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GitHub / waldronlab/GSEABenchmarkeR issues and pull requests

#15 - Error in UseMethod("filter_") When run 'loadEData("tcga", nr.datasets=3)'

Issue - State: closed - Opened by SickleLeeks over 1 year ago - 2 comments

#14 - Is there a way to use built-in FDR control for GSEA and other methods?

Issue - State: closed - Opened by annikagable almost 5 years ago - 3 comments
Labels: question

#13 - evalTypeIError example

Issue - State: closed - Opened by annikagable almost 5 years ago - 6 comments
Labels: bug

#12 - Missing dataset ID in output files when runEA on a single SE

Issue - State: closed - Opened by lgeistlinger almost 5 years ago - 2 comments
Labels: bug

#11 - Naming user-defined functions in console/file output

Issue - State: closed - Opened by lgeistlinger almost 5 years ago - 3 comments
Labels: enhancement

#10 - vignette: add documentation / example for parallel computation

Issue - State: open - Opened by lgeistlinger almost 5 years ago
Labels: enhancement

#9 - Passing on additional arguments to user-defined methods

Issue - State: closed - Opened by lgeistlinger almost 5 years ago - 10 comments
Labels: enhancement

#8 - loadEData('geo2kegg') loads list of ExpressionSets

Issue - State: closed - Opened by annikagable almost 5 years ago - 1 comment
Labels: enhancement

#7 - Functional enrichment of differentially methylated regions (DMRs)

Issue - State: closed - Opened by moldach about 6 years ago - 1 comment
Labels: question

#6 - Including other enrichment analysis methods

Issue - State: closed - Opened by moldach about 6 years ago - 2 comments
Labels: question

#5 - Error from runDE under Windows

Issue - State: open - Opened by moldach about 6 years ago - 3 comments

#4 - upgrade to R dependency to version >=3.5.0 prior to submission to Bioconductor

Issue - State: closed - Opened by schifferl almost 7 years ago - 1 comment

#3 - consider moving data files to the data directory

Issue - State: closed - Opened by schifferl almost 7 years ago - 3 comments

#2 - consider the inclusion of unit tests using the `testthat` framework

Issue - State: closed - Opened by schifferl almost 7 years ago - 4 comments

#1 - make repository public to enable continuous integration servers

Issue - State: closed - Opened by schifferl almost 7 years ago - 1 comment