Ecosyste.ms: Issues
An open API service for providing issue and pull request metadata for open source projects.
GitHub / vocalpy/vak issues and pull requests
#786 - docs: add milaXT as a contributor for bug
Pull Request -
State: closed - Opened by allcontributors[bot] 24 days ago
#785 - BUG:dask.multiprocessing.PermissionError when running vak prep
Issue -
State: open - Opened by milaXT 27 days ago
- 10 comments
Labels: BUG
#784 - TST: Mock model classes in unit tests for high-level functions, write
Issue -
State: open - Opened by NickleDave 4 months ago
Labels: TST: testing, Models
#783 - chore: fix broken CI
Issue -
State: open - Opened by NickleDave 4 months ago
Labels: CI: continuous integration
#783 - chore: fix broken CI
Issue -
State: open - Opened by NickleDave 4 months ago
Labels: CI: continuous integration
#782 - docs: add henricombrink as a contributor for bug
Pull Request -
State: closed - Opened by allcontributors[bot] 4 months ago
#782 - docs: add henricombrink as a contributor for bug
Pull Request -
State: closed - Opened by allcontributors[bot] 4 months ago
#781 - BUG: avoid KeyError in train.frame_classification, fix #779
Pull Request -
State: closed - Opened by NickleDave 4 months ago
#780 - ENH: dataset to annotate across multiple folders
Issue -
State: open - Opened by harshidapancholi 4 months ago
- 1 comment
Labels: ENH: enhancement
#779 - BUG: `vak.train_classification` throws KeyError when checking for dataset_config["params"]["target_type"]
Issue -
State: closed - Opened by henricombrink 4 months ago
- 10 comments
Labels: BUG
#778 - ENH: Add extra "expt-tracking" that uses mlflow
Issue -
State: open - Opened by NickleDave 4 months ago
- 1 comment
Labels: ENH: enhancement
#777 - ENH: `vak.predict` should record which input was used for each prediction
Issue -
State: open - Opened by NickleDave 5 months ago
Labels: ENH: enhancement
#776 - CLN: Rename/refactor BioSoundSegBench dataset -> CMACBench
Issue -
State: open - Opened by NickleDave 5 months ago
- 1 comment
Labels: CLN: clean / refactor
#775 - ENH: Add seed argument to `vak.prep.split` functions
Issue -
State: open - Opened by NickleDave 5 months ago
Labels: ENH: enhancement
#774 - ENH: fix frame classification model to work with BioSoundSegBench
Pull Request -
State: closed - Opened by NickleDave 5 months ago
#773 - ENH: Add back clipping of splits for learning curves to target durations
Issue -
State: open - Opened by NickleDave 6 months ago
- 1 comment
#772 - ENH: Add functionality to set seed
Issue -
State: open - Opened by NickleDave 6 months ago
- 2 comments
#771 - BUG: train_test_dur_split_inds can return indices for training set slightly smaller than target duration
Issue -
State: open - Opened by NickleDave 6 months ago
#770 - docs: add meriablue as a contributor for doc
Pull Request -
State: closed - Opened by allcontributors[bot] 6 months ago
#769 - DOC: Update autoannoate tutorial, fix #768
Pull Request -
State: closed - Opened by NickleDave 6 months ago
#769 - DOC: Update autoannoate tutorial, fix #768
Pull Request -
State: closed - Opened by NickleDave 6 months ago
#768 - BUG: Error with dataset_path parameter in vak eval
Issue -
State: closed - Opened by meriablue 7 months ago
- 6 comments
Labels: BUG
#767 - BUG: post-processing transform doesn't work with boundary labels
Issue -
State: closed - Opened by NickleDave 7 months ago
#766 - BUG: minor fixes to run with biosoundsegbench dataset
Pull Request -
State: closed - Opened by NickleDave 7 months ago
#765 - DEV: Require Python>=3.10, update other dependencies
Pull Request -
State: closed - Opened by NickleDave 7 months ago
#764 - DEV/TEST/CI: nox sessions 'tar-generated-test-data' not working as expected
Issue -
State: open - Opened by NickleDave 7 months ago
Labels: TST: testing, DEV: development, CI: continuous integration
#764 - DEV/TEST/CI: nox sessions 'tar-generated-test-data' not working as expected
Issue -
State: open - Opened by NickleDave 7 months ago
#763 - DEV: Adjust lower/upper bounds on other dependencies
Issue -
State: closed - Opened by NickleDave 7 months ago
#762 - DEV: Bump lower bound on requires-python to 3.10
Issue -
State: closed - Opened by NickleDave 7 months ago
#761 - MODEL: canary-song-decoder
Issue -
State: open - Opened by NickleDave 8 months ago
Labels: Models
#760 - MODEL: Add AVN Similarity
Issue -
State: open - Opened by NickleDave 9 months ago
Labels: Models
#759 - MODEL: Add Repertoire Embedder
Issue -
State: open - Opened by NickleDave 9 months ago
Labels: Models
#758 - MODEL: Add SqueakOut
Issue -
State: open - Opened by NickleDave 9 months ago
Labels: Models
#757 - MODEL: Add voxaboxen
Issue -
State: open - Opened by NickleDave 9 months ago
Labels: Models
#756 - ENH: Add pre-trained model checkpoints
Issue -
State: open - Opened by NickleDave 9 months ago
Labels: Models
#755 - CLN/ENH: Rename and refactor datapipes, add datasets; fix #574 #724 #754
Pull Request -
State: closed - Opened by NickleDave 9 months ago
#754 - ENH: Add datasets module with BioSoundSegBench
Issue -
State: closed - Opened by NickleDave 9 months ago
- 1 comment
Labels: Datasets
#753 - CLN: Refactor model abstraction, fix #737 #726
Pull Request -
State: closed - Opened by NickleDave 9 months ago
#753 - CLN: Refactor model abstraction, fix #737 #726
Pull Request -
State: closed - Opened by NickleDave 9 months ago
#752 - ENH: Add lightning.Trainer config, fix #691 #687 #742 #745
Pull Request -
State: closed - Opened by NickleDave 9 months ago
#752 - ENH: Add lightning.Trainer config, fix #691 #687 #742 #745
Pull Request -
State: closed - Opened by NickleDave 9 months ago
#751 - Consider switching to keras as engine
Issue -
State: open - Opened by NickleDave 9 months ago
#750 - ENH: Switch to version 1.0 of config file format, fix #685 #345 #748
Pull Request -
State: closed - Opened by NickleDave 9 months ago
#749 - ENH: Make it possible to specify different splits for datasets
Issue -
State: open - Opened by NickleDave 9 months ago
Labels: ENH: enhancement
#748 - ENH: Add `dataset` sub-table to config file, remove other dataset/transform param keys
Issue -
State: closed - Opened by NickleDave 9 months ago
- 1 comment
Labels: ENH: enhancement
#747 - TST: Fix test in `common.labels`
Pull Request -
State: closed - Opened by NickleDave 9 months ago
#747 - TST: Fix test in `common.labels`
Pull Request -
State: closed - Opened by NickleDave 9 months ago
#746 - TST: Fix test in `common.labels`
Pull Request -
State: closed - Opened by NickleDave 9 months ago
#745 - BUG: Predict throws `KeyError`
Issue -
State: closed - Opened by avanikop 10 months ago
- 2 comments
Labels: BUG
#744 - ENH: Add segmentation metrics
Issue -
State: open - Opened by NickleDave 10 months ago
Labels: ENH: enhancement, Metrics
#743 - TST/CLN: Add tests for transforms sub-package
Issue -
State: open - Opened by NickleDave 10 months ago
Labels: TST: testing, CLN: clean / refactor
#742 - BUG: Running lightning with default strategy 'DDP' breaks learncurve function
Issue -
State: closed - Opened by NickleDave 10 months ago
- 2 comments
Labels: BUG
#742 - BUG: Running lightning with default strategy 'DDP' breaks learncurve function
Issue -
State: open - Opened by NickleDave 10 months ago
- 1 comment
Labels: BUG
#741 - Out of memory error
Issue -
State: open - Opened by athenasyarifa 12 months ago
- 1 comment
#741 - Out of memory error
Issue -
State: closed - Opened by athenasyarifa 12 months ago
- 2 comments
#740 - Error running vak prep
Issue -
State: closed - Opened by athenasyarifa 12 months ago
- 3 comments
#739 - Error when running vak prep train.toml
Issue -
State: closed - Opened by harshidapancholi 12 months ago
- 6 comments
#738 - BUG: 1. Run the command vak prep gy6or6_train.toml in the terminal
Issue -
State: closed - Opened by cantonsir about 1 year ago
- 5 comments
Labels: BUG
#737 - BUG/CLN: Refactor model abstraction so we don't subclass LightningModel, to fix loss logging
Issue -
State: closed - Opened by NickleDave about 1 year ago
- 2 comments
#736 - CI: fix crashes due to missing from __future__ import annotations
Pull Request -
State: open - Opened by NickleDave about 1 year ago
- 1 comment
#735 - DOC: fix autoannotate tutorial configs, fixes #734
Pull Request -
State: closed - Opened by NickleDave about 1 year ago
#734 - BUG/DOC: Tutorial eval and predict configs missing sections with model names
Issue -
State: closed - Opened by harshidapancholi about 1 year ago
- 8 comments
Labels: BUG, DOC: documentation
#733 - chore: release checklist
Issue -
State: open - Opened by NickleDave about 1 year ago
#733 - chore: release checklist
Issue -
State: open - Opened by NickleDave about 1 year ago
#732 - docs: add danielmk as a contributor for doc
Pull Request -
State: closed - Opened by allcontributors[bot] about 1 year ago
#731 - Error for duplicate value val_dur in gy6ro6_train.toml from tutorial
Issue -
State: closed - Opened by danielmk about 1 year ago
- 3 comments
Labels: DOC: documentation
#730 - ENH: check that value for validation step is valid for frame classification models before running learning curve
Issue -
State: open - Opened by NickleDave about 1 year ago
#729 - ENH: Add post-processing transform to remove short silent gaps
Issue -
State: open - Opened by NickleDave over 1 year ago
#728 - CLN: Move `vak.common.trainer` into `frame_classification` / have per-model family trainers
Issue -
State: open - Opened by NickleDave over 1 year ago
#727 - ENH: Have all model families save "best" checkpoint with the same name
Issue -
State: open - Opened by NickleDave over 1 year ago
#726 - BUG: Loss and metrics are not logged correctly
Issue -
State: closed - Opened by NickleDave over 1 year ago
- 1 comment
Labels: BUG
#725 - BUG: predict raises KeyError when config file is missing `[PREDICT.transform_kwargs]` with `window_size` option
Issue -
State: closed - Opened by wendtalexander over 1 year ago
- 5 comments
Labels: BUG
#724 - ENH: Rename `datasets` to `pipes`, that have built-in transforms
Issue -
State: closed - Opened by NickleDave over 1 year ago
- 2 comments
#723 - CLN: Rename "segment error rate" to "character error rate", fix #721
Pull Request -
State: closed - Opened by NickleDave over 1 year ago
#722 - BUG: Fix models to log train loss on step, fixes #720
Pull Request -
State: closed - Opened by NickleDave over 1 year ago
#721 - ENH: Rename `SegmentErrorRate` -> `CharacterErrorRate`
Issue -
State: closed - Opened by NickleDave over 1 year ago
#720 - BUG: Fix model families to log train loss on step
Issue -
State: closed - Opened by NickleDave over 1 year ago
Labels: BUG
#719 - CLN/MAINT: Fix learncurve order and CI
Pull Request -
State: open - Opened by NickleDave over 1 year ago
#718 - ENH: Minimize frame classification dataset size, fix #717
Pull Request -
State: closed - Opened by NickleDave over 1 year ago
#717 - ENH: Minimize duplication of data when preparing datasets for frame classification models
Issue -
State: closed - Opened by NickleDave over 1 year ago
- 1 comment
#716 - docs: add vivinastase as a contributor for ideas
Pull Request -
State: closed - Opened by allcontributors[bot] over 1 year ago
#715 - DOC: Add eval to autoannotate, fix #460
Pull Request -
State: closed - Opened by NickleDave over 1 year ago
Labels: DOC: documentation
#714 - ENH: Have `vak.predict` accept `post_tfm_kwargs` like `eval` + `learncurve`
Issue -
State: open - Opened by NickleDave over 1 year ago
#713 - docs: add marisbasha as a contributor for code
Pull Request -
State: closed - Opened by allcontributors[bot] over 1 year ago
#712 - docs: add marisbasha as a contributor for ideas
Pull Request -
State: closed - Opened by allcontributors[bot] over 1 year ago
#711 - docs: add zhileiz1992 as a contributor for code
Pull Request -
State: closed - Opened by allcontributors[bot] over 1 year ago
#710 - BUG: fix default for post_tfm_kwargs, fixes Inconsistent syllable error
Pull Request -
State: closed - Opened by zhileiz1992 over 1 year ago
- 6 comments
#709 - BUG: Getting a warning about missing logger directories
Issue -
State: closed - Opened by yardencsGitHub over 1 year ago
- 2 comments
Labels: BUG
#708 - BUG: Getting a warning about Nvidia Tensor Cores
Issue -
State: open - Opened by yardencsGitHub over 1 year ago
- 1 comment
Labels: BUG
#707 - ENH: Require that `metrics` for a model definition be a subclass of `torchmetrics.Metric`
Issue -
State: open - Opened by NickleDave over 1 year ago
- 3 comments
Labels: ENH: enhancement
#706 - DOC, Make minor doc fixes, fixes #704
Pull Request -
State: closed - Opened by NickleDave over 1 year ago
#705 - docs: add zhileiz1992 as a contributor for bug
Pull Request -
State: closed - Opened by allcontributors[bot] over 1 year ago
#704 - DOC: Make minor doc fixes
Issue -
State: closed - Opened by NickleDave over 1 year ago
Labels: DOC: documentation
#703 - docs: add VenetianRed as a contributor for bug
Pull Request -
State: closed - Opened by allcontributors[bot] over 1 year ago
#702 - BUG: Make distance metrics return tensors, fix #700 #701
Pull Request -
State: closed - Opened by NickleDave over 1 year ago
- 1 comment
#701 - BUG/MAINT: Have all metrics return tensors
Issue -
State: closed - Opened by NickleDave over 1 year ago
- 1 comment
#700 - BUG: `Cannot convert a MPS Tensor to float64 dtype` on Apple M1 Max
Issue -
State: closed - Opened by NickleDave over 1 year ago
- 3 comments
Labels: BUG
#699 - DEV: Initial AVA implementation review
Pull Request -
State: open - Opened by marisbasha over 1 year ago
- 18 comments
#698 - DEV: Initial AVA model implementation
Pull Request -
State: closed - Opened by marisbasha over 1 year ago
- 2 comments
#697 - Inconsistent syllable error rate between vak eval and predict
Issue -
State: closed - Opened by zhileiz1992 over 1 year ago
- 15 comments
Labels: BUG