Ecosyste.ms: Issues

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GitHub / vocalpy/vocalpy issues and pull requests

#192 - ENH: Add `to_mono` method to `Sound`

Issue - State: open - Opened by NickleDave 20 days ago
Labels: ENH: enhancement, Sound

#191 - DOC: Add citations / example to `vocalpy.feature.sat` docstring

Issue - State: open - Opened by NickleDave 20 days ago
Labels: DOC: documentation

#190 - ENH/CLN: Rename feature extraction functions so we can do `vocalpy.feature.function`

Issue - State: closed - Opened by NickleDave 20 days ago - 1 comment
Labels: CLN

#189 - Post-NMAC 2024 GRS fixes

Pull Request - State: open - Opened by NickleDave 20 days ago

#187 - Boxes segmentation algorithm: Morphological Geodesic Active Contour (GAC)

Issue - State: open - Opened by NickleDave 23 days ago
Labels: Segmentation

#186 - ENH: Add `Segments.from_csv`

Issue - State: closed - Opened by NickleDave 23 days ago
Labels: Segmentation

#185 - ENH: Refactor `examples` API

Issue - State: closed - Opened by NickleDave 28 days ago - 1 comment

#184 - ENH: Add ability to get `vocalpy.Segments` from `vocalpy.Annotation` instance

Issue - State: open - Opened by NickleDave 28 days ago
Labels: Segmentation, Annotation

#182 - Add single example files of BF song + mouse pup call

Issue - State: closed - Opened by NickleDave 30 days ago
Labels: ENH: enhancement, TST: Testing, Segmentation

#181 - segment: RSMEAmplitude from AVN

Issue - State: open - Opened by NickleDave 30 days ago
Labels: Segmentation

#180 - segment: SAP amplitude

Issue - State: open - Opened by NickleDave 30 days ago
Labels: Segmentation

#179 - ENH: Add context manager to Soundfile

Issue - State: open - Opened by NickleDave about 2 months ago

#177 - DEV: Remove upper bound on numpy, bump minimum librosa version

Pull Request - State: closed - Opened by NickleDave about 2 months ago

#176 - docs: update all-contributors badge to new version

Pull Request - State: closed - Opened by tkoyama010 2 months ago - 2 comments

#175 - docs: add tkoyama010 as a contributor for doc

Pull Request - State: closed - Opened by allcontributors[bot] 4 months ago

#174 - Fix syntax of primary prompt of Python

Pull Request - State: closed - Opened by tkoyama010 4 months ago - 3 comments

#173 - BUG: numpy 2.0 breaking import

Issue - State: closed - Opened by ralphpeterson 5 months ago - 5 comments

#172 - DOC: Add units for SAT similarity features to docstrings

Issue - State: open - Opened by ralphpeterson 5 months ago - 3 comments
Labels: DOC: documentation

#171 - BUG: fix edge case with segmentation IR metrics, fixes #170

Pull Request - State: closed - Opened by NickleDave 5 months ago

#169 - BUG: handle edge case in `segment.ava`, fix #167

Pull Request - State: closed - Opened by NickleDave 5 months ago

#168 - segment: amplitude variance from Alam Zia Roberts 2024

Issue - State: open - Opened by NickleDave 5 months ago
Labels: Segmentation

#167 - BUG: `vocalpy.segment.ava` occassionally can set last segment > length of sound in samples

Issue - State: closed - Opened by NickleDave 5 months ago - 1 comment
Labels: BUG: a bug, Segmentation

#166 - DOC: vignette on "using VocalPy with UMAP + HDBSCAN"

Issue - State: open - Opened by NickleDave 6 months ago
Labels: DOC: documentation

#165 - DOC: vignette on "using vocalpy with scikit-learn"

Issue - State: open - Opened by NickleDave 6 months ago
Labels: DOC: documentation

#164 - ENH: Add `read` method to `SoundFile`

Issue - State: open - Opened by NickleDave 6 months ago
Labels: Sound

#162 - CLN: Remove `path` attribute from `Sound`

Issue - State: closed - Opened by NickleDave 6 months ago

#161 - TST: Add tests for FeatureExtractor

Issue - State: open - Opened by NickleDave 6 months ago
Labels: TST: Testing, Acoustic feature

#160 - ENH: Add `DimReducer` class to represent dimensionality reduction methods

Issue - State: open - Opened by NickleDave 6 months ago
Labels: ENH: enhancement

#159 - CLN: Add tests for `feature.biosound`

Issue - State: open - Opened by NickleDave 6 months ago
Labels: TST: Testing

#158 - ENH: Add `fit` method to `Segmenter` and/or add classes for segmenting with fit method

Issue - State: open - Opened by NickleDave 6 months ago - 2 comments
Labels: Segmentation

#157 - ENH: Add Jupyter repr for classes

Issue - State: open - Opened by NickleDave 6 months ago

#156 - ENH: Add ability to play sound

Issue - State: open - Opened by NickleDave 6 months ago
Labels: ENH: enhancement, Sound

#155 - ENH: Functionality to save sets of sounds and spectrograms as zarr groups

Issue - State: open - Opened by NickleDave 6 months ago
Labels: ENH: enhancement, Spectrogram, Sound

#154 - CLN/ENH: Decouple Segments from Sound

Issue - State: closed - Opened by NickleDave 6 months ago - 1 comment

#151 - CLN: Add repr to workflow classes, fix #142

Pull Request - State: closed - Opened by NickleDave 6 months ago

#150 - ENH: Add `segment` method to `Sound`

Issue - State: closed - Opened by NickleDave 6 months ago
Labels: Sound

#149 - ENH: Add `clip`method to Sound

Issue - State: closed - Opened by NickleDave 6 months ago
Labels: Sound

#148 - DOC: Clean up quickstart, fix #147

Pull Request - State: closed - Opened by NickleDave 6 months ago - 2 comments

#147 - DOC: Clean quickstart

Issue - State: closed - Opened by NickleDave 6 months ago

#144 - CLN: Rename `parallelize` parameter -> `parallel`

Issue - State: open - Opened by NickleDave 6 months ago

#141 - ENH: Add feature extractor, soundsig features; fix #27 #94

Pull Request - State: closed - Opened by NickleDave 6 months ago

#140 - DOC: Cite AVN *code*

Issue - State: open - Opened by NickleDave 7 months ago
Labels: DOC: documentation

#139 - CLN/DEV: Use lazy loading

Issue - State: open - Opened by NickleDave 7 months ago
Labels: DEV, CLN

#138 - ENH: Add `samplerate` attribute to `Segment` class, fix #137

Pull Request - State: closed - Opened by NickleDave 7 months ago

#137 - ENH: Add `samplerate` attribute to `Segment`

Issue - State: closed - Opened by NickleDave 7 months ago
Labels: Segmentation

#136 - ENH: Add `'sat-multitaper'` as `method` for `vocalpy.spectrogram`

Issue - State: open - Opened by NickleDave 7 months ago - 2 comments
Labels: ENH: enhancement, Spectrogram, Spectral

#135 - ENH/DOC: Document Params class

Issue - State: open - Opened by NickleDave 7 months ago
Labels: DOC: documentation, ENH: enhancement

#134 - ENH: Add FilesDataset class that uses pure SQLite

Issue - State: open - Opened by NickleDave 7 months ago - 1 comment
Labels: ENH: enhancement

#133 - ENH: Add Segments class

Pull Request - State: closed - Opened by NickleDave 7 months ago - 1 comment

#132 - ENH/CLN: Add dtype parameter to Sound, fix meansquared. Fixes #131 #129

Pull Request - State: closed - Opened by NickleDave 9 months ago - 1 comment

#131 - Add dtype parameter to Sound, default to np.float64

Issue - State: closed - Opened by NickleDave 9 months ago

#130 - Fix `vocalpy.segment.ava.segment` and tests, fixes #126

Pull Request - State: closed - Opened by NickleDave 9 months ago - 1 comment

#129 - CLN: Fix meansquared to operate on float64 by default

Issue - State: closed - Opened by NickleDave 9 months ago
Labels: CLN, Sound

#127 - ENH: Add `Segments` and `Boxes` class, have `vocalpy.segment` functions return them

Issue - State: open - Opened by NickleDave 9 months ago
Labels: ENH: enhancement, Segmentation, Acoustic feature

#126 - TST/CLN: Fix `vocalpy.segment.ava` tests, refactor function

Issue - State: closed - Opened by NickleDave 9 months ago - 1 comment

#125 - DOC: Use consistent definition for `sound` in all docstrings

Issue - State: open - Opened by NickleDave 9 months ago
Labels: DOC: documentation

#124 - ENH: Rename Audio to Sound, fix/add attributes. Fix #90

Pull Request - State: closed - Opened by NickleDave 9 months ago - 2 comments

#123 - BUG: Fix cepstrum in spectral.sat, fixes #122

Pull Request - State: closed - Opened by NickleDave 9 months ago - 1 comment

#122 - BUG: Cepstrum not computed correctly in vocalpy.spectral.sat

Issue - State: closed - Opened by NickleDave 9 months ago - 2 comments

#121 - MAINT: Vendor evfuncs, fix #118, bump crowsetta

Pull Request - State: closed - Opened by NickleDave 9 months ago - 1 comment

#119 - BUG: `metrics.segmentation.ir.precision` can be greater than 1.0

Issue - State: closed - Opened by NickleDave 9 months ago
Labels: BUG: a bug

#118 - CLN/MAINT: Vendor evfuncs

Issue - State: closed - Opened by NickleDave 9 months ago

#117 - ENH: Add trough_threshold parameter to feature.sat.pitch

Pull Request - State: closed - Opened by ralphpeterson 9 months ago - 2 comments

#116 - ENH: Add MUPET segmenting, thresholds on energy of gammatone spectrogram

Issue - State: open - Opened by NickleDave 10 months ago
Labels: ENH: enhancement, Segmentation

#115 - ENH: Add gammatone features, useful for MUPET

Issue - State: open - Opened by NickleDave 10 months ago - 2 comments
Labels: ENH: enhancement, Acoustic feature

#113 - ENH: Add examples, fix #33

Pull Request - State: closed - Opened by NickleDave 10 months ago - 1 comment

#112 - docs: add ralphpeterson as a contributor for code

Pull Request - State: closed - Opened by allcontributors[bot] 10 months ago

#111 - issue #100 patch — update hardcoded value in vocalpy.spectral.sat.py

Pull Request - State: closed - Opened by ralphpeterson 10 months ago - 4 comments

#110 - DOC: Use example data in docs + docstrings

Issue - State: open - Opened by NickleDave 10 months ago

#109 - Add spectrogram function, fix #88

Pull Request - State: closed - Opened by NickleDave 10 months ago - 2 comments

#108 - DEV: Update Python versions, fix other dependencies

Pull Request - State: closed - Opened by NickleDave 10 months ago - 3 comments

#107 - ENH: Plug-in system for databases, possibly remove SQLAlchemy

Issue - State: open - Opened by NickleDave 10 months ago
Labels: ENH: enhancement

#106 - docs: add ralphpeterson as a contributor for bug

Pull Request - State: closed - Opened by allcontributors[bot] 10 months ago

#105 - docs: add ralphpeterson as a contributor for doc

Pull Request - State: closed - Opened by allcontributors[bot] 10 months ago

#104 - DOC: Sections in user guide

Issue - State: open - Opened by NickleDave 10 months ago
Labels: DOC: documentation

#103 - ENH: Add Clusterer class + cluster module

Issue - State: open - Opened by NickleDave 10 months ago - 1 comment
Labels: ENH: enhancement

#102 - DEV: Raise requires_python to 3.10

Issue - State: closed - Opened by NickleDave 10 months ago
Labels: DEV

#101 - DOC: Fix link to contributing guide shared by all VocalPy packages, once we have that

Issue - State: open - Opened by NickleDave 10 months ago
Labels: DOC: documentation

#100 - BUG: "magic number" in vocalpy.spectral.sat should be `n_fft` arg

Issue - State: closed - Opened by ralphpeterson 10 months ago - 5 comments
Labels: BUG: a bug

#99 - Docs updates

Pull Request - State: closed - Opened by ralphpeterson 10 months ago - 6 comments

#98 - Revise install instructions, fix #96

Pull Request - State: closed - Opened by NickleDave 10 months ago - 1 comment

#96 - DOC: Add complete install instructions

Issue - State: closed - Opened by ralphpeterson 10 months ago - 10 comments
Labels: DOC: documentation

#95 - pip install taking a long time

Issue - State: closed - Opened by ralphpeterson 10 months ago - 3 comments

#94 - ENH: Implement FeatureExtractor

Issue - State: closed - Opened by NickleDave 10 months ago - 1 comment
Labels: ENH: enhancement, Acoustic feature

#93 - ENH: Add acoustic features from koe

Issue - State: open - Opened by NickleDave 10 months ago
Labels: Acoustic feature