voxelmorph/voxelmorph issues and pull requests

#619 - Version compatibility problem?

Issue - State: open - Opened by pzaffino 9 days ago

#618 - Cannot run voxelmorph with synthmorph model

Issue - State: open - Opened by lchauvin 14 days ago - 3 comments

#617 - Replace `KerasTensor.get_shape` with `KerasTensor.shape`.

Pull Request - State: closed - Opened by mu40 14 days ago

#616 - Train SynthMorph for affine and joint registration.

Pull Request - State: closed - Opened by mu40 15 days ago

#615 - Refactor SynthMorph generator for recent TensorFlow.

Pull Request - State: closed - Opened by mu40 16 days ago

#614 - Update joint SynthMorph model.

Pull Request - State: closed - Opened by mu40 19 days ago

#613 - Update affine SynthMorph model.

Pull Request - State: closed - Opened by mu40 26 days ago

#611 - How to use the HyperVxmJoint network

Issue - State: closed - Opened by Pei-mao 2 months ago - 2 comments

#610 - Applying inverse DVF gives blurry results

Issue - State: open - Opened by burrusa 3 months ago

#609 - Update labels-to-image model name.

Pull Request - State: closed - Opened by mu40 3 months ago

#607 - Option to return neg_flow in PyTorch version

Issue - State: open - Opened by burrusa 3 months ago

#605 - ERROR with "read_pair_list(filename, delim=None, prefix=None, suffix=None)" reading file pairs

Issue - State: open - Opened by d6222g 3 months ago

#604 - Using lung segmentation during training

Issue - State: closed - Opened by paul-quique 3 months ago - 2 comments

#602 - Update SynthMorph reference.

Pull Request - State: closed - Opened by mu40 3 months ago

#601 - About SyN

Issue - State: open - Opened by domadaaaa 3 months ago

#600 - L smooth Loss not decreasing

Issue - State: open - Opened by A-shazli 5 months ago

#599 - Torch train.py problem

Issue - State: closed - Opened by TrikstarP 5 months ago - 2 comments

#598 - How to deform annotated landmarks with the predict dense deformation field in the pytorch version

Issue - State: open - Opened by keepgooooing 6 months ago

#597 - How to apply the affine matrix from SynthMorph

Issue - State: closed - Opened by Ireneyou33 6 months ago - 5 comments

#596 - Support h5 weight loading in PyTorch training script

Pull Request - State: open - Opened by MaybeRichard 6 months ago - 1 comment

#595 - How to specify input/output pairs in /images/list.txt for model training

Issue - State: open - Opened by adityaapte 6 months ago - 2 comments

#594 - huge loss

Issue - State: open - Opened by domadaaaa 7 months ago - 2 comments

#593 - The application of synthmorph to the problem of large deformation of lungs in ct-cbct

Issue - State: open - Opened by yuanpengpeng 7 months ago - 1 comment

#592 - Running configuration for other brain datasets with non-standard sizes

Issue - State: closed - Opened by rohitrango 7 months ago

#591 - Fix seeded randomization.

Pull Request - State: closed - Opened by mu40 7 months ago

#590 - Mouse Brain Registration (rsfmri - MRI - T2w)

Issue - State: open - Opened by arefks 7 months ago

#589 - VoxelMorph Atlas is just a slightly blurred version of the fixed image

Issue - State: open - Opened by wilcamsdington 8 months ago - 23 comments

#588 - More conveniently handle inputs to `vxm.utils.compose`.

Pull Request - State: closed - Opened by mu40 8 months ago

#587 - Resulting VoxelMorph Atlas is Blurry and Lacks Detail

Issue - State: open - Opened by siavashk 8 months ago - 6 comments

#586 - Registration on large FOV difference cases:

Issue - State: closed - Opened by aa1234241 8 months ago - 3 comments

#585 - Register cropped image to non-cropped image

Issue - State: open - Opened by annareithmeir 9 months ago - 1 comment

#584 - Any training tutorials?

Issue - State: open - Opened by Pascal-bucketbreaker 9 months ago - 4 comments

#583 - pytorch pre-train file

Issue - State: closed - Opened by wangnanv5 9 months ago - 8 comments

#582 - Train my own Voxelmorph model to align 3D images to mni152

Issue - State: open - Opened by Pei-mao 9 months ago

#581 - Need a tutorial for my own image

Issue - State: closed - Opened by Pascal-bucketbreaker 9 months ago - 6 comments

#579 - SynthMorph shapes demo - change of loss functions

Issue - State: closed - Opened by aungriah 10 months ago - 3 comments

#578 - Support deformable registration in an affine mid-space.

Pull Request - State: closed - Opened by mu40 10 months ago

#577 - affine transform from voxelmorph not compatible with ITK affine transform

Issue - State: open - Opened by jmanjon 10 months ago - 3 comments

#576 - Allow square matrices in most situations.

Pull Request - State: closed - Opened by mu40 10 months ago

#575 - Change the field shape when composing transforms.

Pull Request - State: closed - Opened by mu40 10 months ago

#574 - About the generation process of flow field/displacement field

Issue - State: open - Opened by DongChunL 10 months ago - 2 comments

#573 - ValueError

Issue - State: open - Opened by domadaaaa 10 months ago

#572 - Add affine SynthMorph demo.

Pull Request - State: closed - Opened by mu40 10 months ago

#571 - Implement HyperMorph in PyTorch, with sample training script

Pull Request - State: open - Opened by aviziskind 10 months ago

#570 - Add utils for plotting flow, and demo of new Baker et al. color scheme

Pull Request - State: open - Opened by aviziskind 10 months ago

#569 - Request to Update TensorFlow Import for Compatibility in train.py and test.py Scripts

Issue - State: open - Opened by VishalBalajiSivaraman 10 months ago - 5 comments

#568 - Change default loss weights for atlas building scripts

Pull Request - State: closed - Opened by neel-dey 11 months ago

#567 - Remove `indexing` argument deprecated 3 months ago.

Pull Request - State: closed - Opened by mu40 11 months ago

#566 - Fix output data type.

Pull Request - State: closed - Opened by mu40 11 months ago

#565 - Add SynthMorph model for symmetric joint registration.

Pull Request - State: closed - Opened by mu40 11 months ago

#564 - what kind of runtime environment do I need

Issue - State: open - Opened by zoumaxingjiulic 11 months ago

#563 - Strip module name.

Pull Request - State: closed - Opened by mu40 11 months ago

#562 - Add SynthMorph model for symmetric affine and rigid registration.

Pull Request - State: closed - Opened by mu40 11 months ago

#561 - Add support for pathlib inputs.

Pull Request - State: closed - Opened by mu40 11 months ago

#560 - Get predicted deformation field moving -> fixed

Issue - State: closed - Opened by annareithmeir 11 months ago - 4 comments
Labels: hypermorph

#559 - What the ‘pout’ means in /voxelmorph/voxelmorph/tf /networks.py line 937?

Issue - State: open - Opened by zoumaxingjiulic 11 months ago - 2 comments

#558 - A faster implementation of NCC using cumulative summation

Pull Request - State: open - Opened by kvttt 11 months ago - 1 comment

#557 - Proposed updated flow field color scheme and Hypermorph layers in PyTorch

Issue - State: open - Opened by aviziskind 12 months ago - 4 comments

#556 - number of dims don't match in permute

Issue - State: closed - Opened by lyqqhgzj 12 months ago - 1 comment

#555 - number of dims don't match in permute

Issue - State: closed - Opened by lyqqhgzj 12 months ago - 3 comments
Labels: voxelmorph

#554 - fix inspect.argspec bug with backward compatibility

Pull Request - State: closed - Opened by mabulnaga 12 months ago - 1 comment

#553 - modelio.py has error in python 3.11 from inspect

Issue - State: closed - Opened by mabulnaga 12 months ago - 2 comments

#552 - Update website URL.

Pull Request - State: closed - Opened by mu40 12 months ago

#551 - Optimization in pytorch with a fixed number of iterations in inner loop rather than using steps=len(dataset)/batch_size

Issue - State: closed - Opened by Voldemort108X almost 1 year ago - 4 comments

#548 - Semi supervised model not converging with only Dice loss

Issue - State: open - Opened by nicolas1805961 about 1 year ago

#547 - Fixed deprecated inspect.getargspec() dependency in torch/modelio.py

Pull Request - State: open - Opened by inhuszar about 1 year ago - 2 comments