Ecosyste.ms: Issues
An open API service for providing issue and pull request metadata for open source projects.
GitHub / vijaybarve/taxotools issues and pull requests
#145 - CRAN suggestions
Issue -
State: closed - Opened by vijaybarve 6 months ago
#144 - get_synonyms example needs improvement
Issue -
State: closed - Opened by vijaybarve over 1 year ago
Labels: enhancement, get_synonyms
#143 - syn2taxo needs to handle order and family fields
Issue -
State: closed - Opened by vijaybarve over 1 year ago
Labels: enhancement, syn2taxo
#142 - CRAN Feedback : Remove commented code lines in examples
Issue -
State: closed - Opened by vijaybarve over 1 year ago
Labels: enhancement, list_itis_syn
#141 - CRAN feedback : always explain all acronyms in the description text
Issue -
State: closed - Opened by vijaybarve over 1 year ago
Labels: enhancement
#140 - CRAN feedback : omit the redundant "Tools to"
Issue -
State: closed - Opened by vijaybarve over 1 year ago
Labels: enhancement
#139 - match_lists examples is not working
Issue -
State: closed - Opened by vijaybarve over 1 year ago
Labels: bug, match_lists
#138 - \dontrun{} should only be used if the example really cannot be executed
Issue -
State: closed - Opened by vijaybarve over 2 years ago
Labels: enhancement
#137 - Examples are commented out
Issue -
State: closed - Opened by vijaybarve over 2 years ago
Labels: enhancement
#136 - \dontrun is redundant with if(interactive())
Issue -
State: closed - Opened by vijaybarve over 2 years ago
Labels: enhancement
#135 - Error merge_lists : 'from' must be a finite number
Issue -
State: closed - Opened by vijaybarve over 2 years ago
- 1 comment
Labels: bug, merge_lists
#134 - wiki2taxo fails one data frame with 1000 names
Issue -
State: closed - Opened by vijaybarve almost 3 years ago
- 1 comment
Labels: bug, wiki2taxo
#133 - list_wiki_syn crash if name passed has a fuzzy match and no synonyms
Issue -
State: closed - Opened by vijaybarve almost 3 years ago
Labels: bug, list_wiki_syn
#132 - expand_name fails if short name is single word
Issue -
State: closed - Opened by vijaybarve almost 3 years ago
Labels: bug, expand_name
#131 - syn2taxo generates duplicate records
Issue -
State: closed - Opened by vijaybarve almost 3 years ago
- 1 comment
Labels: bug, syn2taxo
#130 - Should DwC2taxo have a filter on taxonRank
Issue -
State: open - Opened by vijaybarve almost 3 years ago
Labels: question, DwC2taxo
#129 - Problem with melt_scientificname
Issue -
State: open - Opened by njdowdy almost 3 years ago
Labels: melt_scientificname
#128 - Error in melt_canonical
Issue -
State: closed - Opened by narayanibarve about 3 years ago
Labels: melt_canonical
#127 - syn2taxo error
Issue -
State: open - Opened by narayanibarve about 3 years ago
Labels: bug, syn2taxo
#126 - DwC2taxo drops rows
Issue -
State: open - Opened by Jegelewicz over 3 years ago
Labels: DwC2taxo
#125 - Error in get_synonym when master is from sys2taxo
Issue -
State: closed - Opened by vijaybarve over 3 years ago
- 1 comment
Labels: bug, syn2taxo, get_synonyms
#124 - merge_lists changes accid so that it points to the wrong accepted name
Issue -
State: open - Opened by Jegelewicz over 3 years ago
Labels: bug, merge_lists
#123 - taxo2doc handling of differences in taxonStatus
Issue -
State: open - Opened by Jegelewicz over 3 years ago
Labels: bug, taxo2doc
#122 - fxn retuning an extra NA
Issue -
State: closed - Opened by vijaybarve over 3 years ago
- 2 comments
Labels: bug, cast_cs_field
#121 - fxn not returning synonyms
Issue -
State: closed - Opened by vijaybarve over 3 years ago
Labels: bug, get_synonyms
#120 - On lines of taxo2doc interactions2doc
Issue -
State: open - Opened by vijaybarve over 3 years ago
- 1 comment
Labels: enhancement
#119 - taxo2doc sorting
Issue -
State: closed - Opened by Jegelewicz over 3 years ago
- 1 comment
#118 - fxn compact_ids should check if it is efficient to compact the ids
Issue -
State: open - Opened by vijaybarve over 3 years ago
Labels: enhancement, compact_ids
#117 - merge_lists removes rows
Issue -
State: open - Opened by Jegelewicz over 3 years ago
- 2 comments
Labels: enhancement, merge_lists, compact_ids
#116 - Warnings in fxn taxo2doc causing incomplete doc file
Issue -
State: closed - Opened by vijaybarve over 3 years ago
- 1 comment
Labels: bug, taxo2doc
#115 - fxn cast_cs_field fails id NA in pri field
Issue -
State: closed - Opened by vijaybarve over 3 years ago
Labels: bug, cast_cs_field
#114 - Need a function to fetch all synonyms for the names in the list
Issue -
State: closed - Opened by vijaybarve over 3 years ago
Labels: enhancement
#113 - cast_canonical repeats last value if genus and species are NA
Issue -
State: closed - Opened by vijaybarve over 3 years ago
Labels: bug, cast_canonical
#112 - Improvement in melt_canonical
Issue -
State: open - Opened by narayanibarve over 3 years ago
Labels: enhancement, melt_canonical
#111 - taxo2doc needs ability to generate files for each family of genus
Issue -
State: open - Opened by vijaybarve over 3 years ago
Labels: enhancement, taxo2doc
#110 - taxo2doc request for synonyms to be displayed twice
Issue -
State: closed - Opened by vijaybarve over 3 years ago
- 1 comment
Labels: enhancement, taxo2doc
#109 - taxo2doc multi source lists
Issue -
State: closed - Opened by vijaybarve over 3 years ago
- 1 comment
Labels: enhancement, taxo2doc
#108 - taxo2doc needs param for controlling source display
Issue -
State: closed - Opened by vijaybarve over 3 years ago
- 1 comment
Labels: enhancement, taxo2doc
#107 - taxo2doc needs param to process a single family data
Issue -
State: closed - Opened by vijaybarve over 3 years ago
- 1 comment
Labels: enhancement, taxo2doc
#106 - merge_lists is duplicating ids?
Issue -
State: closed - Opened by vijaybarve over 3 years ago
Labels: bug, merge_lists
#105 - Should DwC2taxo handle subgenus?
Issue -
State: open - Opened by Jegelewicz over 3 years ago
Labels: enhancement, DwC2taxo
#104 - merge_lists should return single data frame
Issue -
State: closed - Opened by vijaybarve over 3 years ago
- 2 comments
Labels: enhancement, merge_lists
#103 - Create a function to compact ids
Issue -
State: closed - Opened by vijaybarve over 3 years ago
- 2 comments
Labels: enhancement, compact_ids
#102 - Add terms to "standard" statuslist in DwC2taxo
Issue -
State: open - Opened by Jegelewicz over 3 years ago
- 2 comments
Labels: enhancement, DwC2taxo
#101 - Error in merge_lists on non-numeric id fields
Issue -
State: closed - Opened by vijaybarve over 3 years ago
- 1 comment
Labels: bug, merge_lists
#100 - Error in DwC2taxo if taxonomicStatus does not have values
Issue -
State: closed - Opened by vijaybarve over 3 years ago
Labels: bug, DwC2taxo
#99 - Error in cast_caonical when called with 0 rows
Issue -
State: closed - Opened by vijaybarve over 3 years ago
Labels: bug, cast_canonical
#98 - cast_cs_field breaks of single record is passed
Issue -
State: closed - Opened by vijaybarve over 3 years ago
Labels: bug, cast_cs_field
#97 - merge_lists needs better example code
Issue -
State: closed - Opened by vijaybarve over 3 years ago
Labels: enhancement, merge_lists
#96 - merge_lists() throwing error because of names being factors
Issue -
State: closed - Opened by yanisica over 3 years ago
Labels: bug, merge_lists
#95 - Non DwC columns should be stripped with appropriate message
Issue -
State: open - Opened by vijaybarve over 3 years ago
Labels: enhancement, taxo2DwC
#94 - If Genus species fields are missing should canonical be melted
Issue -
State: closed - Opened by vijaybarve over 3 years ago
- 1 comment
Labels: question, taxo2DwC
#93 - taxonRank column in taxo2DwC is a list
Issue -
State: closed - Opened by vijaybarve over 3 years ago
Labels: bug, taxo2DwC
#92 - cast scientificName error
Issue -
State: closed - Opened by Jegelewicz over 3 years ago
- 5 comments
Labels: bug, cast_scientificname
#91 - Melt scientific name removes parenthesis from Authors
Issue -
State: open - Opened by Jegelewicz over 3 years ago
- 3 comments
Labels: bug, melt_scientificname
#90 - Function to verify names using GNverify
Issue -
State: closed - Opened by vijaybarve over 3 years ago
Labels: enhancement
#89 - Function to output taxolist into Taxonomic list in a document
Issue -
State: closed - Opened by vijaybarve over 3 years ago
Labels: enhancement
#88 - melt_cs_field needs a parameter to suppress progress bar
Issue -
State: closed - Opened by vijaybarve over 3 years ago
Labels: enhancement, melt_cs_field
#87 - Output unmatched subspecies in synonymize_subspecies
Issue -
State: closed - Opened by vijaybarve over 3 years ago
Labels: enhancement, synonymize_subspecies
#86 - Create species level entries for nominal subspecies in synonymize_subspecies
Issue -
State: open - Opened by vijaybarve over 3 years ago
- 3 comments
Labels: enhancement, synonymize_subspecies
#85 - melt_cs_field produces unexpected results if sepchar is pipe
Issue -
State: closed - Opened by vijaybarve over 3 years ago
Labels: bug, melt_cs_field
#84 - Add function to perform sanity checks on taxolist
Issue -
State: open - Opened by vijaybarve over 3 years ago
- 2 comments
Labels: enhancement
#83 - Add a function cast_scientific
Issue -
State: closed - Opened by vijaybarve over 3 years ago
Labels: enhancement
#82 - param sepchar is not working in function taxo2syn
Issue -
State: open - Opened by vijaybarve over 3 years ago
- 1 comment
Labels: bug, taxo2syn
#81 - Function cast_cs_field has trouble with NA or empty values of sec field
Issue -
State: closed - Opened by vijaybarve over 3 years ago
Labels: bug, cast_cs_field
#80 - source of synonyms is not carried in function syn2taxo
Issue -
State: closed - Opened by vijaybarve over 3 years ago
Labels: bug, syn2taxo
#79 - Change function list_itis_sys column names for consistency
Issue -
State: closed - Opened by vijaybarve over 3 years ago
Labels: enhancement, list_itis_syn
#78 - Improve documentation of list_higher_taxo for clarity
Issue -
State: open - Opened by vijaybarve over 3 years ago
Labels: enhancement, list_higher_taxo
#77 - function cast_cs_field throws an error if unavailable column names are passed
Issue -
State: closed - Opened by vijaybarve over 3 years ago
Labels: bug, cast_cs_field
#76 - Warning in get_accepted_names
Issue -
State: open - Opened by vijaybarve over 3 years ago
Labels: bug, get_accepted_names
#75 - add function to extract Author Year form Scientific names
Issue -
State: open - Opened by vijaybarve over 3 years ago
Labels: enhancement, DwC2taxo
#74 - add param to control fuzzy matching and distance to get_accepted_names
Issue -
State: closed - Opened by vijaybarve over 3 years ago
Labels: enhancement, get_accepted_names
#73 - fxn get_accepted_names has problem with names returned in sub2sp
Issue -
State: closed - Opened by vijaybarve over 3 years ago
- 1 comment
Labels: bug, get_accepted_names
#72 - toproper fails on NA
Issue -
State: closed - Opened by vijaybarve over 3 years ago
Labels: bug
#71 - Need to give warning if species is missing but subspecies is present in fxn cast_canonical
Issue -
State: closed - Opened by vijaybarve over 3 years ago
- 1 comment
Labels: enhancement, cast_canonical
#70 - If subgenus is without () melt_canonical does not work well
Issue -
State: closed - Opened by vijaybarve over 3 years ago
Labels: bug, make_canonical
#69 - fxn match_lists improved statistics
Issue -
State: closed - Opened by vijaybarve over 3 years ago
Labels: enhancement, match_lists
#68 - fxn match_lists stats is wrong
Issue -
State: closed - Opened by vijaybarve over 3 years ago
Labels: bug, match_lists
#67 - Error in list_wiki_syn
Issue -
State: closed - Opened by vijaybarve almost 4 years ago
Labels: bug, list_wiki_syn
#66 - Function synonymize_subspecies needs to connect to accepted names only
Issue -
State: closed - Opened by vijaybarve almost 4 years ago
Labels: bug, synonymize_subspecies
#65 - Should DwC2taxo return list of orphan names?
Issue -
State: open - Opened by vijaybarve almost 4 years ago
- 1 comment
Labels: question, DwC2taxo
#64 - Fxn cast_canonical needs to use better internal variables
Issue -
State: closed - Opened by vijaybarve almost 4 years ago
Labels: bug, cast_canonical
#63 - Names missing in DwC2taxo
Issue -
State: closed - Opened by vijaybarve almost 4 years ago
Labels: bug, DwC2taxo
#62 - Need a flexible syn2taxo function
Issue -
State: closed - Opened by vijaybarve almost 4 years ago
Labels: enhancement
#61 - Add a function taxo2DwC
Issue -
State: closed - Opened by vijaybarve almost 4 years ago
Labels: enhancement
#60 - Function DwC2taxo needs source parameter
Issue -
State: closed - Opened by vijaybarve about 4 years ago
Labels: enhancement, DwC2taxo
#59 - Need a fxn to convert list_wiki_syn output to taxo format
Issue -
State: closed - Opened by vijaybarve about 4 years ago
Labels: enhancement
#58 - fxn DwC2taxo does not work properly with ITIS
Issue -
State: closed - Opened by yanisica about 4 years ago
Labels: bug, DwC2taxo
#57 - fxn DwC2taxo need to handle Author and Year
Issue -
State: closed - Opened by vijaybarve about 4 years ago
Labels: enhancement, DwC2taxo
#56 - fxn synonymize_subspecies() does not work with ITIS
Issue -
State: closed - Opened by yanisica about 4 years ago
Labels: bug, synonymize_subspecies
#55 - fxn DwC2taxo does not work with GBIF
Issue -
State: closed - Opened by vijaybarve about 4 years ago
- 1 comment
Labels: enhancement, DwC2taxo
#54 - melt_scientificname failure
Issue -
State: closed - Opened by vijaybarve about 4 years ago
Labels: bug, melt_scientificname
#53 - Darwin Core to taxolist
Issue -
State: closed - Opened by vijaybarve about 4 years ago
Labels: enhancement
#52 - fxn synomyze_subspecies needs verbose option
Issue -
State: closed - Opened by vijaybarve about 4 years ago
Labels: enhancement, synonymize_subspecies
#51 - Add function to synonymize subspecies
Issue -
State: closed - Opened by vijaybarve about 4 years ago
Labels: enhancement, synonymize_subspecies
#50 - in function melt_scientificname columns subgenus and author are not renamed
Issue -
State: closed - Opened by vijaybarve about 4 years ago
Labels: bug, melt_scientificname
#48 - Ability to handle trinomial in function expand_name
Issue -
State: closed - Opened by vijaybarve about 4 years ago
Labels: enhancement, expand_name
#27 - Create a Hex Logo for package
Issue -
State: open - Opened by vijaybarve almost 5 years ago
- 7 comments
#15 - fxn list_wiki_syn returns a list?
Issue -
State: closed - Opened by vijaybarve over 5 years ago
- 1 comment
Labels: question, list_wiki_syn
#12 - Param validation in fxn cast_cs_field
Issue -
State: closed - Opened by vijaybarve over 5 years ago
Labels: enhancement, cast_cs_field