Ecosyste.ms: Issues

An open API service for providing issue and pull request metadata for open source projects.

GitHub / westpa/westpa issues and pull requests

#460 - RNG Modernization

Pull Request - State: open - Opened by jeremyleung521 12 days ago - 1 comment
Labels: enhancement

#459 - GH Branches Automated Mirroring

Pull Request - State: closed - Opened by jeremyleung521 16 days ago - 1 comment
Labels: CI maintenance

#458 - Update AUTHORS

Pull Request - State: closed - Opened by jeremyleung521 18 days ago - 1 comment
Labels: enhancement

#457 - Fix w_init when using hdf5 framework with processes work manager

Pull Request - State: closed - Opened by jeremyleung521 18 days ago - 2 comments
Labels: bug

#455 - Bump pypa/cibuildwheel from 2.21.2 to 2.21.3

Pull Request - State: closed - Opened by dependabot[bot] 23 days ago
Labels: dependencies

#454 - RTD Fix

Pull Request - State: closed - Opened by jeremyleung521 24 days ago - 1 comment
Labels: CI maintenance

#453 - make sure output_map is correct for RecursiveBinMapper

Pull Request - State: open - Opened by jeremyleung521 24 days ago - 1 comment
Labels: bug

#452 - Allow WESS and WEED to detect when a simulation has been truncated

Pull Request - State: closed - Opened by gma57 about 1 month ago - 1 comment
Labels: enhancement

#451 - TRACKING: Python 3.13 Support

Issue - State: open - Opened by jeremyleung521 about 1 month ago
Labels: enhancement, dependencies

#450 - Enable testing for Python 3.13

Pull Request - State: open - Opened by jeremyleung521 about 1 month ago
Labels: enhancement, dependencies

#449 - Dropping Python 3.8 Testing

Pull Request - State: closed - Opened by jeremyleung521 about 1 month ago - 1 comment
Labels: dependencies, CI maintenance

#448 - [pre-commit.ci] pre-commit autoupdate

Pull Request - State: closed - Opened by pre-commit-ci[bot] about 2 months ago - 1 comment

#447 - Bump pypa/cibuildwheel from 2.20.0 to 2.21.1

Pull Request - State: closed - Opened by dependabot[bot] about 2 months ago
Labels: dependencies

#446 - Allow reruns on fluxanl test

Pull Request - State: closed - Opened by jeremyleung521 2 months ago - 1 comment
Labels: CI maintenance

#445 - Clean up new MAB tests

Pull Request - State: closed - Opened by jeremyleung521 2 months ago - 1 comment
Labels: CI maintenance

#444 - Drop mambaforge from CI

Pull Request - State: closed - Opened by jeremyleung521 2 months ago - 1 comment
Labels: CI maintenance

#443 - remove w_fluxanl deprecation warning

Pull Request - State: closed - Opened by jeremyleung521 3 months ago - 1 comment
Labels: Error Messages Improvement

#442 - Numpy2 support

Pull Request - State: open - Opened by jeremyleung521 3 months ago
Labels: dependencies

#441 - Bump pypa/cibuildwheel from 2.19.2 to 2.20.0

Pull Request - State: closed - Opened by dependabot[bot] 3 months ago
Labels: dependencies

#440 - Voronoi Binning Improvement

Pull Request - State: open - Opened by jeremyleung521 3 months ago - 1 comment
Labels: enhancement

#439 - [pre-commit.ci] pre-commit autoupdate

Pull Request - State: closed - Opened by pre-commit-ci[bot] 3 months ago - 1 comment
Labels: dependencies, CI maintenance

#438 - [pre-commit.ci] pre-commit autoupdate

Pull Request - State: closed - Opened by pre-commit-ci[bot] 4 months ago - 1 comment
Labels: dependencies, CI maintenance

#437 - Bump pypa/cibuildwheel from 2.19.1 to 2.19.2

Pull Request - State: closed - Opened by dependabot[bot] 4 months ago
Labels: dependencies

#436 - Fixing the MAB skip function in 2+ dimensions.

Pull Request - State: closed - Opened by HScheiber 5 months ago - 4 comments
Labels: bug, enhancement, CI maintenance

#435 - Fix MAB 86 Reporting

Pull Request - State: closed - Opened by jeremyleung521 5 months ago - 1 comment
Labels: bug

#433 - Matplotlib 3.9 compatibility fix

Pull Request - State: closed - Opened by gma57 5 months ago - 1 comment
Labels: bug, dependencies

#432 - RTD pages Update

Pull Request - State: closed - Opened by jeremyleung521 5 months ago - 1 comment
Labels: enhancement

#431 - Bump pypa/cibuildwheel from 2.18.1 to 2.19.1

Pull Request - State: closed - Opened by dependabot[bot] 5 months ago
Labels: dependencies

#430 - Test modernization

Pull Request - State: closed - Opened by jeremyleung521 5 months ago - 1 comment
Labels: enhancement, CI maintenance

#429 - fix case when west/executable/datasets is defined as None

Pull Request - State: closed - Opened by jeremyleung521 5 months ago - 1 comment
Labels: bug

#428 - w_truncate accepts truncate iterations > current_iteration

Pull Request - State: closed - Opened by jeremyleung521 5 months ago - 3 comments
Labels: bug

#427 - [pre-commit.ci] pre-commit autoupdate

Pull Request - State: closed - Opened by pre-commit-ci[bot] 5 months ago - 1 comment

#426 - Bump pypa/cibuildwheel from 2.17.0 to 2.18.1

Pull Request - State: closed - Opened by dependabot[bot] 6 months ago
Labels: dependencies

#425 - build python 3.12 wheels

Pull Request - State: closed - Opened by jeremyleung521 6 months ago - 1 comment
Labels: enhancement, CI maintenance

#424 - remove mdtraj.utils.six dependency in h5io

Pull Request - State: closed - Opened by jeremyleung521 6 months ago
Labels: bug

#423 - Update ODLD Test Bin Definition

Pull Request - State: closed - Opened by jeremyleung521 6 months ago - 1 comment
Labels: CI maintenance

#421 - Small w_states reporting bug

Pull Request - State: closed - Opened by jeremyleung521 6 months ago - 1 comment
Labels: bug

#420 - README update

Pull Request - State: closed - Opened by jeremyleung521 6 months ago - 1 comment

#419 - Allow w_init to save bin_mapper stuff to iteration 1

Pull Request - State: open - Opened by jeremyleung521 6 months ago - 1 comment

#418 - Fix summary tables in westpa.analysis

Pull Request - State: closed - Opened by jeremyleung521 6 months ago - 1 comment
Labels: bug

#416 - Suppress NaturalNameWarning when using HDF5 Framework

Pull Request - State: closed - Opened by jeremyleung521 6 months ago - 1 comment
Labels: enhancement, Error Messages Improvement

#415 - WESTPA 3 Feature: W_Pdist Behavioral Change

Pull Request - State: open - Opened by jeremyleung521 7 months ago - 1 comment
Labels: bug, enhancement, westpa3

#414 - Allow bins to be autodetected with negative max values.

Pull Request - State: closed - Opened by jeremyleung521 7 months ago - 1 comment
Labels: bug

#413 - Verify max_run_wallclock value

Pull Request - State: closed - Opened by jeremyleung521 7 months ago - 1 comment
Labels: bug

#412 - Fix Processes Work Manager Shutdown SegFault

Pull Request - State: closed - Opened by jeremyleung521 7 months ago - 1 comment
Labels: bug

#411 - WESTPA 1.0 Bug Fix: Duplicate Priority/Function Name Callback Crash Fix

Pull Request - State: closed - Opened by jeremyleung521 7 months ago
Labels: bug

#410 - Duplicate Priority/Function Name Callback Crash Fix

Pull Request - State: closed - Opened by jeremyleung521 7 months ago - 1 comment
Labels: bug

#409 - Callback error when different registered callbacks have the same priority and name

Issue - State: closed - Opened by synapticarbors 7 months ago - 2 comments
Labels: bug

#408 - allow users to specify executable config in west.data.datasets

Pull Request - State: closed - Opened by jeremyleung521 7 months ago - 1 comment
Labels: enhancement

#407 - Swapping CI env to install mdtraj with conda

Pull Request - State: closed - Opened by jeremyleung521 7 months ago - 1 comment
Labels: CI maintenance

#406 - [pre-commit.ci] pre-commit autoupdate

Pull Request - State: closed - Opened by pre-commit-ci[bot] 7 months ago - 1 comment

#405 - Add support for testing and wheel-building on macos-arm64 (Apple Silicon)

Pull Request - State: closed - Opened by jeremyleung521 7 months ago - 1 comment
Labels: CI maintenance

#404 - WESTPA3 feature: ibstates auxdata + ability to call "parent" segment with auxdata

Pull Request - State: open - Opened by jeremyleung521 7 months ago - 1 comment
Labels: enhancement, westpa3

#403 - Mab lite with direction 86

Pull Request - State: closed - Opened by darianyang 7 months ago - 1 comment
Labels: enhancement

#402 - force x86-64 macos GitHub Action Runners

Pull Request - State: closed - Opened by jeremyleung521 7 months ago - 1 comment
Labels: CI maintenance

#401 - Debug Mode Fix for w_ipa

Pull Request - State: closed - Opened by jeremyleung521 7 months ago - 1 comment
Labels: bug

#400 - make bin_log user-customizable

Pull Request - State: closed - Opened by jeremyleung521 7 months ago

#399 - West.cfg numpy dtype bug fix

Pull Request - State: closed - Opened by jeremyleung521 7 months ago - 1 comment

#398 - hotfix for propagator

Pull Request - State: closed - Opened by jeremyleung521 7 months ago - 2 comments
Labels: bug

#397 - [pre-commit.ci] pre-commit autoupdate

Pull Request - State: closed - Opened by pre-commit-ci[bot] 7 months ago - 1 comment

#396 - [pre-commit.ci] pre-commit autoupdate

Pull Request - State: closed - Opened by pre-commit-ci[bot] 8 months ago - 1 comment
Labels: CI maintenance

#395 - W_succ ignores -W argument

Pull Request - State: closed - Opened by jeremyleung521 8 months ago - 1 comment
Labels: bug

#394 - Include short description for package on PyPI page

Pull Request - State: closed - Opened by jeremyleung521 8 months ago - 1 comment
Labels: enhancement

#392 - DO NOT MERGE: CI testing

Pull Request - State: closed - Opened by jeremyleung521 8 months ago - 1 comment

#391 - Bump pypa/cibuildwheel from 2.16.5 to 2.17.0

Pull Request - State: closed - Opened by dependabot[bot] 8 months ago - 1 comment
Labels: dependencies

#390 - Improved GitHub Forms (Issues/PRs)

Pull Request - State: closed - Opened by jeremyleung521 8 months ago - 1 comment
Labels: Error Messages Improvement

#389 - specify errors to be HDF5 Framework related

Pull Request - State: closed - Opened by jeremyleung521 8 months ago - 1 comment
Labels: enhancement, Error Messages Improvement, good-first-issue

#388 - auto update sphinx version

Pull Request - State: closed - Opened by jeremyleung521 8 months ago - 1 comment
Labels: CI maintenance

#387 - w_multi_west ibstates fix

Pull Request - State: closed - Opened by jeremyleung521 8 months ago - 1 comment
Labels: bug

#386 - Pinning to Numpy < 2

Pull Request - State: closed - Opened by jeremyleung521 8 months ago - 1 comment
Labels: bug, dependencies

#385 - allow tstate files to contain empty line(s) and comments

Pull Request - State: closed - Opened by jeremyleung521 8 months ago - 2 comments
Labels: bug, enhancement

#384 - Fix to make sure recursive bin labels match up with bins index

Pull Request - State: closed - Opened by jeremyleung521 8 months ago - 2 comments
Labels: bug

#383 - [pre-commit.ci] pre-commit autoupdate

Pull Request - State: closed - Opened by pre-commit-ci[bot] 8 months ago - 1 comment

#382 - Allow custom binning through haMSM restarting plugin

Pull Request - State: closed - Opened by jeremyleung521 9 months ago - 1 comment
Labels: enhancement

#381 - [pre-commit.ci] pre-commit autoupdate

Pull Request - State: closed - Opened by pre-commit-ci[bot] 9 months ago - 1 comment
Labels: CI maintenance

#380 - fix nested-yaml bug

Pull Request - State: closed - Opened by jeremyleung521 10 months ago - 1 comment

#379 - Bump codecov/codecov-action from 3 to 4

Pull Request - State: closed - Opened by dependabot[bot] 10 months ago - 2 comments
Labels: dependencies

#378 - Bump pypa/cibuildwheel from 2.16.2 to 2.16.5

Pull Request - State: closed - Opened by dependabot[bot] 10 months ago - 1 comment
Labels: dependencies

#377 - [pre-commit.ci] pre-commit autoupdate

Pull Request - State: closed - Opened by pre-commit-ci[bot] 10 months ago - 1 comment

#376 - Fixed a bug in YAMLConfig when creating nested new entries

Pull Request - State: open - Opened by SHZ66 10 months ago - 1 comment
Labels: bug

#375 - Dropping `oldest-supported-numpy` for python>=3.9

Pull Request - State: closed - Opened by jeremyleung521 10 months ago - 1 comment
Labels: dependencies

#374 - NumPy2 support fix

Pull Request - State: closed - Opened by alexmgoldberg 10 months ago - 1 comment
Labels: dependencies

#373 - Traj reading goes silently rogue for big systems

Issue - State: open - Opened by Poruthoor 10 months ago - 3 comments
Labels: enhancement, Error Messages Improvement

#372 - TRACKING: Numpy 2.0 support

Issue - State: open - Opened by jeremyleung521 11 months ago - 5 comments
Labels: dependencies

#371 - [pre-commit.ci] pre-commit autoupdate

Pull Request - State: closed - Opened by pre-commit-ci[bot] 11 months ago - 1 comment
Labels: CI maintenance

#370 - Bump actions/upload-artifact from 3 to 4

Pull Request - State: closed - Opened by dependabot[bot] 11 months ago - 2 comments
Labels: dependencies, CI maintenance

#369 - Bump actions/setup-python from 4 to 5

Pull Request - State: closed - Opened by dependabot[bot] 11 months ago - 1 comment
Labels: dependencies, CI maintenance

#368 - Bump actions/download-artifact from 3 to 4

Pull Request - State: closed - Opened by dependabot[bot] 11 months ago - 2 comments
Labels: dependencies, CI maintenance

#367 - Bump github/codeql-action from 2 to 3

Pull Request - State: closed - Opened by dependabot[bot] 11 months ago - 1 comment
Labels: dependencies, CI maintenance

#366 - [pre-commit.ci] pre-commit autoupdate

Pull Request - State: closed - Opened by pre-commit-ci[bot] 11 months ago - 1 comment
Labels: CI maintenance

#365 - Squashing w_multi_west bugs

Pull Request - State: closed - Opened by jeremyleung521 12 months ago - 1 comment
Labels: bug, enhancement

#364 - Bump conda-incubator/setup-miniconda from 2 to 3

Pull Request - State: closed - Opened by dependabot[bot] 12 months ago - 1 comment
Labels: dependencies

#363 - Running pytests in parallel

Pull Request - State: open - Opened by jeremyleung521 12 months ago - 2 comments
Labels: CI maintenance

#362 - [pre-commit.ci] pre-commit autoupdate

Pull Request - State: closed - Opened by pre-commit-ci[bot] about 1 year ago - 1 comment

#361 - Documentation typo fixes

Pull Request - State: closed - Opened by jeremyleung521 about 1 year ago - 1 comment

#360 - Unpin pytables version requirement for python=3.8

Pull Request - State: closed - Opened by jeremyleung521 about 1 year ago - 1 comment

#359 - [pre-commit.ci] pre-commit autoupdate

Pull Request - State: closed - Opened by pre-commit-ci[bot] about 1 year ago - 1 comment

#358 - [pre-commit.ci] pre-commit autoupdate

Pull Request - State: closed - Opened by pre-commit-ci[bot] about 1 year ago - 1 comment