Ecosyste.ms: Issues

An open API service for providing issue and pull request metadata for open source projects.

GitHub / wdecoster/NanoPlot issues and pull requests

#372 - different NanoStats.txt file

Issue - State: open - Opened by ScarlettPegany 10 days ago

#369 - NanoPlot 1.42.0 has crashed

Issue - State: closed - Opened by mithunbge06 23 days ago - 2 comments

#368 - Not printing readID when run on fastq files

Issue - State: closed - Opened by pclavell about 1 month ago - 4 comments

#367 - Request for detailed explanations of numeric values in NanoPlot report

Issue - State: closed - Opened by KushanManahara about 2 months ago - 2 comments

#366 - Adding Q30 and Q50 to summary statistics of NanoPlot report

Issue - State: closed - Opened by Fedeluppi about 2 months ago - 4 comments

#365 - setup.py problem

Issue - State: closed - Opened by lihaicheng7003 about 2 months ago - 3 comments

#364 - Confusion regarding arrow formatted files

Issue - State: closed - Opened by TBradley27 about 2 months ago - 6 comments

#363 - Running NanoPlot on aligned bam file demuxed by Dorado?

Issue - State: closed - Opened by tchrisboles about 2 months ago - 2 comments

#362 - Unexpected keyword argument

Issue - State: closed - Opened by axelphilip 3 months ago - 11 comments

#361 - Wrong value for the mean read quality

Issue - State: closed - Opened by DenisFilloux 3 months ago - 1 comment

#360 - Resulting Image（png） Generation Issues

Issue - State: open - Opened by RADIOMUMM 3 months ago - 12 comments

#359 - concatenate the different NanoStats.txt files

Issue - State: closed - Opened by SueFletcher 3 months ago - 1 comment

#358 - minimum read length

Issue - State: closed - Opened by lucyintheskyzzz 4 months ago - 2 comments

#356 - Using barcoded BAM files with no summary

Issue - State: closed - Opened by Ge0rges 4 months ago - 6 comments

#355 - Quality Scores

Issue - State: closed - Opened by BerrocalRubio333 4 months ago - 3 comments

#354 - Web Service not loading in CA

Issue - State: closed - Opened by jennifergribble-nanopore 5 months ago - 7 comments

#353 - Nanoplot Errno32 Broken pipe

Issue - State: closed - Opened by teodorabu 5 months ago - 2 comments

#352 - runs very slowly without "--only-report" option

Issue - State: open - Opened by chucknordy 6 months ago - 7 comments
Labels: enhancement

#351 - Negative values in Weighted Histograms

Issue - State: closed - Opened by LiaOb21 6 months ago - 4 comments

#350 - Weigted Histogram

Issue - State: open - Opened by AsmaaSamyMohamedMahmoud 6 months ago - 4 comments

#349 - issue/warning?

Issue - State: closed - Opened by gunjanpandey 7 months ago - 1 comment

#348 - pandas.value_counts is deprecated

Issue - State: closed - Opened by jodjo86 8 months ago - 1 comment

#346 - --only-report option added

Pull Request - State: closed - Opened by juanjo255 8 months ago - 6 comments

#345 - Return only the report

Issue - State: closed - Opened by juanjo255 8 months ago - 3 comments

#344 - Error in running nanoplot .Doesnot produce combined result file.

Issue - State: closed - Opened by ap1438 9 months ago - 1 comment

#343 - NanoPlot 1.41.6 has crashed

Issue - State: closed - Opened by SelfShubham 9 months ago - 1 comment

#342 - Difference in read quality output from bam and summary file

Issue - State: closed - Opened by teodorabu 9 months ago - 2 comments

#341 - Number of reads from NanoPlot doesn't match samtools

Issue - State: closed - Opened by KunFang93 9 months ago - 9 comments

#340 - ValueError: Invalid character in quality string

Issue - State: closed - Opened by Sreelekshmi-291 10 months ago - 1 comment

#339 - Nanoplot iterations produce different outputs

Issue - State: closed - Opened by ASTR44 10 months ago - 2 comments

#338 - Thank you for your newest github release

Issue - State: closed - Opened by erinyoung 10 months ago - 1 comment

#337 - Import Error

Issue - State: closed - Opened by tahir58 10 months ago - 4 comments

#336 - Problem ran NanoPlot

Issue - State: closed - Opened by gosalone 10 months ago - 7 comments

#335 - Not all dots seem to be plotted

Issue - State: closed - Opened by ryotag about 1 year ago - 6 comments

#334 - Nanoplot quality thresholds are poorly tuned for current datasets

Issue - State: closed - Opened by nhartwic about 1 year ago - 3 comments

#333 - module 'matplotlib.cm' has no attribute 'cmap_d'

Issue - State: closed - Opened by Ghahfarokhi about 1 year ago - 4 comments

#332 - Update license; missed in 80caf99a88d80dc61a30e975a1aa4375a93a7be0

Pull Request - State: closed - Opened by cbrueffer about 1 year ago - 1 comment

#331 - NanoPlot 1.41.0 has crashed :-(

Issue - State: closed - Opened by Ajuju0804 about 1 year ago - 4 comments

#330 - mean quality is different between 1.40.2 and 1.41.0

Issue - State: closed - Opened by lovelynewGao about 1 year ago - 1 comment

#329 - Timezone-aware issue when processing fastq rich data

Issue - State: closed - Opened by matinnuhamunada about 1 year ago

#328 - NanoPlot 1.41.0 AttributeError: 'list' object has no attribute 'lower'

Issue - State: closed - Opened by ljz3216 about 1 year ago - 4 comments

#326 - Online tool not working

Issue - State: closed - Opened by shamilton-jones about 1 year ago - 2 comments

#325 - multiple plots

Issue - State: closed - Opened by omarkr8 about 1 year ago - 1 comment

#324 - raw plot data

Issue - State: closed - Opened by ezcn about 1 year ago - 1 comment

#323 - OSError: not a gzip file

Issue - State: closed - Opened by tann5er about 1 year ago - 1 comment

#322 - Can't install Nanoplot

Issue - State: closed - Opened by BairdMc over 1 year ago - 1 comment

#321 - Issue with dependency Plotly

Issue - State: closed - Opened by rzelle-lallemand over 1 year ago - 2 comments

#320 - Read quality 20 with low percentage of identity

Issue - State: closed - Opened by Liukvr over 1 year ago - 3 comments

#319 - Changelog

Issue - State: open - Opened by bernt-matthias over 1 year ago

#318 - Installation Error NanoPlot

Issue - State: closed - Opened by StanAanhane over 1 year ago - 6 comments

#317 - NanoPlot memory overflow with –barcoded option

Issue - State: closed - Opened by yoshinak1 over 1 year ago - 4 comments

#316 - TypeError: can only concatenate str (not "list") to str

Issue - State: closed - Opened by Fjhyolanda over 1 year ago - 1 comment

#315 - NanoPlot crashed - OSError: [Errno 24]

Issue - State: closed - Opened by AndiBagi over 1 year ago - 3 comments

#314 - Nanostat v Nanoplot

Issue - State: closed - Opened by awgymer over 1 year ago - 2 comments

#313 - Transform failed with error code 1: Failed to serialize document: Uncaught

Issue - State: closed - Opened by genkiguan over 1 year ago - 2 comments

#312 - About default min read quality setup

Issue - State: closed - Opened by wuying1984 over 1 year ago - 2 comments

#311 - Label of the y-axis of the weighted histograms

Issue - State: closed - Opened by mar-mueller almost 2 years ago - 1 comment

#310 - Tooltip showing log length instead of length

Issue - State: closed - Opened by mbhall88 almost 2 years ago - 1 comment

#309 - Adaptive sampling info

Issue - State: closed - Opened by nsgarcia27 almost 2 years ago - 3 comments

#308 - nanopore reads quality is too low

Issue - State: closed - Opened by cfc424 almost 2 years ago

#307 - Use nanoget 1.17.0

Pull Request - State: closed - Opened by SHuang-Broad almost 2 years ago

#306 - when to use --huge?

Issue - State: closed - Opened by SHuang-Broad almost 2 years ago - 15 comments

#305 - Feature Request: Additional Quality Cutoffs

Issue - State: closed - Opened by atrull314 almost 2 years ago - 1 comment

#304 - kaleido and internet access

Issue - State: open - Opened by fergsc almost 2 years ago - 2 comments

#303 - Command errored out

Issue - State: closed - Opened by AfUttamane almost 2 years ago - 2 comments

#302 - PermissionError: [Errno 13] Permission denied

Issue - State: open - Opened by nbargues almost 2 years ago

#301 - NanoPlot: error: arguments required + command not found

Issue - State: closed - Opened by ccerpas almost 2 years ago - 7 comments

#300 - Running on rebasecalled reads including methylation information

Issue - State: closed - Opened by smf96 almost 2 years ago - 3 comments

#299 - An error with nanoplot

Issue - State: closed - Opened by mahsataghipour about 2 years ago - 4 comments

#298 - Is there a way just to extract raw data - pickle and tsv format?

Issue - State: closed - Opened by bhargava-morampalli about 2 years ago - 2 comments

#297 - Feature Request : tab or comma delimited

Issue - State: closed - Opened by erinyoung about 2 years ago - 2 comments

#295 - NanoPlot web service input size requirement is a bit small

Issue - State: closed - Opened by ZarulHanifah about 2 years ago - 3 comments

#294 - Conda installation

Issue - State: closed - Opened by mike-molnar about 2 years ago - 4 comments

#293 - PolyCollection' object has no property 'stat_func' error

Issue - State: closed - Opened by Juliana-Soto24 about 2 years ago - 1 comment

#292 - Support for multi-format output figures

Issue - State: closed - Opened by AyanoClarke about 2 years ago - 2 comments

#291 - TypeError: get_input() got an unexpected keyword argument 'keep_supp'

Issue - State: closed - Opened by os103 about 2 years ago - 3 comments

#290 - problem after conda installation

Issue - State: closed - Opened by matt-shenton over 2 years ago - 2 comments

#289 - `distplot` function not working

Issue - State: closed - Opened by uyenhoang1511 over 2 years ago - 1 comment

#288 - Nanoplot histgrams has minus bars

Issue - State: closed - Opened by khoriba over 2 years ago - 5 comments

#286 - analysis pass only

Issue - State: closed - Opened by aspitaleri over 2 years ago - 1 comment

#285 - Suggestions for speeding up Nanoplot

Issue - State: open - Opened by SHuang-Broad over 2 years ago - 3 comments

#284 - platform_shared_memory_region_posix.cc error

Issue - State: closed - Opened by trum994 over 2 years ago - 3 comments

#283 - NanoPlot 1.39 crashes halfway - ValueError raised from plotly

Issue - State: closed - Opened by landmanf over 2 years ago - 6 comments

#282 - NanoPlot never finishes

Issue - State: closed - Opened by sulheim over 2 years ago - 6 comments

#281 - No static plots are saved due to some kaleido problem

Issue - State: open - Opened by raysteven over 2 years ago - 6 comments

#280 - NanoPlot crashes

Issue - State: closed - Opened by NiklasDreyer over 2 years ago - 2 comments

#279 - Some of the plots generated seems a bit weird...

Issue - State: closed - Opened by adhamzul over 2 years ago - 4 comments

#278 - nanoplot crashes when trying to plot from summary file..

Issue - State: closed - Opened by senidr over 2 years ago - 1 comment

#277 - NanoPlot 1.38.1 has crashed

Issue - State: closed - Opened by lisiang over 2 years ago - 1 comment

#276 - AttributeError: 'bool' object has no attribute 'count'

Issue - State: closed - Opened by wdecoster over 2 years ago

#275 - nanoplot Crush

Issue - State: closed - Opened by Fatihlrcfs over 2 years ago - 10 comments

#273 - Legacy KDE plots: contours not color filled

Issue - State: closed - Opened by thallinger over 2 years ago - 2 comments