - State: closed - Opened by dependabot[bot] 5 months ago
Labels: dependencies

#559 - build(deps): bump lightmotif from 0.7.3 to 0.8.0

Pull Request - State: closed - Opened by dependabot[bot] 5 months ago
Labels: dependencies

#558 - build(deps): bump quick-xml from 0.31.0 to 0.35.0

Pull Request - State: closed - Opened by dependabot[bot] 5 months ago - 1 comment
Labels: dependencies

#557 - build(deps): bump clap from 4.5.7 to 4.5.8

Pull Request - State: closed - Opened by dependabot[bot] 5 months ago
Labels: dependencies

#556 - feat: add sd reader

Pull Request - State: closed - Opened by tshauck 5 months ago

#555 - feat: include data in sd file parsing

Pull Request - State: closed - Opened by tshauck 5 months ago

#554 - build(deps): bump quick-xml from 0.31.0 to 0.34.0

Pull Request - State: closed - Opened by dependabot[bot] 5 months ago - 1 comment
Labels: dependencies

#553 - feat: molfile record parser

Pull Request - State: closed - Opened by tshauck 5 months ago