wdecoster/nanoget issues and pull requests

#34 - New conda release

Issue - State: closed - Opened by jchorl about 1 year ago - 3 comments

#33 - support mixed timestamp formats

Pull Request - State: closed - Opened by jchorl about 1 year ago - 2 comments

#32 - Mixed timestamp offset issues

Issue - State: closed - Opened by jchorl about 1 year ago - 3 comments

#31 - Fix for TypeError: unsupported operand type(s) for -: 'numpy.ndarray' and 'Timestamp' python-BaseException

Pull Request - State: closed - Opened by thomasvangurp about 1 year ago - 2 comments

#30 - function for converting to correct timezone

Pull Request - State: closed - Opened by thomasvangurp about 1 year ago - 2 comments

#29 - fix: convert timezone aware to naive for fastq rich

Pull Request - State: closed - Opened by matinnuhamunada over 1 year ago - 2 comments

#28 - FASTQ average quality score calculation can be faster

Issue - State: closed - Opened by rhpvorderman over 1 year ago - 2 comments

#27 - Bump BAM ref-contig multi-process threshold to 200

Pull Request - State: closed - Opened by SHuang-Broad about 2 years ago

#26 - test.py script fails -- cannot index bam file

Issue - State: closed - Opened by nileshpatra almost 3 years ago - 5 comments

#25 - GitHub releases?

Issue - State: closed - Opened by nileshpatra almost 3 years ago - 1 comment

#24 - Store read identifiers as dtype="string[pyarrow]"

Issue - State: open - Opened by wdecoster about 3 years ago

#23 - Implement downsampling directly in nanoget

Issue - State: open - Opened by wdecoster about 6 years ago

#22 - Update license classifier

Pull Request - State: closed - Opened by cbrueffer about 4 years ago - 1 comment

#21 - Add executable to only create pickle files

Issue - State: closed - Opened by wdecoster over 4 years ago
Labels: enhancement

#20 - License was changed to GPL-3+ but setup.py remains at MIT

Issue - State: closed - Opened by tillea over 4 years ago - 2 comments

#19 - License file is missing from pipy download - please tag your releases here

Issue - State: closed - Opened by tillea over 4 years ago - 1 comment

#18 - Fix to double counting reads that have sup aln

Pull Request - State: closed - Opened by BenjaminSchwessinger over 4 years ago - 4 comments

#17 - Double counting reads that have supplementary alignments

Issue - State: closed - Opened by BenjaminSchwessinger over 4 years ago

#16 - Modification of accuracy calculation.

Pull Request - State: closed - Opened by bsipos about 5 years ago - 1 comment

#15 - Crash with inputs with runs of high number of reads

Issue - State: closed - Opened by kpalin about 5 years ago - 5 comments

#14 - Downcast to signed, instead of unsigned integer.

Pull Request - State: closed - Opened by kpalin about 5 years ago - 1 comment

#13 - nanoget is unable to parse information from BAM file without reference

Issue - State: closed - Opened by jvhaarst over 5 years ago - 5 comments
Labels: enhancement

#12 - Number of threads not controlled when using bam input

Issue - State: closed - Opened by wdecoster about 6 years ago

#11 - Fix start time for method track

Pull Request - State: closed - Opened by wdecoster over 6 years ago

#10 - Fasta mode

Pull Request - State: closed - Opened by wdecoster over 6 years ago