vgteam/libhandlegraph issues and pull requests

#38 - rewrite_segment really takes a first and past-last to designate the range to rewrite

Issue - State: open - Opened by adamnovak about 5 years ago

#37 - for_each_step_on_handle will give you step_handle_t values for which get_handle_of_step will return the reverse of the handle_t you started with

Issue - State: open - Opened by adamnovak about 5 years ago

#37 - for_each_step_on_handle will give you step_handle_t values for which get_handle_of_step will return the reverse of the handle_t you started with

Issue - State: open - Opened by adamnovak about 5 years ago

#36 - Add an operation to reassign IDs, and a default implementation for ID increment.

Pull Request - State: closed - Opened by adamnovak about 5 years ago

#36 - Add an operation to reassign IDs, and a default implementation for ID increment.

Pull Request - State: closed - Opened by adamnovak about 5 years ago

#35 - Add overridable methods for total edges and total length

Pull Request - State: closed - Opened by adamnovak about 5 years ago - 3 comments

#35 - Add overridable methods for total edges and total length

Pull Request - State: closed - Opened by adamnovak about 5 years ago - 3 comments

#34 - Add increment_node_ids method to mutable handle graph

Pull Request - State: closed - Opened by glennhickey about 5 years ago

#34 - Add increment_node_ids method to mutable handle graph

Pull Request - State: closed - Opened by glennhickey about 5 years ago

#33 - External iterators: for language bindings

Issue - State: open - Opened by JervenBolleman over 5 years ago - 12 comments

#33 - External iterators: for language bindings

Issue - State: open - Opened by JervenBolleman over 5 years ago - 12 comments

#32 - set a node id increment hint

Pull Request - State: closed - Opened by ekg over 5 years ago - 4 comments

#31 - helper functions for sorting handles, path_handles, and step_handles

Pull Request - State: closed - Opened by ekg over 5 years ago - 1 comment

#30 - Add missing virtual destructors

Pull Request - State: closed - Opened by glennhickey over 5 years ago

#29 - Sub-path support

Issue - State: open - Opened by glennhickey over 5 years ago - 9 comments

#28 - Acddd virtual destructors to interfaces

Pull Request - State: closed - Opened by jeizenga over 5 years ago

#27 - positions of nodes in a sorted array

Issue - State: closed - Opened by ekg over 5 years ago - 1 comment

#26 - Extend path position handle graph interface

Pull Request - State: closed - Opened by jeizenga over 5 years ago

#25 - simplify hiearchy for path graphs

Pull Request - State: closed - Opened by glennhickey over 5 years ago - 1 comment

#24 - Copy method

Pull Request - State: closed - Opened by glennhickey over 5 years ago - 1 comment

#23 - Null handle proposal

Pull Request - State: open - Opened by glennhickey over 5 years ago - 2 comments

#22 - Empty handle

Issue - State: open - Opened by glennhickey over 5 years ago - 5 comments

#21 - Allow void returning iteratees on for_each_edge

Pull Request - State: closed - Opened by jeizenga over 5 years ago

#20 - Design and Implement a Translation System

Issue - State: open - Opened by adamnovak over 5 years ago - 2 comments

#19 - Set up to be used in sglib

Pull Request - State: closed - Opened by adamnovak over 5 years ago

#18 - Python bindings

Pull Request - State: closed - Opened by adamnovak over 5 years ago - 1 comment

#17 - Proposal for a serialization interface

Pull Request - State: closed - Opened by jeizenga almost 6 years ago - 2 comments

#16 - Not Having A Class For Every Combination Of Features

Issue - State: open - Opened by adamnovak almost 6 years ago - 6 comments

#15 - Proposal for modified interface to do reverse iteration on paths

Pull Request - State: closed - Opened by jeizenga almost 6 years ago - 2 comments

#14 - provide a method for ordered implementations to set handle iteration …

Pull Request - State: closed - Opened by ekg almost 6 years ago - 1 comment

#13 - correct rewriting semantics to handle rewriting any step in the path

Pull Request - State: closed - Opened by ekg almost 6 years ago - 4 comments

#12 - problem with semantics of rewrite_segment

Issue - State: closed - Opened by ekg almost 6 years ago - 5 comments

#11 - new interface no longer compiles in odgi due to include order dependence

Issue - State: closed - Opened by ekg almost 6 years ago - 3 comments

#10 - Optimize method for mutable handle graph

Pull Request - State: closed - Opened by jeizenga almost 6 years ago - 2 comments

#9 - Add optimize method to mutable handle graph interface

Pull Request - State: closed - Opened by jeizenga almost 6 years ago - 1 comment

#8 - HandleGraph::for_each_edge requires a bool return value from its iteratee while other for_each things in libhandlegraph don't

Issue - State: closed - Opened by adamnovak almost 6 years ago

#7 - Add more edits to the mutable path interface

Pull Request - State: closed - Opened by jeizenga almost 6 years ago

#6 - What primitives do we want for path editing?

Issue - State: closed - Opened by jeizenga almost 6 years ago - 3 comments

#5 - Path improvification

Pull Request - State: closed - Opened by jeizenga almost 6 years ago - 6 comments

#4 - MutablePathDeletableHandleGraph can't be cast to MutablePathMutableHandleGraph

Issue - State: closed - Opened by jeizenga almost 6 years ago

#3 - What should the path handle interface looks like?

Issue - State: closed - Opened by jeizenga almost 6 years ago - 6 comments

#2 - Circular Paths

Issue - State: closed - Opened by emikoifish almost 6 years ago

#1 - fix bug in for_each_edge in handle_graph.hpp

Pull Request - State: closed - Opened by emikoifish almost 6 years ago

GitHub / vgteam/libhandlegraph issues and pull requests