Ecosyste.ms: Issues

An open API service for providing issue and pull request metadata for open source projects.

GitHub / vijaybarve/taxotools issues and pull requests

#145 - CRAN suggestions

Issue - State: closed - Opened by vijaybarve 6 months ago

#144 - get_synonyms example needs improvement

Issue - State: closed - Opened by vijaybarve over 1 year ago
Labels: enhancement, get_synonyms

#143 - syn2taxo needs to handle order and family fields

Issue - State: closed - Opened by vijaybarve over 1 year ago
Labels: enhancement, syn2taxo

#142 - CRAN Feedback : Remove commented code lines in examples

Issue - State: closed - Opened by vijaybarve over 1 year ago
Labels: enhancement, list_itis_syn

#141 - CRAN feedback : always explain all acronyms in the description text

Issue - State: closed - Opened by vijaybarve over 1 year ago
Labels: enhancement

#140 - CRAN feedback : omit the redundant "Tools to"

Issue - State: closed - Opened by vijaybarve over 1 year ago
Labels: enhancement

#139 - match_lists examples is not working

Issue - State: closed - Opened by vijaybarve over 1 year ago
Labels: bug, match_lists

#138 - \dontrun{} should only be used if the example really cannot be executed

Issue - State: closed - Opened by vijaybarve over 2 years ago
Labels: enhancement

#137 - Examples are commented out

Issue - State: closed - Opened by vijaybarve over 2 years ago
Labels: enhancement

#136 - \dontrun is redundant with if(interactive())

Issue - State: closed - Opened by vijaybarve over 2 years ago
Labels: enhancement

#135 - Error merge_lists : 'from' must be a finite number

Issue - State: closed - Opened by vijaybarve over 2 years ago - 1 comment
Labels: bug, merge_lists

#134 - wiki2taxo fails one data frame with 1000 names

Issue - State: closed - Opened by vijaybarve almost 3 years ago - 1 comment
Labels: bug, wiki2taxo

#133 - list_wiki_syn crash if name passed has a fuzzy match and no synonyms

Issue - State: closed - Opened by vijaybarve almost 3 years ago
Labels: bug, list_wiki_syn

#132 - expand_name fails if short name is single word

Issue - State: closed - Opened by vijaybarve almost 3 years ago
Labels: bug, expand_name

#131 - syn2taxo generates duplicate records

Issue - State: closed - Opened by vijaybarve almost 3 years ago - 1 comment
Labels: bug, syn2taxo

#130 - Should DwC2taxo have a filter on taxonRank

Issue - State: open - Opened by vijaybarve almost 3 years ago
Labels: question, DwC2taxo

#129 - Problem with melt_scientificname

Issue - State: open - Opened by njdowdy almost 3 years ago
Labels: melt_scientificname

#128 - Error in melt_canonical

Issue - State: closed - Opened by narayanibarve about 3 years ago
Labels: melt_canonical

#127 - syn2taxo error

Issue - State: open - Opened by narayanibarve about 3 years ago
Labels: bug, syn2taxo

#126 - DwC2taxo drops rows

Issue - State: open - Opened by Jegelewicz over 3 years ago
Labels: DwC2taxo

#125 - Error in get_synonym when master is from sys2taxo

Issue - State: closed - Opened by vijaybarve over 3 years ago - 1 comment
Labels: bug, syn2taxo, get_synonyms

#124 - merge_lists changes accid so that it points to the wrong accepted name

Issue - State: open - Opened by Jegelewicz over 3 years ago
Labels: bug, merge_lists

#123 - taxo2doc handling of differences in taxonStatus

Issue - State: open - Opened by Jegelewicz over 3 years ago
Labels: bug, taxo2doc

#122 - fxn retuning an extra NA

Issue - State: closed - Opened by vijaybarve over 3 years ago - 2 comments
Labels: bug, cast_cs_field

#121 - fxn not returning synonyms

Issue - State: closed - Opened by vijaybarve over 3 years ago
Labels: bug, get_synonyms

#120 - On lines of taxo2doc interactions2doc

Issue - State: open - Opened by vijaybarve over 3 years ago - 1 comment
Labels: enhancement

#119 - taxo2doc sorting

Issue - State: closed - Opened by Jegelewicz over 3 years ago - 1 comment

#118 - fxn compact_ids should check if it is efficient to compact the ids

Issue - State: open - Opened by vijaybarve over 3 years ago
Labels: enhancement, compact_ids

#117 - merge_lists removes rows

Issue - State: open - Opened by Jegelewicz over 3 years ago - 2 comments
Labels: enhancement, merge_lists, compact_ids

#116 - Warnings in fxn taxo2doc causing incomplete doc file

Issue - State: closed - Opened by vijaybarve over 3 years ago - 1 comment
Labels: bug, taxo2doc

#115 - fxn cast_cs_field fails id NA in pri field

Issue - State: closed - Opened by vijaybarve over 3 years ago
Labels: bug, cast_cs_field

#114 - Need a function to fetch all synonyms for the names in the list

Issue - State: closed - Opened by vijaybarve over 3 years ago
Labels: enhancement

#113 - cast_canonical repeats last value if genus and species are NA

Issue - State: closed - Opened by vijaybarve over 3 years ago
Labels: bug, cast_canonical

#112 - Improvement in melt_canonical

Issue - State: open - Opened by narayanibarve over 3 years ago
Labels: enhancement, melt_canonical

#111 - taxo2doc needs ability to generate files for each family of genus

Issue - State: open - Opened by vijaybarve over 3 years ago
Labels: enhancement, taxo2doc

#110 - taxo2doc request for synonyms to be displayed twice

Issue - State: closed - Opened by vijaybarve over 3 years ago - 1 comment
Labels: enhancement, taxo2doc

#109 - taxo2doc multi source lists

Issue - State: closed - Opened by vijaybarve over 3 years ago - 1 comment
Labels: enhancement, taxo2doc

#108 - taxo2doc needs param for controlling source display

Issue - State: closed - Opened by vijaybarve over 3 years ago - 1 comment
Labels: enhancement, taxo2doc

#107 - taxo2doc needs param to process a single family data

Issue - State: closed - Opened by vijaybarve over 3 years ago - 1 comment
Labels: enhancement, taxo2doc

#106 - merge_lists is duplicating ids?

Issue - State: closed - Opened by vijaybarve over 3 years ago
Labels: bug, merge_lists

#105 - Should DwC2taxo handle subgenus?

Issue - State: open - Opened by Jegelewicz over 3 years ago
Labels: enhancement, DwC2taxo

#104 - merge_lists should return single data frame

Issue - State: closed - Opened by vijaybarve over 3 years ago - 2 comments
Labels: enhancement, merge_lists

#103 - Create a function to compact ids

Issue - State: closed - Opened by vijaybarve over 3 years ago - 2 comments
Labels: enhancement, compact_ids

#102 - Add terms to "standard" statuslist in DwC2taxo

Issue - State: open - Opened by Jegelewicz over 3 years ago - 2 comments
Labels: enhancement, DwC2taxo

#101 - Error in merge_lists on non-numeric id fields

Issue - State: closed - Opened by vijaybarve over 3 years ago - 1 comment
Labels: bug, merge_lists

#100 - Error in DwC2taxo if taxonomicStatus does not have values

Issue - State: closed - Opened by vijaybarve over 3 years ago
Labels: bug, DwC2taxo

#99 - Error in cast_caonical when called with 0 rows

Issue - State: closed - Opened by vijaybarve over 3 years ago
Labels: bug, cast_canonical

#98 - cast_cs_field breaks of single record is passed

Issue - State: closed - Opened by vijaybarve over 3 years ago
Labels: bug, cast_cs_field

#97 - merge_lists needs better example code

Issue - State: closed - Opened by vijaybarve over 3 years ago
Labels: enhancement, merge_lists

#96 - merge_lists() throwing error because of names being factors

Issue - State: closed - Opened by yanisica over 3 years ago
Labels: bug, merge_lists

#95 - Non DwC columns should be stripped with appropriate message

Issue - State: open - Opened by vijaybarve over 3 years ago
Labels: enhancement, taxo2DwC

#94 - If Genus species fields are missing should canonical be melted

Issue - State: closed - Opened by vijaybarve over 3 years ago - 1 comment
Labels: question, taxo2DwC

#93 - taxonRank column in taxo2DwC is a list

Issue - State: closed - Opened by vijaybarve over 3 years ago
Labels: bug, taxo2DwC

#92 - cast scientificName error

Issue - State: closed - Opened by Jegelewicz over 3 years ago - 5 comments
Labels: bug, cast_scientificname

#91 - Melt scientific name removes parenthesis from Authors

Issue - State: open - Opened by Jegelewicz over 3 years ago - 3 comments
Labels: bug, melt_scientificname

#90 - Function to verify names using GNverify

Issue - State: closed - Opened by vijaybarve over 3 years ago
Labels: enhancement

#89 - Function to output taxolist into Taxonomic list in a document

Issue - State: closed - Opened by vijaybarve over 3 years ago
Labels: enhancement

#88 - melt_cs_field needs a parameter to suppress progress bar

Issue - State: closed - Opened by vijaybarve over 3 years ago
Labels: enhancement, melt_cs_field

#87 - Output unmatched subspecies in synonymize_subspecies

Issue - State: closed - Opened by vijaybarve over 3 years ago
Labels: enhancement, synonymize_subspecies

#86 - Create species level entries for nominal subspecies in synonymize_subspecies

Issue - State: open - Opened by vijaybarve over 3 years ago - 3 comments
Labels: enhancement, synonymize_subspecies

#85 - melt_cs_field produces unexpected results if sepchar is pipe

Issue - State: closed - Opened by vijaybarve over 3 years ago
Labels: bug, melt_cs_field

#84 - Add function to perform sanity checks on taxolist

Issue - State: open - Opened by vijaybarve over 3 years ago - 2 comments
Labels: enhancement

#83 - Add a function cast_scientific

Issue - State: closed - Opened by vijaybarve over 3 years ago
Labels: enhancement

#82 - param sepchar is not working in function taxo2syn

Issue - State: open - Opened by vijaybarve over 3 years ago - 1 comment
Labels: bug, taxo2syn

#81 - Function cast_cs_field has trouble with NA or empty values of sec field

Issue - State: closed - Opened by vijaybarve over 3 years ago
Labels: bug, cast_cs_field

#80 - source of synonyms is not carried in function syn2taxo

Issue - State: closed - Opened by vijaybarve over 3 years ago
Labels: bug, syn2taxo

#79 - Change function list_itis_sys column names for consistency

Issue - State: closed - Opened by vijaybarve over 3 years ago
Labels: enhancement, list_itis_syn

#78 - Improve documentation of list_higher_taxo for clarity

Issue - State: open - Opened by vijaybarve over 3 years ago
Labels: enhancement, list_higher_taxo

#77 - function cast_cs_field throws an error if unavailable column names are passed

Issue - State: closed - Opened by vijaybarve over 3 years ago
Labels: bug, cast_cs_field

#76 - Warning in get_accepted_names

Issue - State: open - Opened by vijaybarve over 3 years ago
Labels: bug, get_accepted_names

#75 - add function to extract Author Year form Scientific names

Issue - State: open - Opened by vijaybarve over 3 years ago
Labels: enhancement, DwC2taxo

#74 - add param to control fuzzy matching and distance to get_accepted_names

Issue - State: closed - Opened by vijaybarve over 3 years ago
Labels: enhancement, get_accepted_names

#73 - fxn get_accepted_names has problem with names returned in sub2sp

Issue - State: closed - Opened by vijaybarve over 3 years ago - 1 comment
Labels: bug, get_accepted_names

#72 - toproper fails on NA

Issue - State: closed - Opened by vijaybarve over 3 years ago
Labels: bug

#71 - Need to give warning if species is missing but subspecies is present in fxn cast_canonical

Issue - State: closed - Opened by vijaybarve over 3 years ago - 1 comment
Labels: enhancement, cast_canonical

#70 - If subgenus is without () melt_canonical does not work well

Issue - State: closed - Opened by vijaybarve over 3 years ago
Labels: bug, make_canonical

#69 - fxn match_lists improved statistics

Issue - State: closed - Opened by vijaybarve over 3 years ago
Labels: enhancement, match_lists

#68 - fxn match_lists stats is wrong

Issue - State: closed - Opened by vijaybarve over 3 years ago
Labels: bug, match_lists

#67 - Error in list_wiki_syn

Issue - State: closed - Opened by vijaybarve almost 4 years ago
Labels: bug, list_wiki_syn

#66 - Function synonymize_subspecies needs to connect to accepted names only

Issue - State: closed - Opened by vijaybarve almost 4 years ago
Labels: bug, synonymize_subspecies

#65 - Should DwC2taxo return list of orphan names?

Issue - State: open - Opened by vijaybarve almost 4 years ago - 1 comment
Labels: question, DwC2taxo

#64 - Fxn cast_canonical needs to use better internal variables

Issue - State: closed - Opened by vijaybarve almost 4 years ago
Labels: bug, cast_canonical

#63 - Names missing in DwC2taxo

Issue - State: closed - Opened by vijaybarve almost 4 years ago
Labels: bug, DwC2taxo

#62 - Need a flexible syn2taxo function

Issue - State: closed - Opened by vijaybarve almost 4 years ago
Labels: enhancement

#61 - Add a function taxo2DwC

Issue - State: closed - Opened by vijaybarve almost 4 years ago
Labels: enhancement

#60 - Function DwC2taxo needs source parameter

Issue - State: closed - Opened by vijaybarve about 4 years ago
Labels: enhancement, DwC2taxo

#59 - Need a fxn to convert list_wiki_syn output to taxo format

Issue - State: closed - Opened by vijaybarve about 4 years ago
Labels: enhancement

#58 - fxn DwC2taxo does not work properly with ITIS

Issue - State: closed - Opened by yanisica about 4 years ago
Labels: bug, DwC2taxo

#57 - fxn DwC2taxo need to handle Author and Year

Issue - State: closed - Opened by vijaybarve about 4 years ago
Labels: enhancement, DwC2taxo

#56 - fxn synonymize_subspecies() does not work with ITIS

Issue - State: closed - Opened by yanisica about 4 years ago
Labels: bug, synonymize_subspecies

#55 - fxn DwC2taxo does not work with GBIF

Issue - State: closed - Opened by vijaybarve about 4 years ago - 1 comment
Labels: enhancement, DwC2taxo

#54 - melt_scientificname failure

Issue - State: closed - Opened by vijaybarve about 4 years ago
Labels: bug, melt_scientificname

#53 - Darwin Core to taxolist

Issue - State: closed - Opened by vijaybarve about 4 years ago
Labels: enhancement

#52 - fxn synomyze_subspecies needs verbose option

Issue - State: closed - Opened by vijaybarve about 4 years ago
Labels: enhancement, synonymize_subspecies

#51 - Add function to synonymize subspecies

Issue - State: closed - Opened by vijaybarve about 4 years ago
Labels: enhancement, synonymize_subspecies

#50 - in function melt_scientificname columns subgenus and author are not renamed

Issue - State: closed - Opened by vijaybarve about 4 years ago
Labels: bug, melt_scientificname

#48 - Ability to handle trinomial in function expand_name

Issue - State: closed - Opened by vijaybarve about 4 years ago
Labels: enhancement, expand_name

#27 - Create a Hex Logo for package

Issue - State: open - Opened by vijaybarve almost 5 years ago - 7 comments

#15 - fxn list_wiki_syn returns a list?

Issue - State: closed - Opened by vijaybarve over 5 years ago - 1 comment
Labels: question, list_wiki_syn

#12 - Param validation in fxn cast_cs_field

Issue - State: closed - Opened by vijaybarve over 5 years ago
Labels: enhancement, cast_cs_field