vitessce/vitesscer issues and pull requests

#93 - Update shiny.Rmd to resolve shinyapps.io issue

Pull Request - State: closed - Opened by keller-mark 3 months ago

#93 - Update shiny.Rmd to resolve shinyapps.io issue

Pull Request - State: closed - Opened by keller-mark 3 months ago

#92 - vitessceR works locally but shinyapps.io deployment failed to show cells

Issue - State: closed - Opened by chunhuicai 5 months ago

#92 - vitessceR works locally but shinyapps.io deployment failed to show cells

Issue - State: closed - Opened by chunhuicai 5 months ago

#90 - Update vitessce JS package version

Pull Request - State: closed - Opened by keller-mark 6 months ago

#90 - Update vitessce JS package version

Pull Request - State: closed - Opened by keller-mark 6 months ago

#89 - Update wrappers_images.R

Pull Request - State: closed - Opened by keller-mark 6 months ago

#89 - Update wrappers_images.R

Pull Request - State: closed - Opened by keller-mark 6 months ago

#88 - Update json_local.Rmd

Pull Request - State: closed - Opened by keller-mark 6 months ago

#87 - Missing base_dir in MultiImageWrapper's convert_and_save method

Issue - State: closed - Opened by Artur-man 6 months ago
Labels: bug

#86 - OmeZarrWrapper instead of OmeTiffWrapper ?

Issue - State: open - Opened by Artur-man 6 months ago - 2 comments

#86 - OmeZarrWrapper instead of OmeTiffWrapper ?

Issue - State: open - Opened by Artur-man 6 months ago - 2 comments

#85 - Scalability of the shiny application using vitessceR

Issue - State: closed - Opened by ashishjain1988 8 months ago - 1 comment

#85 - Scalability of the shiny application using vitessceR

Issue - State: closed - Opened by ashishjain1988 8 months ago - 1 comment

#84 - Convert seurat object to JSON files

Issue - State: open - Opened by ZhengTiger 9 months ago - 1 comment

#84 - Convert seurat object to JSON files

Issue - State: open - Opened by ZhengTiger 9 months ago - 1 comment

#83 - Segmentations from zarr are not visualised in SPATIAL view

Issue - State: closed - Opened by Artur-man 10 months ago - 2 comments
Labels: bug

#83 - Segmentations from zarr are not visualised in SPATIAL view

Issue - State: closed - Opened by Artur-man 10 months ago - 2 comments
Labels: bug

#82 - Refactor into two packages

Pull Request - State: closed - Opened by keller-mark over 1 year ago

#81 - Seurat wrapper not working for Seurat v5 objects

Issue - State: open - Opened by FloWuenne over 1 year ago - 2 comments
Labels: bug

#81 - Seurat wrapper not working for Seurat v5 objects

Issue - State: open - Opened by FloWuenne over 1 year ago - 2 comments
Labels: bug

#80 - Use vitessceAnalysisR in vignettes

Issue - State: closed - Opened by keller-mark over 1 year ago
Labels: enhancement

#80 - Use vitessceAnalysisR in vignettes

Issue - State: closed - Opened by keller-mark over 1 year ago
Labels: enhancement

#79 - Perform data conversion outside of wrapper classes

Issue - State: closed - Opened by keller-mark over 1 year ago
Labels: enhancement

#79 - Perform data conversion outside of wrapper classes

Issue - State: closed - Opened by keller-mark over 1 year ago
Labels: enhancement

#78 - Support for base_dir in AbstractWrapper

Issue - State: closed - Opened by keller-mark over 1 year ago
Labels: enhancement

#78 - Support for base_dir in AbstractWrapper

Issue - State: closed - Opened by keller-mark over 1 year ago
Labels: enhancement

#77 - Upgrade JS version to v3.x

Pull Request - State: closed - Opened by keller-mark over 1 year ago

#76 - Update .Rbuildignore

Pull Request - State: closed - Opened by Liripo over 1 year ago - 1 comment

#74 - Error: path for html_dependency not found

Issue - State: closed - Opened by ZhengTiger over 1 year ago - 1 comment
Labels: bug

#74 - Error: path for html_dependency not found

Issue - State: closed - Opened by ZhengTiger over 1 year ago - 1 comment
Labels: bug

#71 - No JSON when exported

Issue - State: open - Opened by davidlin-stemcell about 2 years ago - 2 comments
Labels: bug

#71 - No JSON when exported

Issue - State: open - Opened by davidlin-stemcell about 2 years ago - 2 comments
Labels: bug

#70 - Usage with SpatialExample fails

Issue - State: open - Opened by wmedelman about 2 years ago - 1 comment
Labels: bug

#70 - Usage with SpatialExample fails

Issue - State: open - Opened by wmedelman about 2 years ago - 1 comment
Labels: bug

#69 - Add polyfill for promise.allsettled

Pull Request - State: open - Opened by keller-mark over 2 years ago

#69 - Add polyfill for promise.allsettled

Pull Request - State: open - Opened by keller-mark over 2 years ago

#68 - ome-tiff examples failing with "Promise.allSettled is not a function"

Issue - State: open - Opened by jkh1 over 2 years ago - 3 comments
Labels: bug

#68 - ome-tiff examples failing with "Promise.allSettled is not a function"

Issue - State: open - Opened by jkh1 over 2 years ago - 3 comments
Labels: bug

#67 - Views that do not share a dataset are coordinated together by default

Issue - State: closed - Opened by lee-t over 2 years ago - 2 comments
Labels: bug

#67 - Views that do not share a dataset are coordinated together by default

Issue - State: closed - Opened by lee-t over 2 years ago - 2 comments
Labels: bug

#66 - Error when loading into VitesseConfig with SpatialExperiement

Issue - State: closed - Opened by lee-t over 2 years ago
Labels: bug

#66 - Error when loading into VitesseConfig with SpatialExperiement

Issue - State: closed - Opened by lee-t over 2 years ago
Labels: bug

#65 - OME-TIFFs fail to load with no error message

Issue - State: open - Opened by keller-mark over 2 years ago - 8 comments
Labels: bug

#65 - OME-TIFFs fail to load with no error message

Issue - State: open - Opened by keller-mark over 2 years ago - 8 comments
Labels: bug

#64 - Don't try to unbox lists

Issue - State: closed - Opened by keller-mark over 2 years ago
Labels: bug

#64 - Don't try to unbox lists

Issue - State: closed - Opened by keller-mark over 2 years ago
Labels: bug

#63 - Upgrade vitessce, do not minify bundle, check for list in CoordinationScope$set_value

Pull Request - State: closed - Opened by keller-mark over 2 years ago

#63 - Upgrade vitessce, do not minify bundle, check for list in CoordinationScope$set_value

Pull Request - State: closed - Opened by keller-mark over 2 years ago

#62 - Require schemaVersion parameter in VitessceConfig constructor

Issue - State: closed - Opened by keller-mark over 2 years ago
Labels: enhancement

#62 - Require schemaVersion parameter in VitessceConfig constructor

Issue - State: closed - Opened by keller-mark over 2 years ago
Labels: enhancement

#61 - specifying a port in vc$widget() within a shiny app does not run on that port

Issue - State: closed - Opened by lee-t over 2 years ago - 10 comments
Labels: bug

#61 - specifying a port in vc$widget() within a shiny app does not run on that port

Issue - State: closed - Opened by lee-t over 2 years ago - 10 comments
Labels: bug

#60 - Add shiny example that loads data from remote AnnData-Zarr store

Issue - State: open - Opened by keller-mark almost 3 years ago - 1 comment
Labels: documentation

#60 - Add shiny example that loads data from remote AnnData-Zarr store

Issue - State: open - Opened by keller-mark almost 3 years ago - 1 comment
Labels: documentation

#59 - Remove merge_js, minify js bundle

Pull Request - State: closed - Opened by keller-mark almost 3 years ago

#59 - Remove merge_js, minify js bundle

Pull Request - State: closed - Opened by keller-mark almost 3 years ago

#58 - vc$widget does not render

Issue - State: closed - Opened by lee-t almost 3 years ago - 4 comments
Labels: bug

#58 - vc$widget does not render

Issue - State: closed - Opened by lee-t almost 3 years ago - 4 comments
Labels: bug

#57 - Refactor JS

Issue - State: closed - Opened by keller-mark almost 3 years ago - 2 comments
Labels: for-bioconductor

#56 - Refactor into small core package with only essential functionality

Issue - State: closed - Opened by keller-mark almost 3 years ago - 2 comments
Labels: for-bioconductor

#55 - cannot build submission for Bioconductor evaluation

Issue - State: closed - Opened by vjcitn almost 3 years ago
Labels: bug

#55 - cannot build submission for Bioconductor evaluation

Issue - State: closed - Opened by vjcitn almost 3 years ago
Labels: bug

#54 - NanoString dataset Giotto object example

Pull Request - State: open - Opened by keller-mark almost 3 years ago

#54 - NanoString dataset Giotto object example

Pull Request - State: open - Opened by keller-mark almost 3 years ago

#53 - Submit to package repository

Issue - State: open - Opened by keller-mark almost 3 years ago - 1 comment
Labels: for-bioconductor

#53 - Submit to package repository

Issue - State: open - Opened by keller-mark almost 3 years ago - 1 comment
Labels: for-bioconductor

#52 - Move merge_js to zzz

Pull Request - State: closed - Opened by keller-mark almost 3 years ago

#51 - Update vignettes

Pull Request - State: closed - Opened by keller-mark almost 3 years ago

#50 - Pkgdown bug fix

Pull Request - State: closed - Opened by keller-mark almost 3 years ago

#49 - Split JS into chunks

Pull Request - State: closed - Opened by keller-mark almost 3 years ago

#49 - Split JS into chunks

Pull Request - State: closed - Opened by keller-mark almost 3 years ago

#48 - Name change

Pull Request - State: closed - Opened by keller-mark almost 3 years ago