wadpac/GGIR issues and pull requests

#1108 - Speedup create_test_acc_csv (as only used for unit tests)

Pull Request - State: closed - Opened by vincentvanhees 6 months ago - 1 comment

#1107 - revert HDCZA algorithm change in 3.0-7

Pull Request - State: closed - Opened by vincentvanhees 6 months ago - 1 comment

#1106 - Fix bug in handling time gaps, introduced in release 3.0-6

Pull Request - State: closed - Opened by vincentvanhees 6 months ago - 1 comment

#1105 - Fragmentation metric CoV not correct

Issue - State: closed - Opened by vincentvanhees 6 months ago
Labels: 24-hour-time-use (GGIRpart5)

#1104 - Time gap imputation triggers error following changes in 3.0-6

Issue - State: closed - Opened by vincentvanhees 6 months ago
Labels: raw-data-handling (GGIRpart1)

#1103 - Change default for minloadcrit + store GGIR version in output + improve documentation for TimeSegments2ZeroFile + change back recent HDCZA update

Pull Request - State: closed - Opened by vincentvanhees 6 months ago - 1 comment

#1102 - Revert simplification of HDCZA

Issue - State: closed - Opened by vincentvanhees 6 months ago
Labels: sleep (GGIRpart3+4)

#1101 - Change default for parameter minloadcrit

Issue - State: closed - Opened by vincentvanhees 6 months ago
Labels: raw-data-handling (GGIRpart1)

#1100 - Option to impute missing sleeplog entries for sleep onset and wakeup time

Pull Request - State: closed - Opened by vincentvanhees 6 months ago - 1 comment

#1099 - Issue1098 handling missing sf gt3x

Pull Request - State: closed - Opened by vincentvanhees 6 months ago

#1098 - Skip call to g.dotorcomma with sampling frequency can not be extracted

Issue - State: closed - Opened by vincentvanhees 6 months ago
Labels: raw-data-handling (GGIRpart1)

#1097 - Minor edits to draft githubIO chapter 3 on quality assurance

Pull Request - State: closed - Opened by vincentvanhees 6 months ago

#1096 - Define defaultGuider in each scenario

Pull Request - State: closed - Opened by vincentvanhees 6 months ago

#1095 - New object defaultGuider not defined for all possible scenarios in part 4

Issue - State: closed - Opened by vincentvanhees 6 months ago - 1 comment
Labels: sleep (GGIRpart3+4)

#1094 - Issues 1090 1093 activity log

Pull Request - State: closed - Opened by jhmigueles 6 months ago - 1 comment

#1093 - Make qwindow2timestamp consider epoch size

Issue - State: closed - Opened by jhmigueles 6 months ago

#1092 - Store GGIR version per part per recording inside the reports

Issue - State: closed - Opened by vincentvanhees 7 months ago
Labels: enhancement

#1091 - New standard csv file to be processed for GGIR

Issue - State: closed - Opened by pinweichen 7 months ago - 3 comments

#1090 - Minor bug in g.conv.actlog when reading dates

Issue - State: closed - Opened by jhmigueles 7 months ago - 3 comments

#1089 - HASIB.algo="NotWorn" algorithm is not very intuitive

Issue - State: closed - Opened by vincentvanhees 7 months ago
Labels: sleep (GGIRpart3+4)

#1088 - Add option to impute missing sleeplog entries

Issue - State: closed - Opened by vincentvanhees 7 months ago - 1 comment
Labels: sleep (GGIRpart3+4)

#1087 - Add temperature to part 5 time series + Fix bug related to merging part 4 with part 5 results + Simplify installation

Pull Request - State: closed - Opened by vincentvanhees 7 months ago

#1086 - Incorrect merge of night level sleep aggregates into part 5 results

Issue - State: closed - Opened by vincentvanhees 7 months ago
Labels: 24-hour-time-use (GGIRpart5)

#1085 - Add temperature to time series output

Issue - State: closed - Opened by vincentvanhees 7 months ago
Labels: 24-hour-time-use (GGIRpart5)

#1084 - Allow for sleeplog with only 1 row

Pull Request - State: closed - Opened by vincentvanhees 7 months ago

#1083 - sleeplog with one record collapses to vector

Issue - State: closed - Opened by vincentvanhees 7 months ago
Labels: sleep (GGIRpart3+4)

#1082 - calendar_date in part 5 when window starts exactly at 23:59:55

Issue - State: closed - Opened by vincentvanhees 7 months ago - 1 comment
Labels: 24-hour-time-use (GGIRpart5)

#1081 - Revise nonwear detection for externally derived epoch data

Pull Request - State: closed - Opened by vincentvanhees 7 months ago

#1080 - Rolling zero calculation for external epoch possibly incorrect

Issue - State: closed - Opened by vincentvanhees 7 months ago
Labels: raw-data-handling (GGIRpart1)

#1079 - Issue1078 definedays ww

Pull Request - State: closed - Opened by vincentvanhees 7 months ago

#1078 - recent change in release 3.0-7 to g.part5.defineddays does not work for WW when recording has zero useful windows

Issue - State: closed - Opened by vincentvanhees 7 months ago
Labels: 24-hour-time-use (GGIRpart5)

#1077 - Suggestions for pr 1073

Pull Request - State: closed - Opened by l-k- 7 months ago

#1076 - remove character that devtools::load_all() can't parse

Pull Request - State: closed - Opened by l-k- 7 months ago

#1075 - The "degree" character in comment text not parsed correctly by devtools::load_all()

Issue - State: closed - Opened by l-k- 7 months ago - 1 comment

#1074 - Lux Output

Issue - State: closed - Opened by michelle-kubicki 7 months ago - 1 comment

#1073 - Minor edits to read.my.acc to handle missing or zero rmc.sf in all scenarios

Pull Request - State: closed - Opened by vincentvanhees 7 months ago

#1072 - read.myacc.csv and missing or zero rmc.sf value

Issue - State: closed - Opened by vincentvanhees 7 months ago
Labels: raw-data-handling (GGIRpart1)

#1071 - Add fragmentation metrics to PR1028

Pull Request - State: closed - Opened by vincentvanhees 7 months ago

#1070 - Issue 1010 in g.convert.part2.long(), don't evaluate columns that aren't there

Pull Request - State: closed - Opened by l-k- 7 months ago

#1069 - TimeSegments2ZeroFile parameter

Issue - State: closed - Opened by jhmigueles 7 months ago - 8 comments
Labels: descriptive-analyses (GGIRpart2)

#1068 - small fixes

Pull Request - State: closed - Opened by vincentvanhees 7 months ago

#1067 - Issue1043 SPT and ignore nonwear

Pull Request - State: closed - Opened by jhmigueles 7 months ago - 1 comment

#1066 - Force applyExtFunction to only use x, y and z columns

Pull Request - State: closed - Opened by vincentvanhees 7 months ago - 1 comment

#1065 - applyExtFunction expects x, y and z

Issue - State: closed - Opened by vincentvanhees 7 months ago
Labels: raw-data-handling (GGIRpart1)

#1064 - in g.report.part2 f0 does not get rescaled to length(fnames) if too large

Issue - State: closed - Opened by vincentvanhees 8 months ago
Labels: descriptive-analyses (GGIRpart2)

#1063 - Simplify HDCZA

Pull Request - State: closed - Opened by vincentvanhees 8 months ago - 1 comment

#1062 - Simplify HDCZA algorithm

Issue - State: closed - Opened by vincentvanhees 8 months ago
Labels: sleep (GGIRpart3+4)

#1061 - Guidance on installing older version of GGIR

Issue - State: closed - Opened by vincentvanhees 8 months ago
Labels: documentation

#1060 - Code still tries to pass on deprecated function g.downsample

Issue - State: closed - Opened by vincentvanhees 8 months ago
Labels: raw-data-handling (GGIRpart1)

#1059 - minor cleanup of tests that were added in #1057

Pull Request - State: closed - Opened by l-k- 8 months ago

#1058 - Issue1039 full qqq error edits jairo

Pull Request - State: closed - Opened by jhmigueles 8 months ago - 2 comments

#1057 - fix handling of ad hoc csv file header

Pull Request - State: closed - Opened by l-k- 8 months ago

#1056 - g.inspectfile can't extract sampling rate from header returned by read.myacc.csv()

Issue - State: closed - Opened by l-k- 8 months ago

#1055 - Enhance pull request template to guide contributions and to ease PR reviews

Issue - State: closed - Opened by vincentvanhees 8 months ago

#1054 - Minor issue fixes: handling multiple dots in filenames and clarify documentation for read.myacc.csv

Pull Request - State: closed - Opened by vincentvanhees 8 months ago

#1053 - Handle multiple dots in filename

Issue - State: closed - Opened by vincentvanhees 8 months ago

#1052 - Modify functionality for parameter includedaycrit.part5

Pull Request - State: closed - Opened by vincentvanhees 8 months ago

#1051 - Edits to PR1033

Pull Request - State: closed - Opened by vincentvanhees 8 months ago

#1050 - Modify behaviour parameter includedaycrit.part5

Issue - State: closed - Opened by vincentvanhees 8 months ago
Labels: 24-hour-time-use (GGIRpart5)

#1049 - Make GGIR run easier on machines not configured for UK/US

Pull Request - State: closed - Opened by vincentvanhees 8 months ago - 1 comment

#1048 - sep_report and sep_config not sufficient for working with non-UK/US configured machines?

Issue - State: closed - Opened by vincentvanhees 8 months ago

#1047 - Part 2 report stores some day names in local languages

Issue - State: closed - Opened by vincentvanhees 8 months ago
Labels: descriptive-analyses (GGIRpart2)

#1046 - Restructure GGIR vignettes

Issue - State: open - Opened by vincentvanhees 8 months ago
Labels: documentation

#1045 - Fix issue with handling of missing nights at the start of the recording in part 5 MM analysis

Pull Request - State: closed - Opened by vincentvanhees 8 months ago

#1044 - Revise IV and IS calculation + integrate in both part2 and part6

Pull Request - State: closed - Opened by vincentvanhees 8 months ago

#1043 - Add option to use nonwear to aid the definition of SPT when nonwear is high in parts 3 and 4

Issue - State: closed - Opened by jhmigueles 8 months ago - 4 comments
Labels: sleep (GGIRpart3+4)

#1042 - Add check that windowsizes[3] should be multitude of windowsizes[2]

Issue - State: closed - Opened by vincentvanhees 8 months ago - 2 comments
Labels: raw-data-handling (GGIRpart1)

#1041 - if daysummary is a vector, convert to 1-row matrix

Pull Request - State: closed - Opened by l-k- 8 months ago

#1040 - in g.analyse.perfile(), daysummary could be a vector, causing "incorrect number of dimensions" error

Issue - State: closed - Opened by l-k- 8 months ago

#1039 - g.part5.definedays warning: "number of items to replace is not a multiple of replacement length"

Issue - State: closed - Opened by l-k- 8 months ago - 1 comment
Labels: 24-hour-time-use (GGIRpart5)

#1038 - Minor revisions to PR1027

Pull Request - State: closed - Opened by vincentvanhees 8 months ago

#1037 - Revisision to PR1027

Pull Request - State: closed - Opened by vincentvanhees 8 months ago

#1036 - Improve documentation on ActiGraph csv files

Issue - State: open - Opened by vincentvanhees 8 months ago
Labels: documentation, raw-data-handling (GGIRpart1)

#1035 - Redundant distinction between rmc.unit.time option POSIX and character

Issue - State: open - Opened by vincentvanhees 8 months ago
Labels: raw-data-handling (GGIRpart1)

#1034 - Argument rmc.firstrow.acc needed to trigger read.myacc.csv functionality for reading ad-hoc csv files.

Issue - State: closed - Opened by vincentvanhees 8 months ago
Labels: raw-data-handling (GGIRpart1)

#1033 - Issue1032 bug duplicates calibration

Pull Request - State: closed - Opened by jhmigueles 8 months ago - 1 comment

#1032 - Minor bug in g.calibrate when looking for duplicates

Issue - State: closed - Opened by jhmigueles 8 months ago
Labels: raw-data-handling (GGIRpart1)

#1031 - Fixes three smaller issues 1026 1029 1030

Pull Request - State: closed - Opened by vincentvanhees 8 months ago - 1 comment

#1030 - latest changes break Sensewear in combination with HASPT.algo = NotWorn functionality

Issue - State: closed - Opened by vincentvanhees 8 months ago
Labels: sleep (GGIRpart3+4), 24-hour-time-use (GGIRpart5)

#1029 - g.part5.definedays selects index beyond end of recording

Issue - State: closed - Opened by vincentvanhees 8 months ago
Labels: 24-hour-time-use (GGIRpart5)

#1028 - Add to part 6: DFA + fragmentation metrics + IV and IS (including major updates to IV and IS)

Pull Request - State: closed - Opened by vincentvanhees 8 months ago - 4 comments

#1027 - Part 1 improving code readability

Pull Request - State: closed - Opened by l-k- 8 months ago - 20 comments

#1026 - Count-based nonwear detection: making running zeros window length modifiable

Issue - State: closed - Opened by vincentvanhees 8 months ago
Labels: raw-data-handling (GGIRpart1)

#1025 - Tidy up longitudinal axis detection and re-use when sensor is worn on the hip

Pull Request - State: closed - Opened by vincentvanhees 8 months ago

#1024 - Re-use estimated longitudinal axis for hip data by part2 in part3

Issue - State: closed - Opened by vincentvanhees 8 months ago - 1 comment
Labels: sleep (GGIRpart3+4)

#1023 - add default value for variable extranoons

Pull Request - State: closed - Opened by l-k- 8 months ago

#1022 - variable extranoons in plot_acc() needs a default

Issue - State: closed - Opened by l-k- 8 months ago

#1021 - documentation parameter chunksize

Issue - State: closed - Opened by vincentvanhees 8 months ago
Labels: raw-data-handling (GGIRpart1)

#1020 - update GGIR.Rd docs for mode with part 6

Issue - State: closed - Opened by vincentvanhees 8 months ago

#1019 - Argument relyonguider_SleepEfficiency?

Issue - State: closed - Opened by vincentvanhees 8 months ago

#1018 - includedaycrit.part5

Issue - State: closed - Opened by vincentvanhees 8 months ago

#1017 - Fixing various smaller issues

Pull Request - State: closed - Opened by vincentvanhees 9 months ago

#1016 - Visualreport cannot handlerecordings with zero valid days + visualreport_without_invalid = TRUE

Issue - State: closed - Opened by vincentvanhees 9 months ago
Labels: visualisations

#1015 - Add new cut-point by Bammann 2021 to cut-points vignette

Issue - State: closed - Opened by vincentvanhees 9 months ago
Labels: documentation

#1014 - Correct numeric LX time to be on a scale between 12 and 36 instead of 0-24

Pull Request - State: closed - Opened by vincentvanhees 9 months ago

#1013 - Add functionality for reading sensewear xlsx files as externally derived epoch data

Pull Request - State: closed - Opened by vincentvanhees 9 months ago - 1 comment

#1012 - LX numeric time not computational friendly

Issue - State: closed - Opened by vincentvanhees 9 months ago
Labels: 24-hour-time-use (GGIRpart5), descriptive-analyses (GGIRpart2)

#1011 - Enhance "NotWorn" option for the HASPT.algo argument

Issue - State: closed - Opened by vincentvanhees 9 months ago
Labels: sleep (GGIRpart3+4)

#1010 - Data frame error in Report Part 2

Issue - State: closed - Opened by Asanto32 9 months ago - 4 comments

#1009 - Documentation on handling epoch sizes of externally derived epoch data

Issue - State: closed - Opened by vincentvanhees 9 months ago
Labels: documentation

GitHub / wadpac/GGIR issues and pull requests