vitessce/vitessce-data issues and pull requests

#115 - Bump dask from 2.11.0 to 2021.10.0

Pull Request - State: open - Opened by dependabot[bot] over 3 years ago
Labels: dependencies

#114 - add requirements.txt

Pull Request - State: closed - Opened by evanbiederstedt over 4 years ago

#113 - Missing .zgroups in Spraggins preview?

Issue - State: open - Opened by mccalluc over 4 years ago - 1 comment

#112 - Try UMAP instead of PCA

Pull Request - State: open - Opened by keller-mark over 4 years ago

#111 - Re-add requirements.txt for pip adherents

Issue - State: closed - Opened by evanbiederstedt over 4 years ago - 1 comment

#110 - Refactor for Packaging

Issue - State: open - Opened by ilan-gold over 4 years ago - 1 comment

#109 - Version bump

Pull Request - State: closed - Opened by keller-mark over 4 years ago

#108 - Expression matrix zarr processing

Pull Request - State: closed - Opened by keller-mark over 4 years ago - 1 comment

#107 - Update Linnarsson Name and Redeploy

Pull Request - State: closed - Opened by ilan-gold over 4 years ago

#106 - Add a demo dataset with thousands of genes

Issue - State: open - Opened by keller-mark over 4 years ago
Labels: enhancement

#105 - Fix issues with duplicated cell coordinates in the Linnarsson dataset

Issue - State: open - Opened by keller-mark over 4 years ago

#104 - Fix untar bug and python open() bug

Pull Request - State: closed - Opened by keller-mark over 4 years ago

#103 - Cell type annotations as cells, factors, and cell-sets for showcase

Pull Request - State: closed - Opened by keller-mark over 4 years ago

#103 - Cell type annotations as cells, factors, and cell-sets for showcase

Pull Request - State: closed - Opened by keller-mark over 4 years ago

#102 - kebab-case cell-sets file suffix

Pull Request - State: closed - Opened by keller-mark over 4 years ago

#101 - Render Layer Order

Pull Request - State: closed - Opened by ilan-gold over 4 years ago

#101 - Render Layer Order

Pull Request - State: closed - Opened by ilan-gold over 4 years ago

#100 - Use bioformats2raw to convert zarr images to ome-zarr

Issue - State: open - Opened by manzt over 4 years ago

#100 - Use bioformats2raw to convert zarr images to ome-zarr

Issue - State: open - Opened by manzt over 4 years ago

#99 - Docs and conda

Pull Request - State: closed - Opened by keller-mark over 4 years ago - 3 comments

#99 - Docs and conda

Pull Request - State: closed - Opened by keller-mark over 4 years ago - 3 comments

#98 - Version bump

Pull Request - State: closed - Opened by keller-mark over 4 years ago - 5 comments

#98 - Version bump

Pull Request - State: closed - Opened by keller-mark over 4 years ago - 5 comments

#97 - Cell type annotations for spleen dataset using EBI Cell Ontology

Pull Request - State: closed - Opened by keller-mark over 4 years ago - 7 comments

#97 - Cell type annotations for spleen dataset using EBI Cell Ontology

Pull Request - State: closed - Opened by keller-mark over 4 years ago - 7 comments

#96 - Reduce size of Linnarsson fake-data

Issue - State: open - Opened by keller-mark over 4 years ago

#96 - Reduce size of Linnarsson fake-data

Issue - State: open - Opened by keller-mark over 4 years ago

#95 - Cell annotations to factors

Pull Request - State: closed - Opened by keller-mark over 4 years ago - 1 comment

#95 - Cell annotations to factors

Pull Request - State: closed - Opened by keller-mark over 4 years ago - 1 comment

#94 - Cell sets

Pull Request - State: closed - Opened by keller-mark over 4 years ago

#94 - Cell sets

Pull Request - State: closed - Opened by keller-mark over 4 years ago

#93 - Add OMEXML "equivalent" for zarr based images

Issue - State: open - Opened by manzt almost 5 years ago

#93 - Add OMEXML "equivalent" for zarr based images

Issue - State: open - Opened by manzt almost 5 years ago

#92 - Visual bug in zarr image

Issue - State: closed - Opened by ilan-gold almost 5 years ago - 2 comments
Labels: bug

#92 - Visual bug in zarr image

Issue - State: closed - Opened by ilan-gold almost 5 years ago - 2 comments
Labels: bug

#91 - Merge metadata for spraggins images into single raster.json

Pull Request - State: closed - Opened by manzt almost 5 years ago

#91 - Merge metadata for spraggins images into single raster.json

Pull Request - State: closed - Opened by manzt almost 5 years ago

#90 - Migrate image data to raster schema proposal

Pull Request - State: closed - Opened by manzt almost 5 years ago

#90 - Migrate image data to raster schema proposal

Pull Request - State: closed - Opened by manzt almost 5 years ago

#89 - Code to generate spraggins.ome.tiff fixture?

Issue - State: closed - Opened by manzt almost 5 years ago - 1 comment

#89 - Code to generate spraggins.ome.tiff fixture?

Issue - State: closed - Opened by manzt almost 5 years ago - 1 comment

#88 - Raster data model proposal

Issue - State: closed - Opened by manzt almost 5 years ago - 4 comments

#88 - Raster data model proposal

Issue - State: closed - Opened by manzt almost 5 years ago - 4 comments

#87 - Colors for the raster data

Issue - State: open - Opened by ilan-gold almost 5 years ago - 1 comment
Labels: enhancement, good first issue

#87 - Colors for the raster data

Issue - State: open - Opened by ilan-gold almost 5 years ago - 1 comment
Labels: enhancement, good first issue

#86 - format ./python with `black`

Pull Request - State: closed - Opened by manzt almost 5 years ago - 4 comments

#86 - format ./python with `black`

Pull Request - State: closed - Opened by manzt almost 5 years ago - 4 comments

#85 - Run black on ./python dir

Issue - State: closed - Opened by manzt almost 5 years ago - 1 comment

#85 - Run black on ./python dir

Issue - State: closed - Opened by manzt almost 5 years ago - 1 comment

#84 - replace `gsutil mv` with `gsutil rsync`

Pull Request - State: closed - Opened by manzt almost 5 years ago

#84 - replace `gsutil mv` with `gsutil rsync`

Pull Request - State: closed - Opened by manzt almost 5 years ago

#83 - Update Spraggins

Pull Request - State: closed - Opened by ilan-gold almost 5 years ago

#83 - Update Spraggins

Pull Request - State: closed - Opened by ilan-gold almost 5 years ago

#82 - Push spraggins to google cloud

Pull Request - State: closed - Opened by manzt almost 5 years ago - 1 comment

#82 - Push spraggins to google cloud

Pull Request - State: closed - Opened by manzt almost 5 years ago - 1 comment

#81 - Update url test and bump version

Pull Request - State: closed - Opened by ilan-gold almost 5 years ago

#81 - Update url test and bump version

Pull Request - State: closed - Opened by ilan-gold almost 5 years ago

#80 - publish 0.0.23

Pull Request - State: closed - Opened by manzt almost 5 years ago - 1 comment

#80 - publish 0.0.23

Pull Request - State: closed - Opened by manzt almost 5 years ago - 1 comment

#79 - Uncomment test

Pull Request - State: closed - Opened by ilan-gold almost 5 years ago

#79 - Uncomment test

Pull Request - State: closed - Opened by ilan-gold almost 5 years ago

#78 - citation for cytokit data?

Issue - State: open - Opened by mccalluc almost 5 years ago

#78 - citation for cytokit data?

Issue - State: open - Opened by mccalluc almost 5 years ago

#77 - Read cytokit csv

Pull Request - State: closed - Opened by mccalluc almost 5 years ago - 1 comment

#77 - Read cytokit csv

Pull Request - State: closed - Opened by mccalluc almost 5 years ago - 1 comment

#76 - Color output

Issue - State: open - Opened by mccalluc almost 5 years ago - 1 comment

#76 - Color output

Issue - State: open - Opened by mccalluc almost 5 years ago - 1 comment

#75 - pip install doesn't work on python 3.8

Issue - State: open - Opened by mccalluc almost 5 years ago

#75 - pip install doesn't work on python 3.8

Issue - State: open - Opened by mccalluc almost 5 years ago

#74 - Updaet schema outputs for vanderbilt

Pull Request - State: closed - Opened by ilan-gold almost 5 years ago - 1 comment

#74 - Updaet schema outputs for vanderbilt

Pull Request - State: closed - Opened by ilan-gold almost 5 years ago - 1 comment

#73 - Fix URL

Pull Request - State: closed - Opened by ilan-gold almost 5 years ago

#73 - Fix URL

Pull Request - State: closed - Opened by ilan-gold almost 5 years ago

#72 - generate linnarsson zarr from hdf5 directly

Pull Request - State: closed - Opened by manzt almost 5 years ago - 5 comments

#72 - generate linnarsson zarr from hdf5 directly

Pull Request - State: closed - Opened by manzt almost 5 years ago - 5 comments

#71 - change ordering to mz,y,x and chunk for better spatial access

Pull Request - State: closed - Opened by manzt almost 5 years ago - 1 comment

#71 - change ordering to mz,y,x and chunk for better spatial access

Pull Request - State: closed - Opened by manzt almost 5 years ago - 1 comment

#70 - IMS dataset should be [mz, y, x] not [mz, x, y] in ordering

Issue - State: closed - Opened by manzt almost 5 years ago

#70 - IMS dataset should be [mz, y, x] not [mz, x, y] in ordering

Issue - State: closed - Opened by manzt almost 5 years ago

#69 - Vanderbilt Data

Pull Request - State: closed - Opened by ilan-gold almost 5 years ago

#69 - Vanderbilt Data

Pull Request - State: closed - Opened by ilan-gold almost 5 years ago

#68 - Add JSON for Spraggins IMS dataset

Pull Request - State: closed - Opened by manzt about 5 years ago - 1 comment

#68 - Add JSON for Spraggins IMS dataset

Pull Request - State: closed - Opened by manzt about 5 years ago - 1 comment

#67 - Simply missing files might not be flagged in diff?

Issue - State: closed - Opened by mccalluc about 5 years ago - 1 comment

#67 - Simply missing files might not be flagged in diff?

Issue - State: closed - Opened by mccalluc about 5 years ago - 1 comment

#66 - Add IMS spraggins dataset

Pull Request - State: closed - Opened by manzt about 5 years ago - 2 comments

#66 - Add IMS spraggins dataset

Pull Request - State: closed - Opened by manzt about 5 years ago - 2 comments

#65 - Update wang to point at static data source

Pull Request - State: closed - Opened by ilan-gold about 5 years ago

#64 - bump version number for S3_TARGET

Pull Request - State: closed - Opened by ilan-gold about 5 years ago

#64 - bump version number for S3_TARGET

Pull Request - State: closed - Opened by ilan-gold about 5 years ago

#63 - Translate into CWL

Issue - State: open - Opened by mccalluc about 5 years ago

#63 - Translate into CWL

Issue - State: open - Opened by mccalluc about 5 years ago

#62 - Simplify travis

Pull Request - State: closed - Opened by mccalluc over 5 years ago - 1 comment

#62 - Simplify travis

Pull Request - State: closed - Opened by mccalluc over 5 years ago - 1 comment

#61 - Bump ome-tiff-tiler version

Pull Request - State: closed - Opened by mccalluc over 5 years ago - 1 comment

#61 - Bump ome-tiff-tiler version

Pull Request - State: closed - Opened by mccalluc over 5 years ago - 1 comment

#60 - Toslchan/docker

Pull Request - State: closed - Opened by thomaslchan over 5 years ago

#60 - Toslchan/docker

Pull Request - State: closed - Opened by thomaslchan over 5 years ago

#59 - Create and use ome-tiff-tiler docker container

Issue - State: closed - Opened by mccalluc over 5 years ago - 1 comment

#59 - Create and use ome-tiff-tiler docker container

Issue - State: closed - Opened by mccalluc over 5 years ago - 1 comment

GitHub / vitessce/vitessce-data issues and pull requests