Ecosyste.ms: Issues

An open API service for providing issue and pull request metadata for open source projects.

GitHub / vgteam/sequencetubemap issues and pull requests

#462 - issue when visualizing paths other than reference

Issue - State: closed - Opened by Overcraft90 24 days ago - 2 comments

#461 - Re-take help screenshots

Issue - State: open - Opened by adamnovak about 1 month ago

#460 - Opacity of tracks based on a score/mappability

Pull Request - State: open - Opened by jmonlong about 1 month ago

#459 - Make curves going the same way use a consistent Z order

Pull Request - State: closed - Opened by adamnovak 2 months ago - 2 comments

#458 - Improve installation documentation

Pull Request - State: closed - Opened by adamnovak 2 months ago

#456 - Support for indexed GAF files

Pull Request - State: closed - Opened by jmonlong 3 months ago

#453 - Bundle tube map for easy installation into an executable or tarball

Issue - State: open - Opened by adamnovak 3 months ago - 4 comments

#451 - Actually set a coordinate bar merge threshold to fix #447

Pull Request - State: closed - Opened by adamnovak 4 months ago

#450 - How to interpret variation graphs in SequenceTubeMap

Issue - State: open - Opened by gforg34 5 months ago

#449 - Off by 1 error on end position bounds check

Issue - State: open - Opened by adamnovak 5 months ago - 1 comment

#446 - Visualizing a graph from short sequences

Issue - State: open - Opened by pbreeder 6 months ago - 2 comments

#445 - Reads Tip Overlap

Pull Request - State: open - Opened by shreyasun 6 months ago

#442 - Fix spelling

Pull Request - State: closed - Opened by adamnovak 6 months ago

#441 - Manual pre-deployment testing

Issue - State: closed - Opened by adamnovak 6 months ago

#440 - Modified sorting logic to sort no-node reads

Pull Request - State: closed - Opened by shreyasun 6 months ago

#439 - New data dropdown option for Lancet example

Pull Request - State: closed - Opened by shreyasun 6 months ago

#437 - Aligned first and last coordinate

Pull Request - State: closed - Opened by shreyasun 6 months ago

#436 - MinZoom

Pull Request - State: closed - Opened by shreyasun 6 months ago

#435 - Enable removing node sequences when reads are present

Pull Request - State: closed - Opened by shreyasun 6 months ago

#431 - Reads from different samples interleave oddly when skipping nodes

Issue - State: closed - Opened by adamnovak 6 months ago - 1 comment

#430 - Reads aren't clickable within nodes

Issue - State: open - Opened by adamnovak 6 months ago

#428 - Add a script that can batch import and explain Lancet data in the November format

Pull Request - State: closed - Opened by adamnovak 7 months ago - 1 comment

#426 - Use relative paths in link to view

Pull Request - State: closed - Opened by adamnovak 7 months ago

#422 - Allow eliding node sequences when reads are present

Issue - State: closed - Opened by adamnovak 7 months ago - 8 comments

#421 - Curved reads/paths stay highlighted after mouse over

Issue - State: closed - Opened by jmonlong 7 months ago - 1 comment

#419 - Reads can become oddly wide

Issue - State: open - Opened by adamnovak 7 months ago

#418 - Tips of reads can overlap in X by fractions of a base

Issue - State: open - Opened by adamnovak 7 months ago - 3 comments

#417 - Support GAF alignment files

Issue - State: open - Opened by adamnovak 7 months ago - 2 comments

#416 - Add remote URL support to GBZBase backend

Issue - State: open - Opened by adamnovak 7 months ago

#415 - Add read support to GBZBase backend

Issue - State: open - Opened by adamnovak 7 months ago

#414 - Remove Node Sequences Option

Pull Request - State: closed - Opened by shreyasun 8 months ago - 1 comment

#413 - HPRC Draft Pangenome Graphs fail to load

Issue - State: open - Opened by adadiehl 8 months ago - 1 comment

#412 - Add Visualization Examples

Pull Request - State: closed - Opened by ducku 8 months ago - 2 comments

#411 - vg chunk failed

Issue - State: open - Opened by this-is-Mayank 8 months ago - 5 comments

#410 - Add HTML Test Reporter

Pull Request - State: closed - Opened by ducku 8 months ago

#409 - Improve Markdown formatting

Pull Request - State: closed - Opened by adamnovak 8 months ago

#406 - Pick good Lancet visualization examples for the paper

Issue - State: closed - Opened by adamnovak 8 months ago

#405 - Extra horizontal space should have a coordinate bar break

Issue - State: closed - Opened by adamnovak 8 months ago - 9 comments

#404 - Code blocks don't format in the help view

Issue - State: closed - Opened by adamnovak 8 months ago

#403 - Add local backend mode

Pull Request - State: closed - Opened by adamnovak 8 months ago

#401 - Custom data

Issue - State: open - Opened by lalalagartija 8 months ago - 3 comments

#400 - Extra Space Between Nodes

Pull Request - State: closed - Opened by ducku 8 months ago - 2 comments

#399 - Remove references to dataPath

Pull Request - State: closed - Opened by shreyasun 9 months ago - 1 comment

#398 - GFA Documentation + GAF in prepare_local_chunk

Pull Request - State: closed - Opened by ducku 9 months ago

#397 - Fix failed prop type error

Pull Request - State: closed - Opened by shreyasun 9 months ago

#396 - Fix Out of Order Veritcal Transitions

Pull Request - State: closed - Opened by ducku 9 months ago

#395 - Reads Vertical Transitions Out Of Order

Issue - State: closed - Opened by ducku 9 months ago

#394 - Problems accessing the server created with the command "npm run serve"

Issue - State: closed - Opened by syresbr 9 months ago - 3 comments

#393 - Doc link to view url params

Pull Request - State: closed - Opened by shreyasun 9 months ago

#392 - Left-right button and region description integration

Pull Request - State: closed - Opened by adamnovak 9 months ago

#391 - Come up with a Lancet-to-Tube-Map pipeline

Issue - State: closed - Opened by adamnovak 9 months ago - 1 comment

#390 - Get rid of the dataPath in the examples and tests

Issue - State: closed - Opened by adamnovak 9 months ago - 1 comment

#389 - Improve Read Cycle Layout

Pull Request - State: closed - Opened by ducku 10 months ago - 2 comments

#388 - How to get the vg file could as input file for sequenceTubeMap

Issue - State: open - Opened by ld9866 10 months ago - 2 comments

#387 - Fix left right buttons

Pull Request - State: closed - Opened by shreyasun 10 months ago

#386 - Issues/364 prevent reads shuffle

Pull Request - State: closed - Opened by ducku 10 months ago

#385 - Add missing annotation and GAM files

Pull Request - State: closed - Opened by adamnovak 10 months ago

#384 - Add sketch of WASM integration

Pull Request - State: closed - Opened by adamnovak 10 months ago - 2 comments

#383 - Document and format

Pull Request - State: closed - Opened by adamnovak 10 months ago

#382 - Added read path information to read info dialog

Pull Request - State: closed - Opened by ducku 10 months ago

#381 - Implement API Interface

Pull Request - State: closed - Opened by ducku 11 months ago - 5 comments

#379 - Get Jouni's GBZ reader into WebAssembly and demo it as a tube map backend

Issue - State: closed - Opened by adamnovak 12 months ago - 5 comments

#377 - Refactor requests to the API so that they could be computed locally instead

Issue - State: closed - Opened by adamnovak 12 months ago - 3 comments

#372 - I want to learn more about your projects

Issue - State: closed - Opened by Szhiha 12 months ago - 4 comments

#367 - Implement GBZ database backend

Issue - State: open - Opened by adamnovak 12 months ago - 2 comments

#364 - Reads skipping multiple nodes do a nonsensical shuffle

Issue - State: closed - Opened by adamnovak about 1 year ago

#363 - Add read path information to read info dialog

Issue - State: closed - Opened by adamnovak about 1 year ago - 1 comment

#355 - Document when GFA node IDs can be used with `-n`

Issue - State: closed - Opened by adamnovak about 1 year ago - 6 comments

#349 - Allow eliding node sequences from the server response

Issue - State: closed - Opened by adamnovak about 1 year ago - 4 comments

#322 - Limit maximum rise/fall angles between nodes

Issue - State: closed - Opened by adamnovak over 1 year ago

#321 - Layout of reads going in cycles is bad

Issue - State: closed - Opened by adamnovak over 1 year ago - 2 comments

#317 - How to visualize a gbz file

Issue - State: open - Opened by leone93 over 1 year ago - 2 comments

#197 - Documentation for link-to-view URL parameters

Issue - State: closed - Opened by adamnovak about 2 years ago - 3 comments
Labels: good-first-issue, documentation

#187 - Test output is confusing and hard to debug

Issue - State: closed - Opened by adamnovak about 2 years ago - 4 comments
Labels: enhancement, help wanted, good-first-issue, qol

#149 - Form fields are weirdly wide now

Issue - State: closed - Opened by adamnovak over 2 years ago - 2 comments
Labels: enhancement, good-first-issue

#100 - VG chunk exited with code 0

Issue - State: open - Opened by AyushSemwal almost 4 years ago - 1 comment

#99 - update needed for compatible with xg version 15 or higher

Issue - State: closed - Opened by XuewenWangUGA almost 4 years ago - 1 comment