vsoch/scif issues and pull requests

#74 - Interactivity truncated?

Issue - State: open - Opened by pgierz 4 months ago - 5 comments

#73 - Reworked app.run exit code

Pull Request - State: closed - Opened by dmachi 10 months ago - 2 comments

#72 - add workflow to release to pypi

Pull Request - State: closed - Opened by vsoch 10 months ago

#71 - Revert "exit with the exit code from a app when run()"

Pull Request - State: closed - Opened by vsoch 10 months ago

#70 - SCIF v0.8.2 does not substitute [e]ENV_VAR correctly

Issue - State: open - Opened by dtrudg 10 months ago - 8 comments

#69 - updating linting

Pull Request - State: closed - Opened by vsoch 10 months ago

#68 - exit with the exit code from a app when run()

Pull Request - State: closed - Opened by dmachi 10 months ago - 5 comments

#67 - Exit Code from scif run

Issue - State: open - Opened by dmachi 10 months ago - 12 comments

#66 - install script should exit on nonzero return code

Pull Request - State: closed - Opened by vsoch almost 5 years ago - 1 comment

#65 - scif install should return error exit code on error during appinstall

Issue - State: open - Opened by bilke almost 5 years ago - 6 comments

#64 - Only support Python 3.6 and up

Pull Request - State: closed - Opened by vsoch almost 5 years ago - 1 comment

#63 - inadvertent Python 3.6 dependency?

Issue - State: closed - Opened by samcmill almost 5 years ago - 13 comments

#62 - Adding fixes samcmill, black formatting

Pull Request - State: closed - Opened by vsoch almost 5 years ago

#61 - fix shell behavior

Pull Request - State: closed - Opened by samcmill almost 5 years ago - 1 comment

#60 - Testing stream and capture of output

Pull Request - State: closed - Opened by vsoch about 5 years ago - 10 comments

#59 - Investigate stream and captured output

Issue - State: closed - Opened by dkp about 5 years ago - 8 comments

#58 - Test adding quay.io

Pull Request - State: closed - Opened by vsoch about 5 years ago

#57 - testing deploy from circle

Pull Request - State: closed - Opened by vsoch over 5 years ago

#56 - circleci should release latest and tagged version

Issue - State: closed - Opened by vsoch over 5 years ago

#55 - Fix/client bugs

Pull Request - State: closed - Opened by vsoch over 5 years ago - 3 comments

#54 - runscript shouldn't be written if no apprun section

Issue - State: closed - Opened by vsoch over 5 years ago
Labels: bug

#53 - `scif run myapp -h` triggers the scif help

Issue - State: closed - Opened by bilke over 5 years ago - 6 comments

#52 - Fix to make test and runscript scripts executable on install

Pull Request - State: closed - Opened by vsoch about 6 years ago

#51 - singularity run --app support?

Issue - State: closed - Opened by bilke about 6 years ago - 6 comments

#50 - scif run working directory

Issue - State: closed - Opened by bilke about 6 years ago - 2 comments

#49 - CWL CommandLineTool

Issue - State: open - Opened by tetron about 6 years ago - 4 comments

#48 - Weird behavior in Singularity recipe

Issue - State: closed - Opened by saramonzon over 6 years ago - 7 comments

#47 - Nextflow-SCIF example : Possible solution

Issue - State: closed - Opened by saramonzon over 6 years ago - 7 comments

#46 - test function needs to check that app is valid first

Issue - State: open - Opened by vsoch over 6 years ago

#45 - TESTS needed across all functions

Issue - State: open - Opened by vsoch over 6 years ago

#44 - adding functions to expose test command

Pull Request - State: closed - Opened by vsoch over 6 years ago

#43 - [entrypoint] for test not provided

Issue - State: open - Opened by vsoch over 6 years ago

#42 - create conda recipe

Issue - State: open - Opened by vsoch almost 7 years ago

#41 - Fix/environment

Pull Request - State: closed - Opened by vsoch almost 7 years ago

#40 - $SCIF_* environment variables not available in %appinstall

Issue - State: closed - Opened by bilke almost 7 years ago - 6 comments

#39 - Fix/shell

Pull Request - State: closed - Opened by vsoch almost 7 years ago

#38 - remove (now old) docs from here

Issue - State: closed - Opened by vsoch almost 7 years ago - 1 comment

#37 - Appnames period parsing

Pull Request - State: closed - Opened by vsoch almost 7 years ago

#36 - update dates in licenses

Issue - State: closed - Opened by vsoch almost 7 years ago

#35 - Support app names containing period (".")

Issue - State: closed - Opened by Saford91 almost 7 years ago - 5 comments

#34 - Testing

Pull Request - State: closed - Opened by vsoch almost 7 years ago

#33 - introduced bug when installing files

Issue - State: closed - Opened by vsoch almost 7 years ago

#32 - Add environment to be sourced (inline with runscript)

Pull Request - State: closed - Opened by vsoch almost 7 years ago

#31 - test echo of variable to $SCIF_APPENV during install

Issue - State: closed - Opened by vsoch almost 7 years ago - 1 comment

#30 - Fix/parsing

Pull Request - State: closed - Opened by vsoch almost 7 years ago

#29 - scif exec parameter parsing fails?

Issue - State: closed - Opened by fbartusch almost 7 years ago - 18 comments

#28 - print of help needs to honor spacing

Issue - State: closed - Opened by vsoch almost 7 years ago - 1 comment

#27 - python2 exec invalid name

Issue - State: closed - Opened by vsoch almost 7 years ago

#26 - Fix parsing of additional arguments to run

Pull Request - State: closed - Opened by vsoch almost 7 years ago

#25 - Create entrypoint to activate environment

Issue - State: closed - Opened by vsoch almost 7 years ago - 1 comment

#24 - run needs to parse / pass on additional arguments

Issue - State: closed - Opened by vsoch almost 7 years ago

#23 - --quiet should be honored for run

Issue - State: closed - Opened by vsoch almost 7 years ago

#22 - appinstall needs to happen at SCIF_approot

Issue - State: closed - Opened by vsoch almost 7 years ago

#21 - debug copy command

Issue - State: closed - Opened by vsoch almost 7 years ago - 1 comment

#20 - need to add apptest section!

Issue - State: closed - Opened by vsoch almost 7 years ago - 1 comment

#19 - add pages on recipe (definitions)

Issue - State: closed - Opened by vsoch almost 7 years ago - 1 comment

#18 - change lowercase scif to SCIF

Issue - State: closed - Opened by vsoch almost 7 years ago

#17 - Just noticed a typo while following a link

Pull Request - State: closed - Opened by denis-yuen almost 7 years ago - 1 comment

#16 - editorial changes + adding self

Pull Request - State: closed - Opened by rdwrt almost 7 years ago - 1 comment

#15 - Suggestion: replace EV with ENV for environment variables

Issue - State: closed - Opened by rdwrt almost 7 years ago - 3 comments

#14 - parts of the menu navigation buttons like this arrow are broken, lead to 404

Issue - State: closed - Opened by rdwrt almost 7 years ago - 3 comments

#13 - references to existing literature needed?

Issue - State: closed - Opened by rdwrt almost 7 years ago - 2 comments

#12 - text change sci-f to scif

Pull Request - State: closed - Opened by rdwrt almost 7 years ago - 1 comment

#11 - SCI-F and SCIF are used side-by-side?

Pull Request - State: closed - Opened by rdwrt almost 7 years ago - 3 comments

#10 - Add validator to client

Issue - State: open - Opened by vsoch almost 7 years ago - 2 comments
Labels: help wanted, hacktoberfest

#9 - Add other integration examples

Issue - State: closed - Opened by vsoch almost 7 years ago - 8 comments
Labels: help wanted

#8 - Add forgotten end-of-code backticks

Pull Request - State: closed - Opened by AndiH almost 7 years ago - 3 comments

#7 - Add better background / introduction page

Issue - State: closed - Opened by vsoch almost 7 years ago - 3 comments

#6 - Added self to spec.md

Pull Request - State: closed - Opened by cMadan almost 7 years ago - 1 comment

#5 - Fixing table formatting in spec.md

Pull Request - State: closed - Opened by cMadan almost 7 years ago - 2 comments

#4 - Update spec.md

Pull Request - State: closed - Opened by satra almost 7 years ago - 1 comment

#3 - Dockerfiles and Singularity Recipe

Issue - State: closed - Opened by vsoch almost 7 years ago - 1 comment

#2 - [inspect] should show different metadata on demand

Issue - State: open - Opened by vsoch almost 7 years ago

#1 - [help] add more robust help entrypoint

Issue - State: open - Opened by vsoch almost 7 years ago

GitHub / vsoch/scif issues and pull requests