wdecoster/nanofilt issues and pull requests

#67 - multithread max ram options

Issue - State: closed - Opened by ttn1883 7 months ago - 2 comments

#66 - Cant seem to get nanofilt to work on command line?

Issue - State: closed - Opened by DrModupeO 7 months ago - 3 comments

#65 - Quality score

Issue - State: closed - Opened by eesiribloom 9 months ago - 1 comment

#64 - How to get reads with lower than 10 read quality from fastq files by using nanofilt?

Issue - State: closed - Opened by kaanokay almost 2 years ago - 8 comments

#63 - Tagged release for 2.8.0

Issue - State: closed - Opened by skchronicles about 2 years ago - 2 comments

#62 - Error using conda install

Issue - State: closed - Opened by t-rex318 about 2 years ago - 2 comments

#61 - No logfile

Issue - State: closed - Opened by pkerbs about 2 years ago - 2 comments

#60 - - Put first logging instance after basicConfig call

Pull Request - State: closed - Opened by alvanuffelen over 2 years ago - 1 comment

#59 - Incomplete deflate data

Issue - State: closed - Opened by xujiaweiouc almost 3 years ago - 1 comment

#58 - Suggestion: can you make a docker image and share in docker hub

Issue - State: closed - Opened by yzhang-github-pub almost 3 years ago - 1 comment

#57 - Is it possible to process fasta file

Issue - State: closed - Opened by amit4mchiba almost 3 years ago - 7 comments

#56 - Nanostat question

Issue - State: closed - Opened by valentinavan almost 3 years ago - 2 comments

#55 - retaining input directory structure

Issue - State: closed - Opened by mawa86 over 3 years ago - 2 comments

#54 - command not found , No module named 'nanofilt'

Issue - State: closed - Opened by arz19893 over 3 years ago - 1 comment

#53 - file latency issue with nanofilt

Issue - State: closed - Opened by Fatihlrcfs over 3 years ago - 2 comments

#52 - --length and --maxlength in combination with --headcrop and --tailcrop

Issue - State: closed - Opened by PKuperus over 3 years ago - 1 comment

#51 - Order of the command options

Issue - State: closed - Opened by Yutang-ETH over 3 years ago - 2 comments

#50 - no log file output

Issue - State: closed - Opened by hugs314 almost 4 years ago - 18 comments

#49 - NanoFilt produces empty output when tailcrop = 0

Issue - State: closed - Opened by mlosilla almost 4 years ago - 1 comment

#48 - Suggestion

Issue - State: open - Opened by Potatoconomy about 4 years ago - 3 comments

#47 - suggestion : add a brief output report

Issue - State: closed - Opened by mariabernard over 4 years ago - 2 comments

#46 - Installing Nanofilt with Miniconda3

Issue - State: closed - Opened by Stephkoo over 4 years ago - 6 comments

#45 - ID missing from summary file

Issue - State: closed - Opened by Electrocyte over 4 years ago - 1 comment

#44 - Having Trouble Running Simple Filter Command

Issue - State: closed - Opened by Jalapenobadger over 4 years ago - 7 comments

#43 - Nanofilt on a batch of files

Issue - State: closed - Opened by Alxdu almost 5 years ago - 2 comments

#42 - The effect to assembly

Issue - State: closed - Opened by flystar233 about 5 years ago - 1 comment

#41 - tags

Issue - State: closed - Opened by fizwit about 5 years ago - 2 comments

#40 - NanoFilt.py TypeError msg

Issue - State: closed - Opened by marisalim over 5 years ago - 11 comments

#39 - Trimming of long read sequencing data

Issue - State: closed - Opened by mareikepol over 5 years ago - 7 comments
Labels: enhancement

#38 - Multi-thread mode

Issue - State: closed - Opened by ConstantinV over 5 years ago - 3 comments
Labels: enhancement

#37 - error "records in fastq files sholud start with @ character"

Issue - State: closed - Opened by AngLiRNA over 5 years ago - 4 comments

#36 - nanofilt failed to filter data

Issue - State: closed - Opened by maculatus over 5 years ago - 5 comments

#35 - use git tags

Issue - State: closed - Opened by fizwit over 5 years ago - 2 comments

#34 - Make nanofilt independent of nanomath by ave_qual duplication

Pull Request - State: closed - Opened by wdecoster over 5 years ago

#33 - The output file from nanofilt can't be used for other module

Issue - State: closed - Opened by henganl2 over 5 years ago - 2 comments

#32 - conda version outdated?

Issue - State: closed - Opened by leomrtns over 5 years ago - 3 comments

#31 - Question about length and quality filters

Issue - State: closed - Opened by jessMaia almost 6 years ago - 3 comments

#30 - Error NanoFilt

Issue - State: closed - Opened by el-mat almost 6 years ago - 5 comments

#29 - Command example

Issue - State: closed - Opened by francoiskroll almost 6 years ago - 4 comments

#28 - Weird peak in histogram of read length

Issue - State: closed - Opened by Kata-Pa almost 6 years ago - 2 comments

#27 - Installation errors (with Python3)

Issue - State: closed - Opened by pengelgau almost 6 years ago - 3 comments

#26 - NanoFilt Won't run after install

Issue - State: closed - Opened by peflanag almost 6 years ago - 1 comment

#25 - Option for min_QUALITY (logic)or min_LENGTH

Issue - State: closed - Opened by ms-gx about 6 years ago - 2 comments

#24 - use -s the sequencing_summary file to filt

Issue - State: closed - Opened by Riverzrw about 6 years ago - 2 comments

#23 - problem with running the test.sh

Issue - State: closed - Opened by LinXialab over 6 years ago - 2 comments

#22 - input file parameter

Issue - State: closed - Opened by tolot27 over 6 years ago - 9 comments
Labels: enhancement

#21 - native gzip support for stdin

Issue - State: closed - Opened by tolot27 over 6 years ago - 1 comment
Labels: enhancement

#20 - filtering by quality

Issue - State: closed - Opened by damioresegun over 6 years ago - 2 comments

#19 - No module named 'nanofilt'

Issue - State: closed - Opened by jwsbio almost 7 years ago - 3 comments

#18 - NanoFilt won't run on CentOS

Issue - State: closed - Opened by gwaldbieser almost 7 years ago

#17 - In-line help

Issue - State: closed - Opened by genomax almost 7 years ago - 13 comments

#16 - Using a non-zipped file

Issue - State: closed - Opened by bluessherpa almost 7 years ago - 5 comments

#15 - Filtering

Issue - State: closed - Opened by damioresegun about 7 years ago - 8 comments

#14 - doing silent quality check if no minimal quality specified

Pull Request - State: closed - Opened by wdecoster about 7 years ago

#13 - Nanofilt Error

Issue - State: closed - Opened by damioresegun about 7 years ago - 16 comments
Labels: wontfix

#12 - adding logging

Pull Request - State: closed - Opened by wdecoster over 7 years ago

#11 - No unreasonable gc

Pull Request - State: closed - Opened by wdecoster over 7 years ago

#10 - changed synthax of processSummary

Pull Request - State: closed - Opened by wdecoster over 7 years ago

#9 - Added GC filtering functionality

Pull Request - State: closed - Opened by mw55309 over 7 years ago - 1 comment

#8 - setup.py looks for README.rst which doesn't exist

Issue - State: closed - Opened by mw55309 over 7 years ago - 3 comments

#7 - Empty fastq file as output

Issue - State: closed - Opened by eyesmo over 7 years ago - 5 comments

#6 - consistency changes

Pull Request - State: closed - Opened by wdecoster over 7 years ago

#5 - Unable to run NanoFilt after installation using pip

Issue - State: closed - Opened by ksanjeetsinha over 7 years ago - 7 comments

#4 - Null output when head and tail crop len equal

Issue - State: closed - Opened by Adamtaranto over 7 years ago - 3 comments

#3 - File streaming

Issue - State: closed - Opened by Adamtaranto over 7 years ago - 1 comment

#2 - Missing nanoget arg

Issue - State: closed - Opened by Adamtaranto over 7 years ago - 2 comments
Labels: bug

#1 - Nanofilt issue

Issue - State: closed - Opened by catch-minie over 7 years ago - 4 comments

GitHub / wdecoster/nanofilt issues and pull requests