Ecosyste.ms: Issues

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GitHub / vocalpy/vak issues and pull requests

#786 - docs: add milaXT as a contributor for bug

Pull Request - State: closed - Opened by allcontributors[bot] 24 days ago

#785 - BUG:dask.multiprocessing.PermissionError when running vak prep

Issue - State: open - Opened by milaXT 27 days ago - 10 comments
Labels: BUG

#784 - TST: Mock model classes in unit tests for high-level functions, write

Issue - State: open - Opened by NickleDave 4 months ago
Labels: TST: testing, Models

#783 - chore: fix broken CI

Issue - State: open - Opened by NickleDave 4 months ago
Labels: CI: continuous integration

#783 - chore: fix broken CI

Issue - State: open - Opened by NickleDave 4 months ago
Labels: CI: continuous integration

#782 - docs: add henricombrink as a contributor for bug

Pull Request - State: closed - Opened by allcontributors[bot] 4 months ago

#782 - docs: add henricombrink as a contributor for bug

Pull Request - State: closed - Opened by allcontributors[bot] 4 months ago

#781 - BUG: avoid KeyError in train.frame_classification, fix #779

Pull Request - State: closed - Opened by NickleDave 4 months ago

#780 - ENH: dataset to annotate across multiple folders

Issue - State: open - Opened by harshidapancholi 4 months ago - 1 comment
Labels: ENH: enhancement

#778 - ENH: Add extra "expt-tracking" that uses mlflow

Issue - State: open - Opened by NickleDave 4 months ago - 1 comment
Labels: ENH: enhancement

#777 - ENH: `vak.predict` should record which input was used for each prediction

Issue - State: open - Opened by NickleDave 5 months ago
Labels: ENH: enhancement

#776 - CLN: Rename/refactor BioSoundSegBench dataset -> CMACBench

Issue - State: open - Opened by NickleDave 5 months ago - 1 comment
Labels: CLN: clean / refactor

#775 - ENH: Add seed argument to `vak.prep.split` functions

Issue - State: open - Opened by NickleDave 5 months ago
Labels: ENH: enhancement

#772 - ENH: Add functionality to set seed

Issue - State: open - Opened by NickleDave 6 months ago - 2 comments

#770 - docs: add meriablue as a contributor for doc

Pull Request - State: closed - Opened by allcontributors[bot] 6 months ago

#769 - DOC: Update autoannoate tutorial, fix #768

Pull Request - State: closed - Opened by NickleDave 6 months ago

#769 - DOC: Update autoannoate tutorial, fix #768

Pull Request - State: closed - Opened by NickleDave 6 months ago

#768 - BUG: Error with dataset_path parameter in vak eval

Issue - State: closed - Opened by meriablue 7 months ago - 6 comments
Labels: BUG

#766 - BUG: minor fixes to run with biosoundsegbench dataset

Pull Request - State: closed - Opened by NickleDave 7 months ago

#765 - DEV: Require Python>=3.10, update other dependencies

Pull Request - State: closed - Opened by NickleDave 7 months ago

#764 - DEV/TEST/CI: nox sessions 'tar-generated-test-data' not working as expected

Issue - State: open - Opened by NickleDave 7 months ago
Labels: TST: testing, DEV: development, CI: continuous integration

#763 - DEV: Adjust lower/upper bounds on other dependencies

Issue - State: closed - Opened by NickleDave 7 months ago

#762 - DEV: Bump lower bound on requires-python to 3.10

Issue - State: closed - Opened by NickleDave 7 months ago

#761 - MODEL: canary-song-decoder

Issue - State: open - Opened by NickleDave 8 months ago
Labels: Models

#760 - MODEL: Add AVN Similarity

Issue - State: open - Opened by NickleDave 9 months ago
Labels: Models

#759 - MODEL: Add Repertoire Embedder

Issue - State: open - Opened by NickleDave 9 months ago
Labels: Models

#758 - MODEL: Add SqueakOut

Issue - State: open - Opened by NickleDave 9 months ago
Labels: Models

#757 - MODEL: Add voxaboxen

Issue - State: open - Opened by NickleDave 9 months ago
Labels: Models

#756 - ENH: Add pre-trained model checkpoints

Issue - State: open - Opened by NickleDave 9 months ago
Labels: Models

#754 - ENH: Add datasets module with BioSoundSegBench

Issue - State: closed - Opened by NickleDave 9 months ago - 1 comment
Labels: Datasets

#753 - CLN: Refactor model abstraction, fix #737 #726

Pull Request - State: closed - Opened by NickleDave 9 months ago

#753 - CLN: Refactor model abstraction, fix #737 #726

Pull Request - State: closed - Opened by NickleDave 9 months ago

#752 - ENH: Add lightning.Trainer config, fix #691 #687 #742 #745

Pull Request - State: closed - Opened by NickleDave 9 months ago

#752 - ENH: Add lightning.Trainer config, fix #691 #687 #742 #745

Pull Request - State: closed - Opened by NickleDave 9 months ago

#751 - Consider switching to keras as engine

Issue - State: open - Opened by NickleDave 9 months ago

#749 - ENH: Make it possible to specify different splits for datasets

Issue - State: open - Opened by NickleDave 9 months ago
Labels: ENH: enhancement

#748 - ENH: Add `dataset` sub-table to config file, remove other dataset/transform param keys

Issue - State: closed - Opened by NickleDave 9 months ago - 1 comment
Labels: ENH: enhancement

#747 - TST: Fix test in `common.labels`

Pull Request - State: closed - Opened by NickleDave 9 months ago

#747 - TST: Fix test in `common.labels`

Pull Request - State: closed - Opened by NickleDave 9 months ago

#746 - TST: Fix test in `common.labels`

Pull Request - State: closed - Opened by NickleDave 9 months ago

#745 - BUG: Predict throws `KeyError`

Issue - State: closed - Opened by avanikop 10 months ago - 2 comments
Labels: BUG

#744 - ENH: Add segmentation metrics

Issue - State: open - Opened by NickleDave 10 months ago
Labels: ENH: enhancement, Metrics

#743 - TST/CLN: Add tests for transforms sub-package

Issue - State: open - Opened by NickleDave 10 months ago
Labels: TST: testing, CLN: clean / refactor

#742 - BUG: Running lightning with default strategy 'DDP' breaks learncurve function

Issue - State: closed - Opened by NickleDave 10 months ago - 2 comments
Labels: BUG

#742 - BUG: Running lightning with default strategy 'DDP' breaks learncurve function

Issue - State: open - Opened by NickleDave 10 months ago - 1 comment
Labels: BUG

#741 - Out of memory error

Issue - State: open - Opened by athenasyarifa 12 months ago - 1 comment

#741 - Out of memory error

Issue - State: closed - Opened by athenasyarifa 12 months ago - 2 comments

#740 - Error running vak prep

Issue - State: closed - Opened by athenasyarifa 12 months ago - 3 comments

#739 - Error when running vak prep train.toml

Issue - State: closed - Opened by harshidapancholi 12 months ago - 6 comments

#738 - BUG: 1. Run the command vak prep gy6or6_train.toml in the terminal

Issue - State: closed - Opened by cantonsir about 1 year ago - 5 comments
Labels: BUG

#736 - CI: fix crashes due to missing from __future__ import annotations

Pull Request - State: open - Opened by NickleDave about 1 year ago - 1 comment

#735 - DOC: fix autoannotate tutorial configs, fixes #734

Pull Request - State: closed - Opened by NickleDave about 1 year ago

#734 - BUG/DOC: Tutorial eval and predict configs missing sections with model names

Issue - State: closed - Opened by harshidapancholi about 1 year ago - 8 comments
Labels: BUG, DOC: documentation

#733 - chore: release checklist

Issue - State: open - Opened by NickleDave about 1 year ago

#733 - chore: release checklist

Issue - State: open - Opened by NickleDave about 1 year ago

#732 - docs: add danielmk as a contributor for doc

Pull Request - State: closed - Opened by allcontributors[bot] about 1 year ago

#731 - Error for duplicate value val_dur in gy6ro6_train.toml from tutorial

Issue - State: closed - Opened by danielmk about 1 year ago - 3 comments
Labels: DOC: documentation

#726 - BUG: Loss and metrics are not logged correctly

Issue - State: closed - Opened by NickleDave over 1 year ago - 1 comment
Labels: BUG

#724 - ENH: Rename `datasets` to `pipes`, that have built-in transforms

Issue - State: closed - Opened by NickleDave over 1 year ago - 2 comments

#723 - CLN: Rename "segment error rate" to "character error rate", fix #721

Pull Request - State: closed - Opened by NickleDave over 1 year ago

#722 - BUG: Fix models to log train loss on step, fixes #720

Pull Request - State: closed - Opened by NickleDave over 1 year ago

#721 - ENH: Rename `SegmentErrorRate` -> `CharacterErrorRate`

Issue - State: closed - Opened by NickleDave over 1 year ago

#720 - BUG: Fix model families to log train loss on step

Issue - State: closed - Opened by NickleDave over 1 year ago
Labels: BUG

#719 - CLN/MAINT: Fix learncurve order and CI

Pull Request - State: open - Opened by NickleDave over 1 year ago

#718 - ENH: Minimize frame classification dataset size, fix #717

Pull Request - State: closed - Opened by NickleDave over 1 year ago

#716 - docs: add vivinastase as a contributor for ideas

Pull Request - State: closed - Opened by allcontributors[bot] over 1 year ago

#715 - DOC: Add eval to autoannotate, fix #460

Pull Request - State: closed - Opened by NickleDave over 1 year ago
Labels: DOC: documentation

#713 - docs: add marisbasha as a contributor for code

Pull Request - State: closed - Opened by allcontributors[bot] over 1 year ago

#712 - docs: add marisbasha as a contributor for ideas

Pull Request - State: closed - Opened by allcontributors[bot] over 1 year ago

#711 - docs: add zhileiz1992 as a contributor for code

Pull Request - State: closed - Opened by allcontributors[bot] over 1 year ago

#710 - BUG: fix default for post_tfm_kwargs, fixes Inconsistent syllable error

Pull Request - State: closed - Opened by zhileiz1992 over 1 year ago - 6 comments

#709 - BUG: Getting a warning about missing logger directories

Issue - State: closed - Opened by yardencsGitHub over 1 year ago - 2 comments
Labels: BUG

#708 - BUG: Getting a warning about Nvidia Tensor Cores

Issue - State: open - Opened by yardencsGitHub over 1 year ago - 1 comment
Labels: BUG

#707 - ENH: Require that `metrics` for a model definition be a subclass of `torchmetrics.Metric`

Issue - State: open - Opened by NickleDave over 1 year ago - 3 comments
Labels: ENH: enhancement

#706 - DOC, Make minor doc fixes, fixes #704

Pull Request - State: closed - Opened by NickleDave over 1 year ago

#705 - docs: add zhileiz1992 as a contributor for bug

Pull Request - State: closed - Opened by allcontributors[bot] over 1 year ago

#704 - DOC: Make minor doc fixes

Issue - State: closed - Opened by NickleDave over 1 year ago
Labels: DOC: documentation

#703 - docs: add VenetianRed as a contributor for bug

Pull Request - State: closed - Opened by allcontributors[bot] over 1 year ago

#702 - BUG: Make distance metrics return tensors, fix #700 #701

Pull Request - State: closed - Opened by NickleDave over 1 year ago - 1 comment

#701 - BUG/MAINT: Have all metrics return tensors

Issue - State: closed - Opened by NickleDave over 1 year ago - 1 comment

#700 - BUG: `Cannot convert a MPS Tensor to float64 dtype` on Apple M1 Max

Issue - State: closed - Opened by NickleDave over 1 year ago - 3 comments
Labels: BUG

#699 - DEV: Initial AVA implementation review

Pull Request - State: open - Opened by marisbasha over 1 year ago - 18 comments

#698 - DEV: Initial AVA model implementation

Pull Request - State: closed - Opened by marisbasha over 1 year ago - 2 comments

#697 - Inconsistent syllable error rate between vak eval and predict

Issue - State: closed - Opened by zhileiz1992 over 1 year ago - 15 comments
Labels: BUG