Ecosyste.ms: Issues

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GitHub / wdecoster/surpyvor issues and pull requests

#22 - surpyvor for SNPs

Issue - State: closed - Opened by sonalhenson over 1 year ago - 4 comments

#21 - SUPP_VEC and Venn Diagram

Issue - State: closed - Opened by agolicz over 2 years ago - 1 comment

#20 - query on surpyvor prf

Issue - State: open - Opened by prasundutta87 about 3 years ago - 5 comments
Labels: enhancement

#19 - prf option

Issue - State: open - Opened by dKlee99 about 3 years ago

#18 - extracting variants list unique to a specific group

Issue - State: closed - Opened by dKlee99 about 3 years ago - 5 comments

#17 - about surpyvor highconf

Issue - State: closed - Opened by prasundutta87 about 3 years ago - 4 comments

#16 - cannot import 'plots'

Issue - State: open - Opened by petrichor-zzz over 3 years ago - 3 comments

#15 - Difference in common variants in Venn diagram

Issue - State: closed - Opened by prasundutta87 over 3 years ago - 3 comments

#13 - SURVIVOR update

Issue - State: closed - Opened by cccnrc about 4 years ago - 1 comment

#12 - seems I need another f" when starting on a new line

Pull Request - State: closed - Opened by wdecoster over 4 years ago

#11 - missing options for highsens and highconf

Issue - State: closed - Opened by sclan over 4 years ago - 4 comments

#10 - latest conda packages generated inconsistent venn and upset plots

Issue - State: closed - Opened by sclan over 4 years ago - 2 comments

#9 - adding code to remove accidental 2D/1D^2 reads

Pull Request - State: closed - Opened by wdecoster over 4 years ago

#8 - "Incompatibility" between surpyvor upset and GATK 4 Germline CNV caller data

Issue - State: closed - Opened by Tintest over 4 years ago - 16 comments

#7 - Haplomerge

Pull Request - State: closed - Opened by wdecoster over 4 years ago

#6 - surpyvor merge fail, but bcftools merge doesn't

Issue - State: closed - Opened by Tintest over 4 years ago - 8 comments

#5 - surpyvor prf

Issue - State: closed - Opened by Nazeeefa over 4 years ago - 8 comments

#4 - adding minimal length filter

Pull Request - State: closed - Opened by wdecoster almost 5 years ago

#3 - surpyvor upset

Issue - State: closed - Opened by Nazeeefa over 5 years ago - 9 comments

#2 - Dependencies and usage

Issue - State: closed - Opened by Nazeeefa over 5 years ago - 5 comments

#1 - using the sample ID from the first vcf file when using vcf_concat

Pull Request - State: closed - Opened by wdecoster over 5 years ago