Ecosyste.ms: Issues

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GitHub / vmikk/metagmisc issues and pull requests

#34 - phyloseq_mult_raref throwing warnings

Issue - State: open - Opened by Skirnir3141 19 days ago - 1 comment

#33 - Strata argument from adonis2 can't be added

Issue - State: open - Opened by AndreaVazgel 6 months ago - 1 comment
Labels: enhancement

#32 - dist2list, tri ==

Issue - State: closed - Opened by valugome 6 months ago - 2 comments

#31 - Error in if (class(dis) %in% "phylo") { : the condition has length > 1

Issue - State: open - Opened by chemy-cm 11 months ago - 1 comment
Labels: bug

#30 - how to install 0.0.4 version

Issue - State: closed - Opened by JH966 12 months ago - 1 comment

#29 - phyloseq_filter_prevalence, non zero dimension

Issue - State: closed - Opened by JH966 12 months ago - 1 comment
Labels: bug

#28 - error in function phyloseq_filter_prevalence

Issue - State: closed - Opened by J5886 about 1 year ago - 14 comments
Labels: bug

#27 - Rewrite `prevalence` function using `data.table`

Issue - State: closed - Opened by vmikk over 1 year ago - 1 comment
Labels: enhancement

#26 - Prevalence function missing from install

Issue - State: closed - Opened by LukDrey over 1 year ago - 3 comments
Labels: bug

#24 - phyloseq_inext -- error in rbind

Issue - State: open - Opened by gabriellestedman over 1 year ago - 3 comments
Labels: bug

#22 - phyloseq_inext: merge fail

Issue - State: open - Opened by JackDettoLoco about 2 years ago - 1 comment
Labels: bug

#22 - phyloseq_inext: merge fail

Issue - State: open - Opened by JackDettoLoco about 2 years ago - 1 comment
Labels: bug

#21 - Rewrite `get_max_taxonomic_rank` using `data.table`

Issue - State: open - Opened by vmikk about 3 years ago
Labels: enhancement

#20 - Average rarified OTU/ASV table after multiple rarefaction

Issue - State: closed - Opened by shreyaskumbhare about 3 years ago - 3 comments

#18 - phyloseq_to_df error: Sample names

Issue - State: closed - Opened by otaviolovison over 3 years ago - 4 comments

#17 - phyloseq_filter_prevalence error

Issue - State: closed - Opened by lcamVz about 4 years ago

#16 - shared otus function problem

Issue - State: closed - Opened by pavlo888 about 4 years ago - 4 comments

#15 - `dissimilarity_to_distance` - error if number of OTUs > number of samples

Issue - State: open - Opened by vmikk over 4 years ago
Labels: bug

#14 - Problem installing vmikk/metagMisc

Issue - State: closed - Opened by avportal over 4 years ago - 5 comments

#12 - Error in dimnames(x) when trying to normalize OTU table in a phyloseq object

Issue - State: closed - Opened by sklasek almost 5 years ago - 2 comments

#11 - Prevalence plots (total OTU abundance vs OTU prevalence)

Issue - State: closed - Opened by mariaasierra almost 5 years ago - 1 comment

#10 - phyloseq_replace_zero and phyloseq_transform_aldex_clr

Issue - State: closed - Opened by javiercnav about 5 years ago - 1 comment

#9 - Implement robust alternative to SES

Issue - State: open - Opened by vmikk about 5 years ago
Labels: enhancement

#8 - Typos

Pull Request - State: closed - Opened by frederic-mahe over 5 years ago - 1 comment

#7 - information about phyloseq_mult_raref

Issue - State: closed - Opened by shashankx over 5 years ago - 2 comments

#6 - Logo proposal

Issue - State: closed - Opened by Batarian711 over 6 years ago - 2 comments

#5 - Efficient rarefaction

Issue - State: open - Opened by vmikk over 6 years ago - 1 comment
Labels: enhancement

#4 - Purrr vs Plyr

Issue - State: open - Opened by vmikk about 7 years ago - 1 comment
Labels: enhancement, question

#3 - Tests needed

Issue - State: open - Opened by vmikk over 7 years ago
Labels: enhancement

#2 - MultSE and phyloseq filtering

Pull Request - State: closed - Opened by vmikk over 7 years ago
Labels: enhancement

#1 - Parallelize plyr-dependent functions

Issue - State: open - Opened by vmikk over 7 years ago - 1 comment
Labels: enhancement