Ecosyste.ms: Issues

An open API service for providing issue and pull request metadata for open source projects.

GitHub / weecology/EvergladesTools issues and pull requests

#170 - rio -v mbtiles too slow but fast with resampling

Issue - State: open - Opened by henrykironde 10 months ago - 8 comments

#168 - Use mapbox Python API for uploading

Pull Request - State: open - Opened by henrykironde 11 months ago - 2 comments

#167 - [WIP] adding auth page for current year nests

Pull Request - State: closed - Opened by bw4sz almost 1 year ago

#166 - dependency compatibility

Issue - State: open - Opened by henrykironde about 1 year ago - 5 comments

#165 - Requires Pip as part of the deps

Pull Request - State: closed - Opened by henrykironde about 1 year ago

#164 - Load conda and use absolute paths

Pull Request - State: closed - Opened by henrykironde about 1 year ago

#163 - Use 2 GPUS

Pull Request - State: closed - Opened by henrykironde about 1 year ago

#162 - Allow updating all mapbox imagery using snakemake workflow

Pull Request - State: closed - Opened by ethanwhite about 1 year ago - 1 comment

#161 - Update conda environment

Pull Request - State: closed - Opened by bw4sz about 1 year ago - 1 comment

#160 - Create everglades_workflow.sh

Pull Request - State: closed - Opened by henrykironde about 1 year ago

#159 - Update to newest species classification model

Issue - State: open - Opened by ethanwhite about 1 year ago

#158 - Add documentation for working with experiments

Issue - State: open - Opened by ethanwhite about 1 year ago

#157 - Add cron job for nightly runs of workflow

Issue - State: closed - Opened by ethanwhite about 1 year ago - 1 comment

#156 - Add ability to force mapbox update via workflow

Issue - State: closed - Opened by ethanwhite about 1 year ago - 1 comment

#155 - Add instructions for exploring new data and imagery

Pull Request - State: closed - Opened by ethanwhite about 1 year ago

#154 - Jumping Birds

Issue - State: open - Opened by skmorgane over 1 year ago

#153 - Guide to setup MAPBOX_ACCESS_TOKEN

Pull Request - State: closed - Opened by henrykironde over 1 year ago

#152 - Correctly name maps on mapbox

Pull Request - State: closed - Opened by ethanwhite over 1 year ago

#151 - Update bird and nest predictions

Pull Request - State: closed - Opened by ethanwhite over 1 year ago

#149 - Duplication within Vacation 5/26/2022 Vacation.

Issue - State: closed - Opened by bw4sz over 1 year ago - 4 comments

#148 - /orange/ versus /blue storage

Issue - State: closed - Opened by bw4sz over 1 year ago - 5 comments

#147 - Use YAPF to enforce chromium style

Pull Request - State: closed - Opened by henrykironde almost 2 years ago

#146 - [WIP]: Update Conda package requirements

Pull Request - State: closed - Opened by henrykironde almost 2 years ago - 2 comments

#145 - Update shiny data loading to match updated data structure

Pull Request - State: closed - Opened by ethanwhite almost 2 years ago

#144 - Add active tracking of bird_id through full workflow

Pull Request - State: closed - Opened by ethanwhite almost 2 years ago - 1 comment

#143 - Replace AlleyNorth_02_13_2020.tif orthomosaic with compressed version

Issue - State: closed - Opened by ethanwhite almost 2 years ago - 1 comment

#142 - Full rerun of predictions

Pull Request - State: closed - Opened by ethanwhite almost 2 years ago

#141 - Confirm Syncing Dropbox to HiperGator

Issue - State: closed - Opened by henrykironde almost 2 years ago

#140 - Add CypressCity_05_25_2022_A orthomosaic

Issue - State: closed - Opened by ethanwhite almost 2 years ago - 1 comment

#139 - Handle primary and non-primary flights differently

Pull Request - State: closed - Opened by ethanwhite almost 2 years ago

#138 - Add updated nest and bird detections

Pull Request - State: closed - Opened by ethanwhite almost 2 years ago

#137 - Add mapbox to snakemake workflow

Pull Request - State: closed - Opened by ethanwhite almost 2 years ago - 2 comments

#136 - Investigate issues with AlleyNorth_02_13_2020_projected mapbox upload

Issue - State: closed - Opened by ethanwhite almost 2 years ago - 1 comment

#135 - Update bird and nest predictions with new/fixed data

Pull Request - State: closed - Opened by ethanwhite almost 2 years ago

#134 - Switch from append to concat for combining geodataframes

Pull Request - State: closed - Opened by ethanwhite almost 2 years ago - 2 comments

#133 - WIP: Switch from append to concat for combining geodataframes

Pull Request - State: closed - Opened by ethanwhite almost 2 years ago - 2 comments

#132 - Add nest components of workflow to snakemake

Pull Request - State: closed - Opened by ethanwhite almost 2 years ago - 5 comments

#131 - Remove use of deprected dataframe.append

Issue - State: closed - Opened by ethanwhite almost 2 years ago

#130 - Fix orthomosaic projection issues

Issue - State: closed - Opened by ethanwhite almost 2 years ago - 3 comments

#129 - Rename 2020 Jetport folder to JetportSouth

Issue - State: closed - Opened by ethanwhite almost 2 years ago - 1 comment

#128 - Possible simple(ish) approach to nest detection pipeline

Issue - State: open - Opened by ethanwhite almost 2 years ago - 1 comment

#127 - Update nest and bird predictions after data fixes

Pull Request - State: closed - Opened by ethanwhite almost 2 years ago

#126 - Update bird and nest predictions after data fixes

Pull Request - State: closed - Opened by ethanwhite almost 2 years ago - 1 comment

#125 - 6thBridge_04_01_2020 erroring in predict.py

Issue - State: closed - Opened by ethanwhite almost 2 years ago - 1 comment

#124 - 6thBridge_04_01_2020 orthos are a mess

Issue - State: closed - Opened by ethanwhite almost 2 years ago - 2 comments

#123 - Remove threshold from app

Pull Request - State: closed - Opened by ethanwhite almost 2 years ago - 1 comment

#122 - Add updated bird and nest predictions

Pull Request - State: closed - Opened by ethanwhite almost 2 years ago

#120 - Create output folder for mapbox projections if needed

Pull Request - State: closed - Opened by ethanwhite almost 2 years ago

#119 - Cleanup non-standard file names for orthomosaics

Issue - State: closed - Opened by ethanwhite almost 2 years ago - 1 comment

#118 - Merge multi-file orthomosaics

Issue - State: closed - Opened by ethanwhite almost 2 years ago - 2 comments

#117 - Fix and cleanup mapbox code

Pull Request - State: closed - Opened by ethanwhite almost 2 years ago

#116 - mbtiles builds failing for some orthomosaics

Issue - State: closed - Opened by ethanwhite almost 2 years ago - 1 comment

#115 - Move web mercator transform for mapbox to project_orthos.py

Issue - State: closed - Opened by ethanwhite almost 2 years ago

#114 - (Re)create Orthomosaics

Issue - State: closed - Opened by ethanwhite almost 2 years ago - 6 comments

#113 - upload_mapbox.py not passing along errors

Issue - State: closed - Opened by ethanwhite almost 2 years ago - 1 comment

#112 - Update snakefile

Pull Request - State: closed - Opened by henrykironde almost 2 years ago

#111 - Cleanup Dropbox orthomosaic naming and locations

Issue - State: closed - Opened by ethanwhite about 2 years ago - 1 comment

#110 - Nest detect refactor

Pull Request - State: closed - Opened by henrykironde about 2 years ago - 1 comment

#109 - Add bird ID tracking to nest detections

Pull Request - State: closed - Opened by ethanwhite about 2 years ago - 1 comment

#108 - Missing imagery on mapbox (and imagery with issues)

Issue - State: closed - Opened by ethanwhite about 2 years ago - 7 comments

#107 - Source clean up and refactoring

Pull Request - State: closed - Opened by henrykironde about 2 years ago

#106 - Add nest detection to snakemake workflow

Issue - State: closed - Opened by ethanwhite about 2 years ago - 1 comment

#105 - Don't update the dropbox?

Issue - State: closed - Opened by bw4sz over 2 years ago - 4 comments

#104 - Do we need to project mosaics before predicting birds?

Issue - State: closed - Opened by bw4sz over 2 years ago - 3 comments

#103 - Update README to reflect current snakemake workflow

Pull Request - State: closed - Opened by ethanwhite over 2 years ago - 1 comment

#102 - Re organize tests

Pull Request - State: closed - Opened by henrykironde over 2 years ago - 1 comment

#101 - Remove IDE related files

Pull Request - State: closed - Opened by henrykironde over 2 years ago

#99 - Rewrite README to reflect new Snakemake workflow

Issue - State: closed - Opened by ethanwhite over 2 years ago - 2 comments

#98 - Make upload_to_mapbox run on a single file

Issue - State: closed - Opened by ethanwhite over 2 years ago - 1 comment

#97 - Document process of getting and using mapbox tokens

Issue - State: closed - Opened by ethanwhite over 2 years ago - 1 comment

#96 - Add mapbox processing and upload steps to snakemake

Issue - State: closed - Opened by ethanwhite over 2 years ago - 1 comment

#95 - Separate projection, upload, and push to mapbox

Issue - State: closed - Opened by ethanwhite over 2 years ago - 1 comment

#94 - Add test suite

Issue - State: open - Opened by ethanwhite over 2 years ago - 2 comments

#93 - Add nest detection to snakemake

Issue - State: closed - Opened by ethanwhite over 2 years ago - 2 comments

#91 - Make nest_detection.py run on a single ortho at a time

Issue - State: closed - Opened by ethanwhite over 2 years ago - 1 comment

#90 - Use bird IDs to filter controls in nest experiments

Issue - State: closed - Opened by ethanwhite over 2 years ago - 1 comment

#89 - Add bird IDs associated with nest to nest detector output

Issue - State: closed - Opened by ethanwhite over 2 years ago - 1 comment

#88 - Add consecutive detections to nest detector

Pull Request - State: closed - Opened by ethanwhite over 2 years ago

#87 - Prevent multiple nest matches from same date

Pull Request - State: closed - Opened by ethanwhite over 2 years ago - 2 comments

#86 - Remove app threshold

Pull Request - State: closed - Opened by skmorgane over 2 years ago - 1 comment

#85 - Nest detector still includes more than one bird/date

Issue - State: closed - Opened by ethanwhite over 2 years ago - 1 comment

#84 - Shift to snakemake workflow for bird prediction

Pull Request - State: closed - Opened by ethanwhite over 2 years ago

#83 - Strange tile in mapbox orthomosaic

Issue - State: open - Opened by skmorgane over 2 years ago - 1 comment

#80 - Clean up old Jerrod 2021 file

Issue - State: closed - Opened by ethanwhite over 2 years ago - 1 comment

#77 - Move to snakemake for workflow management

Issue - State: closed - Opened by ethanwhite over 2 years ago - 1 comment

#65 - Large numbers of false positives in Vacation 2021

Issue - State: open - Opened by ethanwhite about 3 years ago - 1 comment

#63 - Check if actually training on empty tiles

Issue - State: closed - Opened by ethanwhite about 3 years ago - 1 comment

#62 - Are empty frames actually influencing the loss?

Issue - State: closed - Opened by ethanwhite about 3 years ago - 1 comment

#61 - WI non-max suppression

Issue - State: closed - Opened by ethanwhite about 3 years ago - 2 comments

#51 - Display detected nests across entire time-series

Issue - State: closed - Opened by ethanwhite about 3 years ago - 1 comment

#42 - Implement negative mining to reduce lily pad detections by bird detector

Issue - State: closed - Opened by ethanwhite about 3 years ago - 3 comments

#38 - Image file problems to be fixed

Issue - State: closed - Opened by ethanwhite about 3 years ago - 8 comments

#35 - Predicted Counts page not currently working

Issue - State: closed - Opened by ethanwhite about 3 years ago - 1 comment

#25 - Setup snakemake pipeline(s)

Issue - State: closed - Opened by ethanwhite about 3 years ago - 1 comment

#16 - crop_image.py

Issue - State: closed - Opened by gmyenni about 3 years ago - 1 comment