Ecosyste.ms: Issues

An open API service for providing issue and pull request metadata for open source projects.

GitHub / wdecoster/nanocomp issues and pull requests

#78 - NanoComp_quals_violin question

Issue - State: open - Opened by MariBGO 3 months ago - 1 comment

#77 - Compare reads in two FASTQ files based on ReadID

Issue - State: closed - Opened by LogCrab 5 months ago - 2 comments

#76 - Error printing whole nanocomp report

Issue - State: closed - Opened by NikoLichi 6 months ago - 11 comments

#75 - Empty JSON files / want to format and edit font along plot axes

Issue - State: open - Opened by HornDW 9 months ago - 4 comments

#74 - multiple fastq files

Issue - State: open - Opened by lfrangeu 11 months ago - 3 comments

#73 - Got negative values on weighted histogram plot

Issue - State: open - Opened by najohink about 1 year ago - 7 comments

#71 - No static plots are saved due to some kaleido problem

Issue - State: open - Opened by prasundutta87 about 1 year ago - 4 comments

#70 - Scaling problem in OverlayHistograms?

Issue - State: open - Opened by jd3234 about 1 year ago - 1 comment

#69 - non-normalised histogram comparison?

Issue - State: open - Opened by celine304 about 1 year ago - 4 comments

#68 - barcodes missing

Issue - State: closed - Opened by MarieLataretu over 1 year ago - 3 comments

#67 - Length of values (5) does not match length of index (2)

Issue - State: closed - Opened by Ulle22 over 1 year ago - 3 comments

#66 - Error running NanoComp

Issue - State: closed - Opened by ekushele over 1 year ago - 2 comments

#65 - Barcodes in wrong order

Issue - State: closed - Opened by cmfield over 1 year ago - 3 comments

#64 - Change plot(ly) plot theme

Issue - State: open - Opened by sejmodha over 1 year ago - 2 comments
Labels: enhancement

#63 - Fix license string after license change in 6849e36

Pull Request - State: closed - Opened by cbrueffer over 1 year ago - 1 comment

#62 - different total reads for fastq and bam file

Issue - State: closed - Opened by prasundutta87 almost 2 years ago - 2 comments

#61 - Static png files not created

Issue - State: open - Opened by lvann almost 2 years ago

#60 - Weighted Histograms?

Issue - State: closed - Opened by adramir4 almost 2 years ago - 2 comments

#59 - Incorrect order and naming

Issue - State: open - Opened by shannoneagle about 2 years ago - 4 comments

#58 - Bar labels swapped for 'total_throughput' graph

Issue - State: closed - Opened by cdebuck about 2 years ago - 1 comment

#57 - Different timestamp formats causes crash

Issue - State: closed - Opened by schorlton about 2 years ago - 3 comments

#56 - about extreme base call quality score

Issue - State: closed - Opened by prasundutta87 over 2 years ago - 2 comments

#55 - Autoscale outputs

Issue - State: closed - Opened by schorlton over 2 years ago - 3 comments

#54 - NanoStats read number does not match other tools

Issue - State: open - Opened by callumparr over 2 years ago - 1 comment

#53 - kaleido problem with unsupported format random 'p' format?

Issue - State: closed - Opened by callumparr over 2 years ago - 4 comments

#52 - How to modify axis limits/or reduce read length

Issue - State: closed - Opened by albuskilili over 2 years ago - 1 comment

#51 - Use .txt file of filepaths to multiple fastq files as input

Issue - State: closed - Opened by ew367 over 2 years ago - 2 comments

#50 - Feature Request: Pore and cumulative yield comparisons?

Issue - State: closed - Opened by schorlton over 2 years ago - 11 comments

#49 - ValueError

Issue - State: closed - Opened by dKlee99 about 3 years ago - 19 comments

#48 - added sorting of the read counts

Pull Request - State: closed - Opened by iliasbukraa about 3 years ago

#47 - Legend colors

Issue - State: closed - Opened by sefayten about 3 years ago - 2 comments
Labels: enhancement

#46 - NanoComp: error: unrecognized arguments: --names

Issue - State: closed - Opened by arz19893 about 3 years ago - 3 comments

#45 - added plotting of phred graphs and some small reformatting of code

Pull Request - State: closed - Opened by iliasbukraa over 3 years ago

#43 - Seaborn requirement should be added to setup

Issue - State: closed - Opened by seanrj-conagen over 3 years ago - 3 comments

#42 - added html styling (same as NanoPlot)

Pull Request - State: closed - Opened by iliasbukraa over 3 years ago - 1 comment

#41 - Error when using multiple threads for NanoComp

Issue - State: closed - Opened by callumparr over 3 years ago - 9 comments

#40 - TypeError: write_stats() got an unexpected keyword argument 'as_tsv'

Issue - State: closed - Opened by Annie-msi over 3 years ago - 3 comments

#39 - removed subsample function, which is now imported from nanoplotter

Pull Request - State: closed - Opened by iliasbukraa over 3 years ago

#37 - modified compare_sequencing_speed function in compplots.py to plot li…

Pull Request - State: closed - Opened by iliasbukraa over 3 years ago - 1 comment

#36 - rewrote functions n50_barplot/output_barplot/violin_or_box_plot

Pull Request - State: closed - Opened by iliasbukraa over 3 years ago

#35 - DeprecationWarning for nanomath

Issue - State: closed - Opened by PanZiwei almost 4 years ago - 1 comment

#34 - NanoComp fails with ValueError

Issue - State: closed - Opened by utrivedi almost 4 years ago - 4 comments

#33 - Overlaying histograms of percent identity

Issue - State: closed - Opened by wdecoster about 4 years ago - 1 comment
Labels: enhancement

#32 - release tag?

Issue - State: closed - Opened by smoe about 4 years ago - 2 comments

#31 - Update license classifier

Pull Request - State: closed - Opened by cbrueffer about 4 years ago - 1 comment

#30 - Running NanoComp with a pickle file

Issue - State: closed - Opened by AMTZ-ssi about 4 years ago - 3 comments

#28 - reads above quality cutoffs

Issue - State: closed - Opened by LeilyR over 4 years ago - 4 comments

#27 - Add option to get stats with --pickle analogous to NanoPlot

Issue - State: closed - Opened by Sophie-Gallina over 4 years ago - 5 comments

#26 - Calculating N50?

Issue - State: closed - Opened by Mailinnia over 4 years ago - 4 comments

#25 - illumina bam

Issue - State: closed - Opened by aspitaleri over 4 years ago - 7 comments

#24 - Add args.ubam & args.cram

Pull Request - State: closed - Opened by ChristinaPapastolopoulou over 4 years ago - 1 comment

#23 - ValueError: max_workers must be greater than 0

Issue - State: closed - Opened by Nazeeefa over 4 years ago - 5 comments

#20 - Normalized log transformed read length histogram seems wrong

Issue - State: closed - Opened by mldmort about 5 years ago - 4 comments

#19 - Comulativeyieldplot_gigabases raw data

Issue - State: closed - Opened by anja999 about 5 years ago - 14 comments

#18 - NanoComp raw data

Issue - State: closed - Opened by aspitaleri over 5 years ago - 9 comments

#17 - NanoStats "Number of reads" greater than input fastq reads

Issue - State: closed - Opened by kkowalden over 5 years ago - 2 comments

#16 - connection to Plotly-orca fail

Issue - State: closed - Opened by callumparr over 5 years ago - 3 comments

#15 - Barchart throughput should use aligned bases when using bam input

Issue - State: closed - Opened by wdecoster over 5 years ago
Labels: enhancement

#14 - Add cram support

Issue - State: closed - Opened by wdecoster almost 6 years ago - 3 comments
Labels: enhancement

#13 - Discrepancies in stats output between different bam alignments of same fasta file

Issue - State: closed - Opened by ggstatgen almost 6 years ago - 4 comments
Labels: question

#12 - log scale histograms

Issue - State: closed - Opened by tolot27 about 6 years ago - 2 comments
Labels: enhancement

#11 - Number of threads not controlled when using bam input

Issue - State: closed - Opened by wdecoster about 6 years ago - 1 comment

#10 - adding dynamic overlay histograms from plotly

Pull Request - State: closed - Opened by wdecoster over 6 years ago

#9 - Name order not kept in final graphical outputs

Issue - State: closed - Opened by damientully over 6 years ago - 2 comments
Labels: enhancement

#8 - NanoStats.txt file output

Issue - State: closed - Opened by devonorourke over 6 years ago - 2 comments
Labels: bug

#7 - color control

Issue - State: closed - Opened by devonorourke over 6 years ago - 2 comments
Labels: enhancement

#6 - TypeError: 'NoneType' object is not iterable

Issue - State: closed - Opened by SAMtoBAM over 6 years ago - 13 comments

#5 - TypeError: write_stats() got an unexpected keyword argument 'datadfs'

Issue - State: closed - Opened by GabyBG almost 7 years ago - 1 comment

#4 - feature request?

Issue - State: closed - Opened by devonorourke almost 7 years ago - 16 comments

#3 - adding boxplots

Pull Request - State: closed - Opened by wdecoster almost 7 years ago

#2 - moving get input to nanoget

Pull Request - State: closed - Opened by wdecoster almost 7 years ago

#1 - Adding args.names

Pull Request - State: closed - Opened by wdecoster almost 7 years ago