Ecosyste.ms: Issues

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GitHub / welch-lab/MultiVelo issues and pull requests

#45 - Subsetting before Multivelo analysis

Issue - State: open - Opened by Dalhte 3 months ago - 1 comment

#44 - np.all(nn_cells == adata_atac.obs_names)

Issue - State: closed - Opened by Dalhte 4 months ago - 2 comments

#43 - knn_smooth_chrom error: umap

Issue - State: open - Opened by bhhlee 4 months ago

#42 - 'SparseCSCView' object has no attribute 'A'

Issue - State: open - Opened by kalanir 4 months ago - 8 comments
Labels: bug

#41 - multivelo.recover_dynamics_chrom function output .layers[["fit_state']]

Issue - State: open - Opened by siyao-liu 6 months ago - 3 comments

#39 - Unpaired RNA and ATAC

Issue - State: closed - Opened by SITRR 10 months ago - 3 comments

#38 - Velocyto .loom file creation

Issue - State: open - Opened by AlessiaLeclercq about 1 year ago - 1 comment

#35 - cannot read example data 10X_multiome_mouse_brain.loom

Issue - State: closed - Opened by wenhu0701 about 1 year ago - 1 comment

#34 - Cannot reproduce Fig4a in the SHARE-seq example

Issue - State: closed - Opened by xixi-cathy about 1 year ago - 3 comments

#33 - SHARE-seq mouse skin velocyto output

Issue - State: open - Opened by chelseabright96 about 1 year ago - 2 comments

#32 - how to create DTW ?

Issue - State: open - Opened by SinghalDivya over 1 year ago - 7 comments

#31 - Aggregating peaks returns empty anndata object

Issue - State: closed - Opened by MoritzTh over 1 year ago - 1 comment

#30 - Integrating several samples, vanishing genes :)

Issue - State: closed - Opened by Dalhte over 1 year ago - 4 comments

#29 - aggregating peaks without 10x feature linkage

Issue - State: open - Opened by jhong26 over 1 year ago - 2 comments

#28 - ValueError: arange: cannot compute length

Issue - State: closed - Opened by franciskim-yonsei over 1 year ago - 7 comments

#27 - cell annotations for HSPC dataset

Issue - State: open - Opened by waltno over 1 year ago - 1 comment

#26 - ZeroDivisionError: division by zero in mv.knn_smooth_chrom

Issue - State: open - Opened by rdf1993 over 1 year ago - 5 comments

#25 - Multi-omic

Issue - State: open - Opened by zhangqc723 over 1 year ago - 1 comment

#22 - error while calculating latent_time

Issue - State: closed - Opened by SinghalDivya over 1 year ago - 17 comments

#20 - Question re: root cells in latent time / velocity streams

Issue - State: open - Opened by ishahakm almost 2 years ago - 2 comments

#18 - ModuleNotFoundError: No module named 'importlib.metadata'

Issue - State: closed - Opened by AnaAzambuja almost 2 years ago - 11 comments

#17 - MultiVelo for multipo samples

Issue - State: open - Opened by Lei-Guo almost 2 years ago - 1 comment

#16 - 'multivelo.velocity_embedding_stream' plotting

Issue - State: open - Opened by WangRong423 almost 2 years ago - 1 comment

#13 - "TypeError...invalid key" during mv.recover_dynamics_chrom()

Issue - State: closed - Opened by anderswe about 2 years ago - 2 comments

#12 - Questions about error "arange: cannot compute length"

Issue - State: closed - Opened by WangRong423 about 2 years ago - 3 comments

#11 - Velocity/pseudotime inconsistencies

Issue - State: open - Opened by Lobbii about 2 years ago - 2 comments

#7 - Cannot subset using adata_rna = adata_rna[cell_annot.index,:]

Issue - State: closed - Opened by JasonOSS over 2 years ago - 5 comments

#6 - Multivelo recover_dynamics_chrom function question

Issue - State: closed - Opened by AlMuCan over 2 years ago - 3 comments

#5 - Questions about error "cannot compute length" at line 1478.

Issue - State: closed - Opened by Aitar over 2 years ago - 5 comments

#4 - Questions about multiple sample analysis

Issue - State: closed - Opened by WangRong423 over 2 years ago - 4 comments

#3 - How to build GRN

Issue - State: open - Opened by Dan-121 over 2 years ago - 2 comments

#2 - import multivelo KeyError

Issue - State: closed - Opened by mossconfuse almost 3 years ago - 4 comments

#1 - Missing cellranger file

Issue - State: closed - Opened by longfeili5170 almost 3 years ago - 5 comments