Ecosyste.ms: Issues

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GitHub / weecology/DeepForest issues and pull requests

#435 - Ignore warnings generated due to light weight testing

Pull Request - State: closed - Opened by ethanwhite over 1 year ago - 1 comment

#434 - Yapf based code cleanup

Pull Request - State: closed - Opened by ethanwhite over 1 year ago - 1 comment

#433 - Move ignoring setup.py in testing to conftest.py

Pull Request - State: closed - Opened by ethanwhite over 1 year ago - 1 comment

#432 - Remove link to demo site

Pull Request - State: closed - Opened by ethanwhite over 1 year ago - 2 comments

#431 - Update FAQ.md

Pull Request - State: closed - Opened by bw4sz over 1 year ago - 1 comment

#430 - Between epoch time is very slow.

Issue - State: closed - Opened by bw4sz over 1 year ago - 1 comment

#429 - main.evaluate does not work with batch_size > 1 and images of different lengths.

Issue - State: open - Opened by bw4sz over 1 year ago - 6 comments
Labels: bug, good first issue

#428 - Create a simpler way to skip classification loss given unknown labeled samples.

Issue - State: open - Opened by bw4sz over 1 year ago
Labels: Machine Learning

#427 - Return_plot when specifying a numpy array in predict_tile yields an error.

Issue - State: closed - Opened by bw4sz over 1 year ago - 3 comments
Labels: good first issue

#426 - package import takes too long

Issue - State: closed - Opened by bw4sz over 1 year ago - 1 comment
Labels: bug, good first issue, dependencies

#425 - force yapf styling inplace.

Pull Request - State: closed - Opened by bw4sz over 1 year ago

#424 - Increase min version for torchvision

Pull Request - State: closed - Opened by ethanwhite over 1 year ago - 1 comment

#423 - [WIP] Testing on current Python

Pull Request - State: closed - Opened by ethanwhite over 1 year ago

#422 - Update use of pivot to accomodate pandas 2.0

Issue - State: closed - Opened by ethanwhite over 1 year ago

#421 - Add named arguments in pivot for pandas 2.0

Pull Request - State: closed - Opened by ethanwhite over 1 year ago - 2 comments

#420 - Bird model threshold

Pull Request - State: closed - Opened by bw4sz over 1 year ago - 2 comments

#419 - Change the default score threshold for the bird release.

Issue - State: closed - Opened by bw4sz over 1 year ago - 1 comment

#418 - Input Data

Issue - State: closed - Opened by NickHarnau over 1 year ago - 1 comment

#417 - Remove .to(CUDA) statements

Pull Request - State: closed - Opened by Pranav-Saxena over 1 year ago - 3 comments

#416 - Removed .to(CUDA) statements

Pull Request - State: closed - Opened by Pranav-Saxena over 1 year ago

#415 - Bug fix plot predictions

Pull Request - State: closed - Opened by bw4sz over 1 year ago - 9 comments

#414 - Should dataframes with empty predictions have a class recall of None or 0?

Issue - State: open - Opened by bw4sz over 1 year ago - 1 comment
Labels: Performance, Docs, Machine Learning

#413 - Handled alpha channel with tests passing #392

Pull Request - State: closed - Opened by Mu-Magdy over 1 year ago - 3 comments

#412 - Replace custom iou module with torchmetrics jaccard index.

Issue - State: closed - Opened by bw4sz over 1 year ago

#411 - Stronger CI for maintaining model consistency

Issue - State: open - Opened by bw4sz over 1 year ago - 3 comments
Labels: dependencies, Docs

#410 - Update predict functions to align with pytorch lightning API

Pull Request - State: closed - Opened by bw4sz over 1 year ago - 8 comments

#409 - Pass Python version to mamba correctly

Pull Request - State: closed - Opened by ethanwhite over 1 year ago - 1 comment

#408 - Reduce the size of the DeepForest git repo history.

Issue - State: open - Opened by bw4sz over 1 year ago - 2 comments
Labels: dependencies

#407 - Remove .to(CUDA) statements to improve speed and unify with pytorch lightning framework.

Issue - State: closed - Opened by bw4sz over 1 year ago - 4 comments
Labels: Performance

#405 - Xmin,Ymin,Xmax,Ymax

Issue - State: closed - Opened by NickHarnau over 1 year ago - 1 comment

#404 - Profile the predict_tile method.

Issue - State: open - Opened by bw4sz over 1 year ago - 6 comments
Labels: good first issue

#403 - Update to new pytorch-lightning API

Pull Request - State: closed - Opened by ethanwhite over 1 year ago - 12 comments

#402 - Add docs page on software and research using deepforest

Pull Request - State: closed - Opened by ethanwhite over 1 year ago - 3 comments

#400 - Ask user if they want to download the latest model. #321 with test cases passed

Pull Request - State: closed - Opened by ayeankit over 1 year ago - 4 comments

#399 - Ask user if they want to download the latest model. #321 with test cases passed

Pull Request - State: closed - Opened by ayeankit over 1 year ago - 1 comment

#398 - added drop alpha handler to predict_tile and predict_image and created unittest #392

Pull Request - State: closed - Opened by Mu-Magdy over 1 year ago - 6 comments

#397 - Document what is being trained in fine-tuning (and multi-class modeling)

Issue - State: open - Opened by ethanwhite over 1 year ago
Labels: good first issue, Docs

#396 - Modular model structure

Issue - State: closed - Opened by bw4sz over 1 year ago - 1 comment

#395 - Multiple patch size ensembling following by non-max suppression to make predict_tile more resilient.

Issue - State: open - Opened by bw4sz over 1 year ago - 1 comment
Labels: Machine Learning

#393 - standardize the way we refer to a model in the README

Pull Request - State: closed - Opened by bw4sz over 1 year ago

#392 - Create a better error handling for RGBA images.

Issue - State: open - Opened by bw4sz over 1 year ago - 9 comments
Labels: good first issue

#391 - OMP: Error #15 during Getting Started

Issue - State: closed - Opened by mparent3 over 1 year ago - 7 comments

#390 - Can you do it locally in Python?

Issue - State: closed - Opened by stphtan94117 over 1 year ago - 3 comments

#389 - Detecting crown contours

Issue - State: closed - Opened by aloboa over 1 year ago - 1 comment

#388 - Ask user if they want to download the latest model. #321 with test cases

Pull Request - State: closed - Opened by ayeankit over 1 year ago - 2 comments

#387 - Ask user if they want to download the latest model. #321 with test cases

Pull Request - State: closed - Opened by ayeankit over 1 year ago - 2 comments

#386 - Demo does not work

Issue - State: closed - Opened by aloboa over 1 year ago - 4 comments

#385 - Apply yapf

Pull Request - State: closed - Opened by henrykironde over 1 year ago - 2 comments

#384 - improve Deepforest developer docs

Pull Request - State: closed - Opened by henrykironde over 1 year ago - 1 comment

#383 - Add explanation to docs on non-max suppression.

Issue - State: open - Opened by bw4sz over 1 year ago - 2 comments
Labels: Docs

#382 - Ask user if they want to download the latest model. #321

Pull Request - State: closed - Opened by ayeankit over 1 year ago - 3 comments

#381 - Fixup issues with 1.2.4 release

Issue - State: closed - Opened by ethanwhite almost 2 years ago

#380 - More model registry to cometML?

Issue - State: closed - Opened by bw4sz almost 2 years ago - 2 comments
Labels: enhancement, API

#379 - [WIP]: Test, Azure should pass

Pull Request - State: closed - Opened by henrykironde almost 2 years ago

#378 - conda-incubator setup-miniconda fails on linux

Issue - State: closed - Opened by henrykironde almost 2 years ago

#377 - More bird model datasets

Issue - State: open - Opened by bw4sz almost 2 years ago - 16 comments
Labels: Ideas for Machine Learning!

#376 - Change mamba actions

Pull Request - State: closed - Opened by henrykironde almost 2 years ago - 2 comments

#375 - Fixed deprecation warning

Pull Request - State: closed - Opened by Om-Doiphode almost 2 years ago - 14 comments

#374 - updated argument pretrained to weights as per torchvision v0.13

Pull Request - State: closed - Opened by labeeb-7z almost 2 years ago - 2 comments

#373 - Current conda forge release is 3 versions out of date

Issue - State: closed - Opened by ethanwhite almost 2 years ago

#372 - Customized augmentation questions

Issue - State: closed - Opened by aleksandraradecka1 almost 2 years ago - 1 comment

#371 - Crop size question

Issue - State: closed - Opened by aleksandraradecka1 almost 2 years ago - 3 comments

#370 - No background class

Issue - State: open - Opened by beaulima almost 2 years ago - 8 comments
Labels: good first issue, Docs

#369 - Pytorch deprecation warning when running main.deepforest()

Issue - State: closed - Opened by youngdjn almost 2 years ago - 7 comments

#368 - predict_tile doesn't add image_path to boxes df

Issue - State: closed - Opened by youngdjn almost 2 years ago - 2 comments

#367 - Predict_tile needs image path column

Pull Request - State: closed - Opened by bw4sz almost 2 years ago - 1 comment

#366 - Cross image registration

Issue - State: open - Opened by bw4sz almost 2 years ago
Labels: Machine Learning

#365 - Issue 361

Pull Request - State: closed - Opened by bw4sz about 2 years ago - 1 comment

#364 - definition of a Tree?

Issue - State: closed - Opened by ThomasHaarlem about 2 years ago - 6 comments

#363 - add colab link to FAQ

Pull Request - State: closed - Opened by bw4sz about 2 years ago

#362 - Add examples of projects using DeepForest to the README

Issue - State: closed - Opened by ethanwhite about 2 years ago - 2 comments

#360 - Transfer learning

Issue - State: closed - Opened by Ciaran1981 about 2 years ago - 8 comments

#359 - Bug fix for predict image

Pull Request - State: closed - Opened by bw4sz about 2 years ago

#358 - Bug fix for predict image

Pull Request - State: closed - Opened by bw4sz about 2 years ago

#357 - Training model on OSBS Dataset

Pull Request - State: closed - Opened by dassaniansh about 2 years ago - 5 comments

#356 - Training and Testing model on urban tree detection data

Pull Request - State: closed - Opened by dassaniansh about 2 years ago - 1 comment

#355 - Evaluation of NeonTreeEvaluation dataset on various resolutions

Pull Request - State: closed - Opened by dassaniansh about 2 years ago - 1 comment

#354 - No predictions made after Training true orthophoto (True-DOP)

Issue - State: closed - Opened by pythonlover22 about 2 years ago - 1 comment

#353 - create new post-processing workflow

Pull Request - State: closed - Opened by bw4sz about 2 years ago

#351 - Auto roll images if channel is last

Issue - State: closed - Opened by bw4sz about 2 years ago

#349 - Update minimum dependency versions requirements

Pull Request - State: closed - Opened by ethanwhite about 2 years ago

#348 - Make the dataloader faster

Issue - State: closed - Opened by bw4sz about 2 years ago - 1 comment

#347 - Allow users to modify input size

Issue - State: open - Opened by bw4sz about 2 years ago - 2 comments
Labels: Machine Learning

#346 - rename the on_epoch_end to on_train_epoch_end to match pl convention

Pull Request - State: closed - Opened by bw4sz about 2 years ago - 1 comment

#345 - Update hook names

Issue - State: closed - Opened by bw4sz about 2 years ago - 1 comment

#344 - change accelerator argument, following #343 and #342

Pull Request - State: closed - Opened by bw4sz about 2 years ago

#343 - Add documentation for trainer strategy

Issue - State: closed - Opened by bw4sz about 2 years ago

#341 - Model checkpoint

Pull Request - State: closed - Opened by bw4sz about 2 years ago

#340 - Integrate other large datasets.

Issue - State: open - Opened by bw4sz about 2 years ago - 37 comments
Labels: Performance, Machine Learning

#339 - "Tree" Label when using bird_release.

Issue - State: closed - Opened by bw4sz about 2 years ago

#338 - "ReferenceError: weakly-referenced object no longer exists" on training

Issue - State: closed - Opened by taucler about 2 years ago - 23 comments

#337 - DeepForest on regional scale.

Issue - State: closed - Opened by pythonlover22 about 2 years ago - 6 comments

#336 - ImportError: cannot import name 'main' from 'deepforest'

Issue - State: closed - Opened by ThomasHaarlem over 2 years ago - 2 comments

#335 - Loss function is not computed.

Issue - State: closed - Opened by luforestal over 2 years ago - 4 comments