Ecosyste.ms: Issues

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GitHub / wdecoster/methplotlib issues and pull requests

#54 - Bacterial genomes.

Issue - State: closed - Opened by senukobla 11 months ago - 1 comment

#53 - No records for file in in 15_25576970_25685978!

Issue - State: open - Opened by JoukjeKloosterman 11 months ago - 3 comments

#52 - Input file not recognized

Issue - State: open - Opened by JoukjeKloosterman 12 months ago - 5 comments

#51 - No content in the output image and Error reporting

Issue - State: open - Opened by xiaohuli-45 about 1 year ago - 1 comment

#50 - Errors supporting bedgraph files

Issue - State: closed - Opened by Ge0rges about 1 year ago - 4 comments

#49 - KeyError: 'chr'

Issue - State: closed - Opened by TaniaChP79 about 1 year ago - 3 comments

#48 - sbatch example of methplotlib

Issue - State: closed - Opened by TaniaChP79 about 1 year ago - 2 comments

#47 - problem with

Issue - State: closed - Opened by sbecuwe over 1 year ago - 1 comment

#46 - sklearn deprecated

Issue - State: closed - Opened by sbecuwe over 1 year ago - 1 comment

#45 - AttributeError: module 'plotly' has no attribute 'subplots'

Issue - State: closed - Opened by clock-matt over 1 year ago - 1 comment

#44 - mehplotlib having trouble finding sklearn

Issue - State: closed - Opened by clock-matt over 1 year ago - 3 comments

#43 - Remora .bam as a input

Issue - State: open - Opened by Fatihlrcfs about 2 years ago - 7 comments

#42 - Window parameter cannot deal with complicated fasta headers

Issue - State: closed - Opened by bastian-wur about 2 years ago - 4 comments

#41 - Pandas.error and shape mismatch

Issue - State: open - Opened by partha434 about 2 years ago - 19 comments

#40 - bgzip, tabix and sorting

Issue - State: open - Opened by carolinehey over 2 years ago - 5 comments

#39 - cannot import name 'get_all_ties'

Issue - State: closed - Opened by carolinehey over 2 years ago

#38 - Python import issue

Issue - State: closed - Opened by Eric-CH-Chen over 2 years ago - 5 comments

#37 - Can bam files from guppy version v.6.1.1 be used?

Issue - State: closed - Opened by carolinehey over 2 years ago

#36 - different version different error

Issue - State: closed - Opened by Fatihlrcfs over 2 years ago - 19 comments

#35 - What kind of Nanocompore outputs should be used?

Issue - State: open - Opened by apbiomol over 3 years ago - 4 comments

#34 - Bug?

Issue - State: closed - Opened by tnn111 over 3 years ago - 1 comment

#33 - No calls in window

Issue - State: closed - Opened by JesseBNL over 3 years ago - 7 comments

#32 - gtf fails

Issue - State: closed - Opened by JWDebler over 3 years ago - 9 comments

#31 - Using Megalodon files as input

Issue - State: open - Opened by dipannita-g over 3 years ago - 36 comments

#30 - Unable to install using pip

Issue - State: closed - Opened by dipannita-g over 3 years ago - 7 comments

#29 - all context methylation visualization

Issue - State: open - Opened by PaulaRomeroLozano over 3 years ago - 21 comments

#28 - Color modification frequency

Issue - State: closed - Opened by JesseBNL over 3 years ago - 1 comment

#27 - Adding option to make binary plots without log likelihood nuances

Pull Request - State: closed - Opened by wdecoster almost 4 years ago

#26 - Adding Bedgraph support

Pull Request - State: closed - Opened by wdecoster about 4 years ago

#25 - adding an option to enable static images using kaleido

Pull Request - State: closed - Opened by wdecoster about 4 years ago

#24 - Adding option to read nanopolish data from a tabix stream

Pull Request - State: closed - Opened by wdecoster about 4 years ago

#23 - calls file not recognised

Issue - State: closed - Opened by Coracollar over 4 years ago - 11 comments

#22 - KeyError: "tag 'MM' not present"

Issue - State: closed - Opened by joanmarticarreras over 4 years ago - 9 comments

#20 - problems in methplotlib 0.13.0

Issue - State: closed - Opened by Coracollar over 4 years ago - 6 comments

#19 - Adding support for gff files

Pull Request - State: closed - Opened by wdecoster almost 5 years ago

#18 - Phred to probabilities

Pull Request - State: closed - Opened by wdecoster almost 5 years ago

#17 - Adding ontcram

Pull Request - State: closed - Opened by wdecoster almost 5 years ago

#16 - Support nanocompore

Pull Request - State: closed - Opened by wdecoster almost 5 years ago

#15 - Found 0 gene(s) in the region.

Issue - State: closed - Opened by sarah872 almost 5 years ago - 9 comments

#14 - Small fixes

Pull Request - State: closed - Opened by wdecoster almost 5 years ago - 5 comments

#13 - Allow prefix in config file

Pull Request - State: open - Opened by endrebak almost 5 years ago - 4 comments

#12 - Allow arbitrary paths with -o/--outfile

Pull Request - State: closed - Opened by endrebak almost 5 years ago - 10 comments

#11 - Enabling output from methylation aware guppy

Issue - State: closed - Opened by wdecoster almost 5 years ago

#10 - Enabling output from nanocompore

Issue - State: closed - Opened by wdecoster almost 5 years ago - 1 comment

#9 - Three fixes:

Pull Request - State: closed - Opened by endrebak almost 5 years ago - 9 comments

#8 - What remains for methplotlib to be published?

Issue - State: closed - Opened by endrebak almost 5 years ago - 4 comments

#6 - Add testing with py.test?

Issue - State: closed - Opened by endrebak almost 5 years ago - 1 comment

#5 - Update differential modification

Pull Request - State: closed - Opened by endrebak almost 5 years ago - 24 comments

#4 - can it deal with data from tombo？

Issue - State: closed - Opened by pllizhonghong about 5 years ago - 1 comment

#3 - Various changes in plotting

Pull Request - State: closed - Opened by wdecoster over 5 years ago

#2 - Adding snakefile

Pull Request - State: closed - Opened by wdecoster over 5 years ago

#1 - Change header in read_meth_freq() function

Issue - State: closed - Opened by drkennetz almost 6 years ago - 1 comment