Ecosyste.ms: Issues

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GitHub / vitessce/vitessce-python issues and pull requests

#179 - Don't worry about 3.6

Pull Request - State: closed - Opened by mccalluc over 2 years ago

#178 - Clean up `ValueError` TODO

Issue - State: open - Opened by mccalluc over 2 years ago
Labels: possibly-outdated, tech debt

#177 - PR into mccalluc/coverage branch

Pull Request - State: closed - Opened by keller-mark over 2 years ago - 1 comment

#176 - Mccalluc/more linting adventures

Pull Request - State: closed - Opened by mccalluc over 2 years ago - 3 comments

#175 - Whitespace changes to make flake8 happy

Pull Request - State: closed - Opened by mccalluc over 2 years ago

#174 - Vitessce 1.1.20

Pull Request - State: closed - Opened by ilan-gold over 2 years ago - 3 comments

#173 - Mccalluc/just warn if imports fail

Pull Request - State: closed - Opened by mccalluc over 2 years ago - 2 comments

#172 - Use one version number for both PyPI and NPM

Issue - State: closed - Opened by keller-mark over 2 years ago - 2 comments
Labels: enhancement

#171 - Release v1.0.7

Pull Request - State: closed - Opened by keller-mark over 2 years ago

#170 - Require schemaVersion parameter in VitessceConfig constructor

Issue - State: closed - Opened by keller-mark over 2 years ago - 1 comment

#169 - Move from `master` to `main`

Issue - State: closed - Opened by keller-mark over 2 years ago

#168 - Remove version-specific logic

Pull Request - State: closed - Opened by mccalluc over 2 years ago

#167 - Light-weight install doesn't work

Issue - State: closed - Opened by mccalluc over 2 years ago

#166 - Update documentation and notebooks to install vitessce[all]

Pull Request - State: closed - Opened by keller-mark over 2 years ago

#165 - Version bump

Pull Request - State: closed - Opened by keller-mark over 2 years ago

#164 - Try to fix deploy again

Pull Request - State: closed - Opened by keller-mark over 2 years ago

#163 - Mccalluc/coverage

Pull Request - State: closed - Opened by mccalluc over 2 years ago - 4 comments

#162 - Fix error in build

Issue - State: closed - Opened by mccalluc over 2 years ago

#161 - Maybe dev dependencies should be in requirements.txt, not setup?

Issue - State: open - Opened by mccalluc over 2 years ago - 3 comments
Labels: possibly-outdated, devops

#160 - Mccalluc/idiomatic pytest

Pull Request - State: closed - Opened by mccalluc over 2 years ago

#159 - Mccalluc/pytest for everything

Pull Request - State: closed - Opened by mccalluc over 2 years ago - 1 comment

#158 - Mccalluc/test more versions

Pull Request - State: closed - Opened by mccalluc over 2 years ago

#157 - Test against more python versions

Issue - State: closed - Opened by mccalluc over 2 years ago

#156 - install flake8 from extras

Pull Request - State: closed - Opened by mccalluc over 2 years ago

#155 - Use pytest for everything

Issue - State: closed - Opened by mccalluc over 2 years ago

#154 - Test coverage

Issue - State: closed - Opened by mccalluc over 2 years ago

#153 - Mccalluc/try to split deps again

Pull Request - State: closed - Opened by mccalluc over 2 years ago - 3 comments

#152 - nbconvert dependency issue

Issue - State: closed - Opened by keller-mark over 2 years ago - 2 comments

#151 - Add build dependency

Pull Request - State: closed - Opened by keller-mark over 2 years ago - 1 comment

#150 - Try combining workflow yamls to keep config in sync

Issue - State: open - Opened by mccalluc over 2 years ago
Labels: possibly-outdated

#149 - Try fixing deploy github action

Pull Request - State: closed - Opened by keller-mark over 2 years ago - 1 comment

#148 - Fix npm ci step in github actions

Issue - State: closed - Opened by keller-mark over 2 years ago

#147 - Mccalluc/separate notebook dependencies

Pull Request - State: closed - Opened by mccalluc over 2 years ago - 2 comments

#145 - Additional extras_require sections

Issue - State: closed - Opened by keller-mark over 2 years ago
Labels: enhancement

#129 - Mccalluc/split widget dependencies

Pull Request - State: closed - Opened by mccalluc over 2 years ago - 1 comment

#128 - Add linting

Issue - State: closed - Opened by mccalluc over 2 years ago

#127 - Split widget code off as an optional install

Issue - State: closed - Opened by mccalluc over 2 years ago - 1 comment

#122 - Determine whether to split into core and extension package

Issue - State: closed - Opened by keller-mark over 2 years ago - 1 comment

#121 - Update dependencies in environment.yml

Pull Request - State: closed - Opened by keller-mark over 2 years ago

#117 - fix: force single chunk for labextension build

Pull Request - State: closed - Opened by manzt almost 3 years ago

#116 - Add multi-omics SNARE-seq or 10x multiome example

Issue - State: open - Opened by keller-mark almost 3 years ago - 1 comment
Labels: demo

#112 - Support raster.json via proxy

Issue - State: open - Opened by keller-mark about 3 years ago
Labels: bug, possibly-outdated

#81 - `widget_from_dict.ipynb`: Scatterplots not rendering

Issue - State: open - Opened by mccalluc over 3 years ago - 1 comment
Labels: possibly-outdated

#77 - Is there a suggested order to explore `docs/notebooks/`? Perhaps not...

Issue - State: open - Opened by mccalluc over 3 years ago - 1 comment
Labels: docs

#76 - in `docs/notebooks/` factor out shared data download steps into separate notebook? Or `.py`?

Issue - State: open - Opened by mccalluc over 3 years ago - 3 comments
Labels: docs, devops

#75 - in `docs/notebooks/` separate data directories for separate examples?

Issue - State: open - Opened by mccalluc over 3 years ago
Labels: docs, devops

#68 - Multiple Vitessce Instances Don't Display Scatterplots

Issue - State: open - Opened by ilan-gold over 3 years ago - 1 comment
Labels: bug, possibly-outdated

#64 - `ContextualVersionConflict` when following getting started instructions ... but works on retry?

Issue - State: open - Opened by mccalluc over 3 years ago - 5 comments
Labels: possibly-outdated

#61 - Check Centroid Condition for `AnnData` and `cells.json`

Issue - State: open - Opened by ilan-gold over 3 years ago
Labels: possibly-outdated

#58 - Start the Server from Within Python

Issue - State: open - Opened by ilan-gold over 3 years ago
Labels: feature

#52 - Clean Up Temp Directory After "Close"

Issue - State: open - Opened by ilan-gold over 3 years ago - 1 comment
Labels: possibly-outdated

#44 - Demo data processing

Pull Request - State: closed - Opened by keller-mark almost 4 years ago - 1 comment